ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 535 |
| Acc36I | ACCTGC | 1 cut(s) | 535 |
| AclWI | GGATC | 1 cut(s) | 212 |
| AcsI | RAATTY | 1 cut(s) | 115 |
| AfaI | GTAC | 4 cut(s) | 32, 64, 279, 427 |
| AgsI | TTSAA | 4 cut(s) | 310, 329, 512, 589 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 482, 514 |
| AluBI | AGCT | 5 cut(s) | 253, 386, 687, 703, 738 |
| AluI | AGCT | 5 cut(s) | 253, 386, 687, 703, 738 |
| Alw21I | GWGCWC | 2 cut(s) | 255, 412 |
| Alw26I | GTCTC | 1 cut(s) | 402 |
| AlwI | GGATC | 1 cut(s) | 212 |
| AoxI | GGCC | 1 cut(s) | 353 |
| ApeKI | GCWGC | 3 cut(s) | 547, 550, 691 |
| ApoI | RAATTY | 1 cut(s) | 115 |
| AsuHPI | GGTGA | 1 cut(s) | 227 |
| BanII | GRGCYC | 1 cut(s) | 255 |
| Bbv12I | GWGCWC | 2 cut(s) | 255, 412 |
| BbvI | GCAGC | 3 cut(s) | 534, 562, 703 |
| BccI | CCATC | 3 cut(s) | 158, 586, 614 |
| BcoDI | GTCTC | 1 cut(s) | 402 |
| BfaI | CTAG | 3 cut(s) | 87, 612, 739 |
| BfmI | CTRYAG | 2 cut(s) | 174, 548 |
| BfuAI | ACCTGC | 1 cut(s) | 535 |
| BisI | GCNGC | 3 cut(s) | 548, 551, 692 |
| BlsI | GCNGC | 3 cut(s) | 549, 552, 693 |
| BmiI | GGNNCC | 1 cut(s) | 181 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 26 |
| Bse1I | ACTGG | 2 cut(s) | 343, 405 |
| BseGI | GGATG | 1 cut(s) | 673 |
| BseMII | CTCAG | 4 cut(s) | 23, 545, 558, 697 |
| BseNI | ACTGG | 2 cut(s) | 343, 405 |
| BseXI | GCAGC | 3 cut(s) | 534, 562, 703 |
| BshFI | GGCC | 1 cut(s) | 355 |
| BsiHKAI | GWGCWC | 2 cut(s) | 255, 412 |
| BsmAI | GTCTC | 1 cut(s) | 402 |
| BsnI | GGCC | 1 cut(s) | 355 |
| Bsp1286I | GDGCHC | 2 cut(s) | 255, 412 |
| Bsp1407I | TGTACA | 2 cut(s) | 30, 62 |
| Bsp143I | GATC | 1 cut(s) | 217 |
| BspANI | GGCC | 1 cut(s) | 355 |
| BspCNI | CTCAG | 4 cut(s) | 22, 544, 559, 696 |
| BspLI | GGNNCC | 1 cut(s) | 181 |
| BspMAI | CTGCAG | 1 cut(s) | 552 |
| BspMI | ACCTGC | 1 cut(s) | 535 |
| BspPI | GGATC | 1 cut(s) | 212 |
| BsrGI | TGTACA | 2 cut(s) | 30, 62 |
| BsrI | ACTGG | 2 cut(s) | 343, 405 |
| BssMI | GATC | 1 cut(s) | 217 |
| Bst4CI | ACNGT | 5 cut(s) | 35, 67, 277, 396, 563 |
| Bst6I | CTCTTC | 1 cut(s) | 462 |
| BstAUI | TGTACA | 2 cut(s) | 30, 62 |
| BstC8I | GCNNGC | 2 cut(s) | 421, 689 |
| BstDEI | CTNAG | 4 cut(s) | 9, 531, 567, 683 |
| BstF5I | GGATG | 1 cut(s) | 673 |
| BstKTI | GATC | 1 cut(s) | 220 |
| BstMAI | GTCTC | 1 cut(s) | 402 |
| BstMBI | GATC | 1 cut(s) | 217 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 416, 700 |
| BstSFI | CTRYAG | 2 cut(s) | 174, 548 |
| BstV1I | GCAGC | 3 cut(s) | 534, 562, 703 |
| BsuRI | GGCC | 1 cut(s) | 355 |
| BtsCI | GGATG | 1 cut(s) | 673 |
| BtsIMutI | CAGTG | 3 cut(s) | 392, 412, 636 |
| BveI | ACCTGC | 1 cut(s) | 535 |
| Cac8I | GCNNGC | 2 cut(s) | 421, 689 |
| Csp6I | GTAC | 4 cut(s) | 31, 63, 278, 426 |
| CviAII | CATG | 1 cut(s) | 246 |
| CviQI | GTAC | 4 cut(s) | 31, 63, 278, 426 |
| DdeI | CTNAG | 4 cut(s) | 9, 531, 567, 683 |
| DpnI | GATC | 1 cut(s) | 219 |
| DpnII | GATC | 1 cut(s) | 217 |
| Eam1104I | CTCTTC | 1 cut(s) | 462 |
| EarI | CTCTTC | 1 cut(s) | 462 |
| Ecl136II | GAGCTC | 1 cut(s) | 253 |
| Eco147I | AGGCCT | 1 cut(s) | 355 |
| Eco24I | GRGCYC | 1 cut(s) | 255 |
| Eco53kI | GAGCTC | 1 cut(s) | 253 |
| EcoICRI | GAGCTC | 1 cut(s) | 253 |
| EcoRI | GAATTC | 1 cut(s) | 115 |
| EcoT38I | GRGCYC | 1 cut(s) | 255 |
| FaeI | CATG | 1 cut(s) | 249 |
| FaiI | YATR | 8 cut(s) | 159, 176, 189, 213, 247, 359, 402, 652 |
| FatI | CATG | 1 cut(s) | 245 |
| Fnu4HI | GCNGC | 3 cut(s) | 548, 551, 692 |
| FokI | GGATG | 1 cut(s) | 680 |
| FriOI | GRGCYC | 1 cut(s) | 255 |
| Fsp4HI | GCNGC | 3 cut(s) | 548, 551, 692 |
| FspBI | CTAG | 3 cut(s) | 87, 612, 739 |
| GluI | GCNGC | 3 cut(s) | 548, 551, 692 |
| HaeIII | GGCC | 1 cut(s) | 355 |
| Hin1II | CATG | 1 cut(s) | 249 |
| HinfI | GANTC | 6 cut(s) | 7, 264, 437, 470, 535, 541 |
| HphI | GGTGA | 1 cut(s) | 227 |
| Hpy166II | GTNNAC | 1 cut(s) | 280 |
| Hpy188I | TCNGA | 4 cut(s) | 121, 184, 534, 540 |
| Hpy188III | TCNNGA | 1 cut(s) | 589 |
| Hpy8I | GTNNAC | 1 cut(s) | 280 |
| Hpy99I | CGWCG | 1 cut(s) | 229 |
| HpyAV | CCTTC | 3 cut(s) | 231, 266, 374 |
| HpyCH4III | ACNGT | 5 cut(s) | 35, 67, 277, 396, 563 |
| HpyCH4V | TGCA | 4 cut(s) | 349, 423, 550, 691 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 416, 700 |
| HpyF3I | CTNAG | 4 cut(s) | 9, 531, 567, 683 |
| Hsp92II | CATG | 1 cut(s) | 249 |
| Kzo9I | GATC | 1 cut(s) | 217 |
| LmnI | GCTCC | 4 cut(s) | 185, 250, 258, 383 |
| LpnPI | CCDG | 5 cut(s) | 324, 418, 443, 459, 540 |
| Lsp1109I | GCAGC | 3 cut(s) | 534, 562, 703 |
| MaeI | CTAG | 3 cut(s) | 87, 612, 739 |
| MaeIII | GTNAC | 4 cut(s) | 369, 438, 453, 557 |
| MalI | GATC | 1 cut(s) | 219 |
| MboI | GATC | 1 cut(s) | 217 |
| MboII | GAAGA | 4 cut(s) | 56, 135, 341, 479 |
| MhlI | GDGCHC | 2 cut(s) | 255, 412 |
| MluCI | AATT | 6 cut(s) | 52, 115, 198, 318, 431, 443 |
| MlyI | GAGTC | 3 cut(s) | 446, 479, 550 |
| MmeI | TCCRAC | 3 cut(s) | 207, 463, 552 |
| MnlI | CCTC | 4 cut(s) | 83, 89, 610, 721 |
| MseI | TTAA | 4 cut(s) | 38, 51, 101, 344 |
| MslI | CAYNNNNRTG | 2 cut(s) | 162, 405 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 416, 700 |
| NdeII | GATC | 1 cut(s) | 217 |
| NlaIII | CATG | 1 cut(s) | 249 |
| NlaIV | GGNNCC | 1 cut(s) | 181 |
| NmuCI | GTSAC | 2 cut(s) | 438, 557 |
| PaqCI | CACCTGC | 1 cut(s) | 535 |
| PceI | AGGCCT | 1 cut(s) | 355 |
| PfeI | GAWTC | 2 cut(s) | 264, 535 |
| PkrI | GCNGC | 3 cut(s) | 549, 552, 693 |
| PleI | GAGTC | 3 cut(s) | 445, 478, 549 |
| PpsI | GAGTC | 3 cut(s) | 445, 478, 549 |
| Psp124BI | GAGCTC | 1 cut(s) | 255 |
| PspN4I | GGNNCC | 1 cut(s) | 181 |
| PstI | CTGCAG | 1 cut(s) | 552 |
| RsaI | GTAC | 4 cut(s) | 32, 64, 279, 427 |
| RsaNI | GTAC | 4 cut(s) | 31, 63, 278, 426 |
| RseI | CAYNNNNRTG | 2 cut(s) | 162, 405 |
| SacI | GAGCTC | 1 cut(s) | 255 |
| SaqAI | TTAA | 4 cut(s) | 38, 51, 101, 344 |
| SatI | GCNGC | 3 cut(s) | 548, 551, 692 |
| Sau3AI | GATC | 1 cut(s) | 217 |
| SchI | GAGTC | 3 cut(s) | 446, 479, 550 |
| SduI | GDGCHC | 2 cut(s) | 255, 412 |
| SfcI | CTRYAG | 2 cut(s) | 174, 548 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 162, 405 |
| Sse9I | AATT | 6 cut(s) | 52, 115, 198, 318, 431, 443 |
| SseBI | AGGCCT | 1 cut(s) | 355 |
| SspI | AATATT | 1 cut(s) | 508 |
| SspMI | CTAG | 3 cut(s) | 87, 612, 739 |
| SstI | GAGCTC | 1 cut(s) | 255 |
| StuI | AGGCCT | 1 cut(s) | 355 |
| TaaI | ACNGT | 5 cut(s) | 35, 67, 277, 396, 563 |
| TaqI | TCGA | 2 cut(s) | 224, 705 |
| TasI | AATT | 6 cut(s) | 52, 115, 198, 318, 431, 443 |
| TatI | WGTACW | 4 cut(s) | 30, 62, 277, 425 |
| TfiI | GAWTC | 2 cut(s) | 264, 535 |
| Tru1I | TTAA | 4 cut(s) | 38, 51, 101, 344 |
| Tru9I | TTAA | 4 cut(s) | 38, 51, 101, 344 |
| TscAI | CASTG | 3 cut(s) | 399, 412, 636 |
| TseFI | GTSAC | 2 cut(s) | 438, 557 |
| TseI | GCWGC | 3 cut(s) | 547, 550, 691 |
| Tsp45I | GTSAC | 2 cut(s) | 438, 557 |
| TspDTI | ATGAA | 3 cut(s) | 300, 503, 684 |
| TspRI | CASTG | 3 cut(s) | 399, 412, 636 |
| XapI | RAATTY | 1 cut(s) | 115 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 412 |
| XspI | CTAG | 3 cut(s) | 87, 612, 739 |