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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 90 |
| AciI | CCGC | 7 cut(s) | 146, 449, 496, 656, 871, 925, 942 |
| AclWI | GGATC | 2 cut(s) | 433, 435 |
| AcuI | CTGAAG | 1 cut(s) | 827 |
| AdeI | CACNNNGTG | 1 cut(s) | 158 |
| AfaI | GTAC | 2 cut(s) | 54, 888 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 290 |
| AgsI | TTSAA | 3 cut(s) | 7, 233, 322 |
| AjnI | CCWGG | 1 cut(s) | 791 |
| AluBI | AGCT | 1 cut(s) | 587 |
| AluI | AGCT | 1 cut(s) | 587 |
| Alw26I | GTCTC | 7 cut(s) | 130, 643, 667, 689, 713, 763, 957 |
| AlwI | GGATC | 2 cut(s) | 433, 435 |
| ApeKI | GCWGC | 3 cut(s) | 64, 476, 524 |
| AspS9I | GGNCC | 1 cut(s) | 161 |
| AsuC2I | CCSGG | 1 cut(s) | 156 |
| AsuHPI | GGTGA | 2 cut(s) | 720, 744 |
| AvaII | GGWCC | 1 cut(s) | 161 |
| AxyI | CCTNAGG | 1 cut(s) | 339 |
| BaeGI | GKGCMC | 2 cut(s) | 174, 379 |
| BanI | GGYRCC | 1 cut(s) | 90 |
| BbvCI | CCTCAGC | 1 cut(s) | 285 |
| BbvI | GCAGC | 3 cut(s) | 51, 463, 511 |
| BccI | CCATC | 3 cut(s) | 787, 814, 967 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 440, 474 |
| BciT130I | CCWGG | 1 cut(s) | 793 |
| BciVI | GTATCC | 1 cut(s) | 197 |
| BclI | TGATCA | 2 cut(s) | 238, 912 |
| BcnI | CCSGG | 1 cut(s) | 156 |
| BcoDI | GTCTC | 7 cut(s) | 130, 643, 667, 689, 713, 763, 957 |
| BfaI | CTAG | 1 cut(s) | 588 |
| BfuI | GTATCC | 1 cut(s) | 197 |
| BisI | GCNGC | 4 cut(s) | 65, 477, 525, 943 |
| BlsI | GCNGC | 4 cut(s) | 66, 478, 526, 944 |
| Bme1390I | CCNGG | 2 cut(s) | 156, 793 |
| Bme18I | GGWCC | 1 cut(s) | 161 |
| BmgT120I | GGNCC | 1 cut(s) | 161 |
| BmiI | GGNNCC | 3 cut(s) | 92, 315, 897 |
| BmrFI | CCNGG | 2 cut(s) | 156, 793 |
| BmsI | GCATC | 3 cut(s) | 460, 699, 771 |
| BpmI | CTGGAG | 1 cut(s) | 114 |
| Bpu10I | CCTNAGC | 1 cut(s) | 285 |
| BpuMI | CCSGG | 1 cut(s) | 156 |
| BsaAI | YACGTR | 1 cut(s) | 380 |
| BsaBI | GATNNNNATC | 1 cut(s) | 437 |
| BsaI | GGTCTC | 1 cut(s) | 957 |
| BsaJI | CCNNGG | 2 cut(s) | 542, 890 |
| BsaWI | WCCGGW | 1 cut(s) | 87 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 815, 845 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 290 |
| Bse118I | RCCGGY | 1 cut(s) | 527 |
| Bse1I | ACTGG | 2 cut(s) | 364, 899 |
| Bse21I | CCTNAGG | 1 cut(s) | 339 |
| Bse3DI | GCAATG | 5 cut(s) | 74, 594, 618, 786, 915 |
| Bse8I | GATNNNNATC | 1 cut(s) | 437 |
| BseBI | CCWGG | 1 cut(s) | 793 |
| BseDI | CCNNGG | 2 cut(s) | 542, 890 |
| BseJI | GATNNNNATC | 1 cut(s) | 437 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 290 |
| BseMI | GCAATG | 5 cut(s) | 74, 594, 618, 786, 915 |
| BseMII | CTCAG | 4 cut(s) | 299, 330, 414, 830 |
| BseNI | ACTGG | 2 cut(s) | 364, 899 |
| BseRI | GAGGAG | 1 cut(s) | 531 |
| BseSI | GKGCMC | 2 cut(s) | 174, 379 |
| BseXI | GCAGC | 3 cut(s) | 51, 463, 511 |
| Bsh1285I | CGRYCG | 2 cut(s) | 449, 859 |
| BshNI | GGYRCC | 1 cut(s) | 90 |
| BsiEI | CGRYCG | 2 cut(s) | 449, 859 |
| BsiSI | CCGG | 3 cut(s) | 88, 155, 528 |
| BslFI | GGGAC | 1 cut(s) | 826 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 290 |
| BsmAI | GTCTC | 7 cut(s) | 130, 643, 667, 689, 713, 763, 957 |
| BsmFI | GGGAC | 1 cut(s) | 826 |
| BsmI | GAATGC | 1 cut(s) | 738 |
| Bso31I | GGTCTC | 1 cut(s) | 957 |
| Bsp1286I | GDGCHC | 2 cut(s) | 174, 379 |
| Bsp143I | GATC | 6 cut(s) | 238, 427, 438, 856, 880, 912 |
| BspACI | CCGC | 7 cut(s) | 146, 449, 496, 656, 871, 925, 942 |
| BspCNI | CTCAG | 4 cut(s) | 298, 331, 415, 829 |
| BspLI | GGNNCC | 3 cut(s) | 92, 315, 897 |
| BspPI | GGATC | 2 cut(s) | 433, 435 |
| BspT107I | GGYRCC | 1 cut(s) | 90 |
| BspTNI | GGTCTC | 1 cut(s) | 957 |
| BsrDI | GCAATG | 5 cut(s) | 74, 594, 618, 786, 915 |
| BsrFI | RCCGGY | 1 cut(s) | 527 |
| BsrI | ACTGG | 2 cut(s) | 364, 899 |
| BssAI | RCCGGY | 1 cut(s) | 527 |
| BssECI | CCNNGG | 2 cut(s) | 542, 890 |
| BssMI | GATC | 6 cut(s) | 238, 427, 438, 856, 880, 912 |
| BssT1I | CCWWGG | 1 cut(s) | 890 |
| Bst2UI | CCWGG | 1 cut(s) | 793 |
| Bst4CI | ACNGT | 2 cut(s) | 121, 185 |
| Bst6I | CTCTTC | 1 cut(s) | 585 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 521, 939 |
| BstBAI | YACGTR | 1 cut(s) | 380 |
| BstDEI | CTNAG | 4 cut(s) | 285, 339, 423, 816 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 288 |
| BstKTI | GATC | 6 cut(s) | 241, 430, 441, 859, 883, 915 |
| BstMAI | GTCTC | 7 cut(s) | 130, 643, 667, 689, 713, 763, 957 |
| BstMBI | GATC | 6 cut(s) | 238, 427, 438, 856, 880, 912 |
| BstMCI | CGRYCG | 2 cut(s) | 449, 859 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 521, 939 |
| BstNI | CCWGG | 1 cut(s) | 793 |
| BstNSI | RCATGY | 1 cut(s) | 483 |
| BstSCI | CCNGG | 2 cut(s) | 154, 791 |
| BstSLI | GKGCMC | 2 cut(s) | 174, 379 |
| BstV1I | GCAGC | 3 cut(s) | 51, 463, 511 |
| BstX2I | RGATCY | 2 cut(s) | 427, 438 |
| BstYI | RGATCY | 2 cut(s) | 427, 438 |
| Bsu36I | CCTNAGG | 1 cut(s) | 339 |
| BsuI | GTATCC | 1 cut(s) | 197 |
| BtsI | GCAGTG | 1 cut(s) | 370 |
| BtsIMutI | CAGTG | 1 cut(s) | 370 |
| Cfr10I | RCCGGY | 1 cut(s) | 527 |
| Cfr13I | GGNCC | 1 cut(s) | 161 |
| CseI | GACGC | 1 cut(s) | 2 |
| Csp6I | GTAC | 2 cut(s) | 53, 887 |
| CviAII | CATG | 6 cut(s) | 227, 372, 480, 783, 850, 939 |
| CviJI | RGCY | 6 cut(s) | 115, 547, 568, 587, 878, 945 |
| CviKI_1 | RGCY | 6 cut(s) | 115, 547, 568, 587, 878, 945 |
| CviQI | GTAC | 2 cut(s) | 53, 887 |
| DdeI | CTNAG | 4 cut(s) | 285, 339, 423, 816 |
| DpnI | GATC | 6 cut(s) | 240, 429, 440, 858, 882, 914 |
| DpnII | GATC | 6 cut(s) | 238, 427, 438, 856, 880, 912 |
| DraIII | CACNNNGTG | 1 cut(s) | 158 |
| Eam1104I | CTCTTC | 1 cut(s) | 585 |
| EarI | CTCTTC | 1 cut(s) | 585 |
| Eco130I | CCWWGG | 1 cut(s) | 890 |
| Eco31I | GGTCTC | 1 cut(s) | 957 |
| Eco47I | GGWCC | 1 cut(s) | 161 |
| Eco57I | CTGAAG | 1 cut(s) | 827 |
| Eco81I | CCTNAGG | 1 cut(s) | 339 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 288 |
| EcoRII | CCWGG | 1 cut(s) | 791 |
| EcoT14I | CCWWGG | 1 cut(s) | 890 |
| EcoT22I | ATGCAT | 1 cut(s) | 788 |
| ErhI | CCWWGG | 1 cut(s) | 890 |
| FaeI | CATG | 6 cut(s) | 230, 375, 483, 786, 853, 942 |
| FaqI | GGGAC | 1 cut(s) | 826 |
| FatI | CATG | 6 cut(s) | 226, 371, 479, 782, 849, 938 |
| FauI | CCCGC | 1 cut(s) | 864 |
| FbaI | TGATCA | 2 cut(s) | 238, 912 |
| Fnu4HI | GCNGC | 4 cut(s) | 65, 477, 525, 943 |
| Fsp4HI | GCNGC | 4 cut(s) | 65, 477, 525, 943 |
| FspBI | CTAG | 1 cut(s) | 588 |
| GluI | GCNGC | 4 cut(s) | 65, 477, 525, 943 |
| GsuI | CTGGAG | 1 cut(s) | 114 |
| HapII | CCGG | 3 cut(s) | 88, 155, 528 |
| HgaI | GACGC | 1 cut(s) | 2 |
| Hin1II | CATG | 6 cut(s) | 230, 375, 483, 786, 853, 942 |
| HincII | GTYRAC | 1 cut(s) | 798 |
| HindII | GTYRAC | 1 cut(s) | 798 |
| HinfI | GANTC | 2 cut(s) | 247, 814 |
| HpaII | CCGG | 3 cut(s) | 88, 155, 528 |
| HphI | GGTGA | 2 cut(s) | 720, 744 |
| Hpy166II | GTNNAC | 2 cut(s) | 161, 798 |
| Hpy188I | TCNGA | 5 cut(s) | 105, 424, 432, 744, 819 |
| Hpy188III | TCNNGA | 3 cut(s) | 251, 694, 766 |
| Hpy8I | GTNNAC | 2 cut(s) | 161, 798 |
| HpyAV | CCTTC | 3 cut(s) | 299, 424, 717 |
| HpyCH4III | ACNGT | 2 cut(s) | 121, 185 |
| HpyCH4IV | ACGT | 1 cut(s) | 379 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 521, 939 |
| HpyF3I | CTNAG | 4 cut(s) | 285, 339, 423, 816 |
| HpySE526I | ACGT | 1 cut(s) | 379 |
| Hsp92II | CATG | 6 cut(s) | 230, 375, 483, 786, 853, 942 |
| Ksp22I | TGATCA | 2 cut(s) | 238, 912 |
| Kzo9I | GATC | 6 cut(s) | 238, 427, 438, 856, 880, 912 |
| LmnI | GCTCC | 2 cut(s) | 544, 609 |
| Lsp1109I | GCAGC | 3 cut(s) | 51, 463, 511 |
| LweI | GCATC | 3 cut(s) | 460, 699, 771 |
| MaeI | CTAG | 1 cut(s) | 588 |
| MaeII | ACGT | 1 cut(s) | 379 |
| MaeIII | GTNAC | 1 cut(s) | 333 |
| MalI | GATC | 6 cut(s) | 240, 429, 440, 858, 882, 914 |
| MboI | GATC | 6 cut(s) | 238, 427, 438, 856, 880, 912 |
| MboII | GAAGA | 6 cut(s) | 43, 356, 572, 830, 833, 985 |
| MflI | RGATCY | 2 cut(s) | 427, 438 |
| MhlI | GDGCHC | 2 cut(s) | 174, 379 |
| MluCI | AATT | 1 cut(s) | 23 |
| MlyI | GAGTC | 1 cut(s) | 808 |
| Mph1103I | ATGCAT | 1 cut(s) | 788 |
| MseI | TTAA | 1 cut(s) | 272 |
| MslI | CAYNNNNRTG | 1 cut(s) | 920 |
| MspI | CCGG | 3 cut(s) | 88, 155, 528 |
| MspR9I | CCNGG | 2 cut(s) | 156, 793 |
| Mva1269I | GAATGC | 1 cut(s) | 738 |
| MvaI | CCWGG | 1 cut(s) | 793 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 521, 939 |
| NciI | CCSGG | 1 cut(s) | 156 |
| NdeII | GATC | 6 cut(s) | 238, 427, 438, 856, 880, 912 |
| NlaIII | CATG | 6 cut(s) | 230, 375, 483, 786, 853, 942 |
| NlaIV | GGNNCC | 3 cut(s) | 92, 315, 897 |
| NmeAIII | GCCGAG | 1 cut(s) | 523 |
| NsiI | ATGCAT | 1 cut(s) | 788 |
| NspI | RCATGY | 1 cut(s) | 483 |
| PctI | GAATGC | 1 cut(s) | 738 |
| PfeI | GAWTC | 1 cut(s) | 247 |
| PkrI | GCNGC | 4 cut(s) | 66, 478, 526, 944 |
| Ple19I | CGATCG | 1 cut(s) | 859 |
| PleI | GAGTC | 1 cut(s) | 808 |
| PpsI | GAGTC | 1 cut(s) | 808 |
| Ppu21I | YACGTR | 1 cut(s) | 380 |
| Psp6I | CCWGG | 1 cut(s) | 791 |
| PspGI | CCWGG | 1 cut(s) | 791 |
| PspN4I | GGNNCC | 3 cut(s) | 92, 315, 897 |
| PspPI | GGNCC | 1 cut(s) | 161 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 879, 911 |
| PsuI | RGATCY | 2 cut(s) | 427, 438 |
| PvuI | CGATCG | 1 cut(s) | 859 |
| RsaI | GTAC | 2 cut(s) | 54, 888 |
| RsaNI | GTAC | 2 cut(s) | 53, 887 |
| RseI | CAYNNNNRTG | 1 cut(s) | 920 |
| SaqAI | TTAA | 1 cut(s) | 272 |
| SatI | GCNGC | 4 cut(s) | 65, 477, 525, 943 |
| Sau3AI | GATC | 6 cut(s) | 238, 427, 438, 856, 880, 912 |
| Sau96I | GGNCC | 1 cut(s) | 161 |
| SchI | GAGTC | 1 cut(s) | 808 |
| ScrFI | CCNGG | 2 cut(s) | 156, 793 |
| SduI | GDGCHC | 2 cut(s) | 174, 379 |
| SfaNI | GCATC | 3 cut(s) | 460, 699, 771 |
| SinI | GGWCC | 1 cut(s) | 161 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 920 |
| Sse9I | AATT | 1 cut(s) | 23 |
| SsiI | CCGC | 7 cut(s) | 146, 449, 496, 656, 871, 925, 942 |
| SspMI | CTAG | 1 cut(s) | 588 |
| StyD4I | CCNGG | 2 cut(s) | 154, 791 |
| StyI | CCWWGG | 1 cut(s) | 890 |
| TaaI | ACNGT | 2 cut(s) | 121, 185 |
| TaiI | ACGT | 1 cut(s) | 382 |
| TaqI | TCGA | 4 cut(s) | 21, 252, 693, 855 |
| TasI | AATT | 1 cut(s) | 23 |
| TatI | WGTACW | 1 cut(s) | 52 |
| TauI | GCSGC | 1 cut(s) | 945 |
| TfiI | GAWTC | 1 cut(s) | 247 |
| Tru1I | TTAA | 1 cut(s) | 272 |
| Tru9I | TTAA | 1 cut(s) | 272 |
| TscAI | CASTG | 1 cut(s) | 370 |
| TseI | GCWGC | 3 cut(s) | 64, 476, 524 |
| TspDTI | ATGAA | 3 cut(s) | 215, 318, 927 |
| TspGWI | ACGGA | 1 cut(s) | 893 |
| TspRI | CASTG | 1 cut(s) | 370 |
| VpaK11BI | GGWCC | 1 cut(s) | 161 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 288 |
| XceI | RCATGY | 1 cut(s) | 483 |
| XspI | CTAG | 1 cut(s) | 588 |
| Zsp2I | ATGCAT | 1 cut(s) | 788 |