ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 424 |
| AclI | AACGTT | 1 cut(s) | 553 |
| AclWI | GGATC | 3 cut(s) | 189, 740, 760 |
| AcsI | RAATTY | 2 cut(s) | 118, 472 |
| AcuI | CTGAAG | 1 cut(s) | 692 |
| AfaI | GTAC | 2 cut(s) | 96, 713 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 202, 323, 643, 787 |
| AgsI | TTSAA | 6 cut(s) | 503, 514, 558, 566, 873, 914 |
| AjiI | CACGTC | 1 cut(s) | 230 |
| AjnI | CCWGG | 3 cut(s) | 71, 682, 880 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 538, 570 |
| AluBI | AGCT | 5 cut(s) | 20, 597, 726, 755, 986 |
| AluI | AGCT | 5 cut(s) | 20, 597, 726, 755, 986 |
| Alw26I | GTCTC | 2 cut(s) | 530, 541 |
| AlwI | GGATC | 3 cut(s) | 189, 740, 760 |
| Ama87I | CYCGRG | 2 cut(s) | 150, 786 |
| AoxI | GGCC | 2 cut(s) | 75, 495 |
| ApoI | RAATTY | 2 cut(s) | 118, 472 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 35, 67 |
| AspS9I | GGNCC | 5 cut(s) | 75, 463, 496, 672, 884 |
| AsuHPI | GGTGA | 5 cut(s) | 61, 304, 463, 698, 821 |
| AsuII | TTCGAA | 1 cut(s) | 255 |
| AsuNHI | GCTAGC | 1 cut(s) | 722 |
| AvaI | CYCGRG | 2 cut(s) | 150, 786 |
| AvaII | GGWCC | 3 cut(s) | 463, 672, 884 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 147, 179 |
| BccI | CCATC | 3 cut(s) | 448, 612, 884 |
| BciT130I | CCWGG | 3 cut(s) | 73, 684, 882 |
| BciVI | GTATCC | 3 cut(s) | 150, 439, 788 |
| BclI | TGATCA | 1 cut(s) | 294 |
| BcoDI | GTCTC | 2 cut(s) | 530, 541 |
| BfaI | CTAG | 1 cut(s) | 723 |
| BfmI | CTRYAG | 1 cut(s) | 750 |
| BfuI | GTATCC | 3 cut(s) | 150, 439, 788 |
| BmcAI | AGTACT | 1 cut(s) | 713 |
| Bme1390I | CCNGG | 3 cut(s) | 73, 684, 882 |
| Bme18I | GGWCC | 3 cut(s) | 463, 672, 884 |
| BmeT110I | CYCGRG | 2 cut(s) | 150, 786 |
| BmgBI | CACGTC | 1 cut(s) | 230 |
| BmgT120I | GGNCC | 5 cut(s) | 75, 463, 496, 672, 884 |
| BmiI | GGNNCC | 2 cut(s) | 635, 822 |
| BmrFI | CCNGG | 3 cut(s) | 73, 684, 882 |
| BmrI | ACTGGG | 1 cut(s) | 312 |
| BmsI | GCATC | 4 cut(s) | 411, 623, 852, 999 |
| BmtI | GCTAGC | 1 cut(s) | 726 |
| BmuI | ACTGGG | 1 cut(s) | 312 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 509, 541 |
| BpmI | CTGGAG | 2 cut(s) | 207, 345 |
| Bpu14I | TTCGAA | 1 cut(s) | 255 |
| Bsa29I | ATCGAT | 1 cut(s) | 82 |
| BsaJI | CCNNGG | 3 cut(s) | 72, 785, 973 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 538, 568 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 202, 323, 643, 787 |
| Bse1I | ACTGG | 3 cut(s) | 307, 328, 675 |
| BseBI | CCWGG | 3 cut(s) | 73, 684, 882 |
| BseCI | ATCGAT | 1 cut(s) | 82 |
| BseDI | CCNNGG | 3 cut(s) | 72, 785, 973 |
| BseGI | GGATG | 2 cut(s) | 838, 931 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 202, 323, 643, 787 |
| BseMII | CTCAG | 3 cut(s) | 161, 394, 726 |
| BseNI | ACTGG | 3 cut(s) | 307, 328, 675 |
| BseRI | GAGGAG | 1 cut(s) | 185 |
| BshFI | GGCC | 2 cut(s) | 77, 497 |
| BshVI | ATCGAT | 1 cut(s) | 82 |
| BsiHKCI | CYCGRG | 2 cut(s) | 150, 786 |
| BslFI | GGGAC | 2 cut(s) | 174, 883 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 202, 323, 643, 787 |
| BsmAI | GTCTC | 2 cut(s) | 530, 541 |
| BsmFI | GGGAC | 2 cut(s) | 174, 883 |
| BsnI | GGCC | 2 cut(s) | 77, 497 |
| BsoBI | CYCGRG | 2 cut(s) | 150, 786 |
| Bsp119I | TTCGAA | 1 cut(s) | 255 |
| Bsp143I | GATC | 6 cut(s) | 181, 294, 489, 583, 745, 765 |
| BspACI | CCGC | 1 cut(s) | 424 |
| BspANI | GGCC | 2 cut(s) | 77, 497 |
| BspCNI | CTCAG | 3 cut(s) | 162, 393, 727 |
| BspDI | ATCGAT | 1 cut(s) | 82 |
| BspLI | GGNNCC | 2 cut(s) | 635, 822 |
| BspOI | GCTAGC | 1 cut(s) | 726 |
| BspPI | GGATC | 3 cut(s) | 189, 740, 760 |
| BspT104I | TTCGAA | 1 cut(s) | 255 |
| BsrI | ACTGG | 3 cut(s) | 307, 328, 675 |
| BssECI | CCNNGG | 3 cut(s) | 72, 785, 973 |
| BssMI | GATC | 6 cut(s) | 181, 294, 489, 583, 745, 765 |
| BssT1I | CCWWGG | 1 cut(s) | 973 |
| Bst2UI | CCWGG | 3 cut(s) | 73, 684, 882 |
| Bst4CI | ACNGT | 3 cut(s) | 188, 451, 638 |
| Bst6I | CTCTTC | 1 cut(s) | 168 |
| BstBI | TTCGAA | 1 cut(s) | 255 |
| BstC8I | GCNNGC | 3 cut(s) | 650, 724, 988 |
| BstDEI | CTNAG | 3 cut(s) | 170, 380, 735 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 200 |
| BstF5I | GGATG | 2 cut(s) | 838, 931 |
| BstKTI | GATC | 6 cut(s) | 184, 297, 492, 586, 748, 768 |
| BstMAI | GTCTC | 2 cut(s) | 530, 541 |
| BstMBI | GATC | 6 cut(s) | 181, 294, 489, 583, 745, 765 |
| BstNI | CCWGG | 3 cut(s) | 73, 684, 882 |
| BstNSI | RCATGY | 2 cut(s) | 114, 898 |
| BstSCI | CCNGG | 3 cut(s) | 71, 682, 880 |
| BstSFI | CTRYAG | 1 cut(s) | 750 |
| Bsu15I | ATCGAT | 1 cut(s) | 82 |
| BsuI | GTATCC | 3 cut(s) | 150, 439, 788 |
| BsuRI | GGCC | 2 cut(s) | 77, 497 |
| BsuTUI | ATCGAT | 1 cut(s) | 82 |
| BtrI | CACGTC | 1 cut(s) | 230 |
| BtsCI | GGATG | 2 cut(s) | 838, 931 |
| BtsI | GCAGTG | 1 cut(s) | 465 |
| BtsIMutI | CAGTG | 3 cut(s) | 184, 465, 682 |
| Cac8I | GCNNGC | 3 cut(s) | 650, 724, 988 |
| Cfr13I | GGNCC | 5 cut(s) | 75, 463, 496, 672, 884 |
| ClaI | ATCGAT | 1 cut(s) | 82 |
| CseI | GACGC | 1 cut(s) | 252 |
| CsiI | ACCWGGT | 1 cut(s) | 682 |
| Csp6I | GTAC | 2 cut(s) | 95, 712 |
| CviAII | CATG | 4 cut(s) | 46, 111, 817, 895 |
| CviQI | GTAC | 2 cut(s) | 95, 712 |
| DdeI | CTNAG | 3 cut(s) | 170, 380, 735 |
| DpnI | GATC | 6 cut(s) | 183, 296, 491, 585, 747, 767 |
| DpnII | GATC | 6 cut(s) | 181, 294, 489, 583, 745, 765 |
| Eam1104I | CTCTTC | 1 cut(s) | 168 |
| EarI | CTCTTC | 1 cut(s) | 168 |
| Eco130I | CCWWGG | 1 cut(s) | 973 |
| Eco47I | GGWCC | 3 cut(s) | 463, 672, 884 |
| Eco57I | CTGAAG | 1 cut(s) | 692 |
| Eco88I | CYCGRG | 2 cut(s) | 150, 786 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 200 |
| EcoO109I | RGGNCCY | 1 cut(s) | 496 |
| EcoRI | GAATTC | 1 cut(s) | 472 |
| EcoRII | CCWGG | 3 cut(s) | 71, 682, 880 |
| EcoT14I | CCWWGG | 1 cut(s) | 973 |
| ErhI | CCWWGG | 1 cut(s) | 973 |
| FaeI | CATG | 4 cut(s) | 49, 114, 820, 898 |
| FaiI | YATR | 9 cut(s) | 47, 112, 717, 752, 758, 803, 818, 896, 1016 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 84, 116 |
| FaqI | GGGAC | 2 cut(s) | 174, 883 |
| FatI | CATG | 4 cut(s) | 45, 110, 816, 894 |
| FbaI | TGATCA | 1 cut(s) | 294 |
| FokI | GGATG | 2 cut(s) | 845, 938 |
| FspBI | CTAG | 1 cut(s) | 723 |
| GsuI | CTGGAG | 2 cut(s) | 207, 345 |
| HaeIII | GGCC | 2 cut(s) | 77, 497 |
| HgaI | GACGC | 1 cut(s) | 252 |
| Hin1II | CATG | 4 cut(s) | 49, 114, 820, 898 |
| HindIII | AAGCTT | 1 cut(s) | 984 |
| HinfI | GANTC | 7 cut(s) | 9, 84, 172, 252, 329, 619, 760 |
| HphI | GGTGA | 5 cut(s) | 61, 304, 463, 698, 821 |
| Hpy166II | GTNNAC | 3 cut(s) | 463, 680, 812 |
| Hpy188III | TCNNGA | 6 cut(s) | 150, 212, 240, 298, 418, 575 |
| Hpy8I | GTNNAC | 3 cut(s) | 463, 680, 812 |
| Hpy99I | CGWCG | 3 cut(s) | 234, 246, 612 |
| HpyAV | CCTTC | 6 cut(s) | 327, 383, 386, 509, 618, 879 |
| HpyCH4III | ACNGT | 3 cut(s) | 188, 451, 638 |
| HpyCH4IV | ACGT | 3 cut(s) | 229, 409, 553 |
| HpyCH4V | TGCA | 2 cut(s) | 865, 990 |
| HpyF3I | CTNAG | 3 cut(s) | 170, 380, 735 |
| HpySE526I | ACGT | 3 cut(s) | 229, 409, 553 |
| Hsp92II | CATG | 4 cut(s) | 49, 114, 820, 898 |
| Ksp22I | TGATCA | 1 cut(s) | 294 |
| Kzo9I | GATC | 6 cut(s) | 181, 294, 489, 583, 745, 765 |
| LmnI | GCTCC | 2 cut(s) | 627, 826 |
| LweI | GCATC | 4 cut(s) | 411, 623, 852, 999 |
| MabI | ACCWGGT | 1 cut(s) | 682 |
| MaeI | CTAG | 1 cut(s) | 723 |
| MaeII | ACGT | 3 cut(s) | 229, 409, 553 |
| MaeIII | GTNAC | 3 cut(s) | 519, 691, 790 |
| MalI | GATC | 6 cut(s) | 183, 296, 491, 585, 747, 767 |
| MboI | GATC | 6 cut(s) | 181, 294, 489, 583, 745, 765 |
| MboII | GAAGA | 4 cut(s) | 155, 269, 368, 592 |
| MluCI | AATT | 4 cut(s) | 118, 354, 472, 503 |
| MlyI | GAGTC | 1 cut(s) | 181 |
| MmeI | TCCRAC | 5 cut(s) | 37, 365, 423, 427, 805 |
| MnlI | CCTC | 8 cut(s) | 196, 203, 206, 231, 247, 571, 712, 795 |
| MseI | TTAA | 5 cut(s) | 207, 357, 428, 642, 969 |
| MslI | CAYNNNNRTG | 1 cut(s) | 483 |
| MspR9I | CCNGG | 3 cut(s) | 73, 684, 882 |
| MvaI | CCWGG | 3 cut(s) | 73, 684, 882 |
| NdeII | GATC | 6 cut(s) | 181, 294, 489, 583, 745, 765 |
| NheI | GCTAGC | 1 cut(s) | 722 |
| NlaIII | CATG | 4 cut(s) | 49, 114, 820, 898 |
| NlaIV | GGNNCC | 2 cut(s) | 635, 822 |
| NmuCI | GTSAC | 1 cut(s) | 790 |
| NspI | RCATGY | 2 cut(s) | 114, 898 |
| NspV | TTCGAA | 1 cut(s) | 255 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 238, 247 |
| PfeI | GAWTC | 6 cut(s) | 9, 84, 252, 329, 619, 760 |
| PfoI | TCCNGGA | 1 cut(s) | 880 |
| PleI | GAGTC | 1 cut(s) | 180 |
| PpsI | GAGTC | 1 cut(s) | 180 |
| Psp1406I | AACGTT | 1 cut(s) | 553 |
| Psp6I | CCWGG | 3 cut(s) | 71, 682, 880 |
| PspGI | CCWGG | 3 cut(s) | 71, 682, 880 |
| PspN4I | GGNNCC | 2 cut(s) | 635, 822 |
| PspPI | GGNCC | 5 cut(s) | 75, 463, 496, 672, 884 |
| RsaI | GTAC | 2 cut(s) | 96, 713 |
| RsaNI | GTAC | 2 cut(s) | 95, 712 |
| RseI | CAYNNNNRTG | 1 cut(s) | 483 |
| SaqAI | TTAA | 5 cut(s) | 207, 357, 428, 642, 969 |
| Sau3AI | GATC | 6 cut(s) | 181, 294, 489, 583, 745, 765 |
| Sau96I | GGNCC | 5 cut(s) | 75, 463, 496, 672, 884 |
| ScaI | AGTACT | 1 cut(s) | 713 |
| SchI | GAGTC | 1 cut(s) | 181 |
| ScrFI | CCNGG | 3 cut(s) | 73, 684, 882 |
| SexAI | ACCWGGT | 1 cut(s) | 682 |
| SfaNI | GCATC | 4 cut(s) | 411, 623, 852, 999 |
| SfcI | CTRYAG | 1 cut(s) | 750 |
| SfuI | TTCGAA | 1 cut(s) | 255 |
| SinI | GGWCC | 3 cut(s) | 463, 672, 884 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 483 |
| Sse9I | AATT | 4 cut(s) | 118, 354, 472, 503 |
| SsiI | CCGC | 1 cut(s) | 424 |
| SspI | AATATT | 1 cut(s) | 700 |
| SspMI | CTAG | 1 cut(s) | 723 |
| StyD4I | CCNGG | 3 cut(s) | 71, 682, 880 |
| StyI | CCWWGG | 1 cut(s) | 973 |
| TaaI | ACNGT | 3 cut(s) | 188, 451, 638 |
| TaiI | ACGT | 3 cut(s) | 232, 412, 556 |
| TaqI | TCGA | 9 cut(s) | 82, 241, 250, 255, 417, 574, 607, 617, 622 |
| TasI | AATT | 4 cut(s) | 118, 354, 472, 503 |
| TatI | WGTACW | 1 cut(s) | 711 |
| TfiI | GAWTC | 6 cut(s) | 9, 84, 252, 329, 619, 760 |
| Tru1I | TTAA | 5 cut(s) | 207, 357, 428, 642, 969 |
| Tru9I | TTAA | 5 cut(s) | 207, 357, 428, 642, 969 |
| TscAI | CASTG | 3 cut(s) | 191, 465, 682 |
| TseFI | GTSAC | 1 cut(s) | 790 |
| Tsp45I | GTSAC | 1 cut(s) | 790 |
| TspDTI | ATGAA | 3 cut(s) | 405, 773, 818 |
| TspGWI | ACGGA | 1 cut(s) | 809 |
| TspRI | CASTG | 3 cut(s) | 191, 465, 682 |
| VpaK11BI | GGWCC | 3 cut(s) | 463, 672, 884 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 200 |
| XapI | RAATTY | 2 cut(s) | 118, 472 |
| XceI | RCATGY | 2 cut(s) | 114, 898 |
| XspI | CTAG | 1 cut(s) | 723 |
| ZrmI | AGTACT | 1 cut(s) | 713 |