ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 116 |
| AccII | CGCG | 1 cut(s) | 180 |
| AciI | CCGC | 4 cut(s) | 68, 78, 154, 442 |
| AcuI | CTGAAG | 1 cut(s) | 393 |
| AgsI | TTSAA | 1 cut(s) | 308 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 38, 70 |
| AluBI | AGCT | 1 cut(s) | 479 |
| AluI | AGCT | 1 cut(s) | 479 |
| Ama87I | CYCGRG | 1 cut(s) | 217 |
| ApeKI | GCWGC | 2 cut(s) | 101, 439 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 382, 414 |
| AspLEI | GCGC | 2 cut(s) | 111, 180 |
| AspS9I | GGNCC | 1 cut(s) | 379 |
| AsuC2I | CCSGG | 1 cut(s) | 38 |
| AsuHPI | GGTGA | 1 cut(s) | 206 |
| AvaI | CYCGRG | 1 cut(s) | 217 |
| AvaII | GGWCC | 1 cut(s) | 379 |
| BaeGI | GKGCMC | 1 cut(s) | 322 |
| BanII | GRGCYC | 1 cut(s) | 62 |
| BbvI | GCAGC | 2 cut(s) | 88, 451 |
| BccI | CCATC | 1 cut(s) | 351 |
| BceAI | ACGGC | 1 cut(s) | 338 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 263, 281, 297, 315 |
| BclI | TGATCA | 2 cut(s) | 127, 229 |
| BcnI | CCSGG | 1 cut(s) | 38 |
| BisI | GCNGC | 4 cut(s) | 69, 79, 102, 440 |
| BlsI | GCNGC | 4 cut(s) | 70, 80, 103, 441 |
| Bme1390I | CCNGG | 1 cut(s) | 38 |
| Bme18I | GGWCC | 1 cut(s) | 379 |
| BmeT110I | CYCGRG | 1 cut(s) | 217 |
| BmgT120I | GGNCC | 1 cut(s) | 379 |
| BmiI | GGNNCC | 2 cut(s) | 380, 381 |
| BmrFI | CCNGG | 1 cut(s) | 38 |
| BmsI | GCATC | 3 cut(s) | 55, 462, 511 |
| BoxI | GACNNNNGTC | 1 cut(s) | 156 |
| BpuMI | CCSGG | 1 cut(s) | 38 |
| BsaJI | CCNNGG | 2 cut(s) | 37, 96 |
| BseDI | CCNNGG | 2 cut(s) | 37, 96 |
| BseGI | GGATG | 2 cut(s) | 362, 502 |
| BseSI | GKGCMC | 1 cut(s) | 322 |
| BseXI | GCAGC | 2 cut(s) | 88, 451 |
| Bsh1236I | CGCG | 1 cut(s) | 180 |
| BsiHKCI | CYCGRG | 1 cut(s) | 217 |
| BsiSI | CCGG | 1 cut(s) | 37 |
| BslFI | GGGAC | 2 cut(s) | 54, 392 |
| BsmFI | GGGAC | 2 cut(s) | 54, 392 |
| BsmI | GAATGC | 1 cut(s) | 193 |
| BsoBI | CYCGRG | 1 cut(s) | 217 |
| Bsp1286I | GDGCHC | 2 cut(s) | 62, 322 |
| Bsp143I | GATC | 2 cut(s) | 127, 229 |
| BspACI | CCGC | 4 cut(s) | 68, 78, 154, 442 |
| BspFNI | CGCG | 1 cut(s) | 180 |
| BspLI | GGNNCC | 2 cut(s) | 380, 381 |
| BssECI | CCNNGG | 2 cut(s) | 37, 96 |
| BssMI | GATC | 2 cut(s) | 127, 229 |
| BssNAI | GTATAC | 1 cut(s) | 117 |
| Bst1107I | GTATAC | 1 cut(s) | 117 |
| Bst4CI | ACNGT | 4 cut(s) | 97, 312, 426, 504 |
| Bst6I | CTCTTC | 1 cut(s) | 281 |
| BstC8I | GCNNGC | 1 cut(s) | 477 |
| BstDSI | CCRYGG | 1 cut(s) | 96 |
| BstF5I | GGATG | 2 cut(s) | 362, 502 |
| BstFNI | CGCG | 1 cut(s) | 180 |
| BstHHI | GCGC | 2 cut(s) | 111, 180 |
| BstKTI | GATC | 2 cut(s) | 130, 232 |
| BstMBI | GATC | 2 cut(s) | 127, 229 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 57, 485 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 156 |
| BstSCI | CCNGG | 1 cut(s) | 36 |
| BstSLI | GKGCMC | 1 cut(s) | 322 |
| BstUI | CGCG | 1 cut(s) | 180 |
| BstV1I | GCAGC | 2 cut(s) | 88, 451 |
| BstZ17I | GTATAC | 1 cut(s) | 117 |
| BtgI | CCRYGG | 1 cut(s) | 96 |
| BtsCI | GGATG | 2 cut(s) | 362, 502 |
| Cac8I | GCNNGC | 1 cut(s) | 477 |
| CfoI | GCGC | 2 cut(s) | 111, 180 |
| Cfr13I | GGNCC | 1 cut(s) | 379 |
| CviAII | CATG | 2 cut(s) | 120, 435 |
| CviJI | RGCY | 9 cut(s) | 8, 60, 101, 341, 368, 431, 479, 493, 512 |
| CviKI_1 | RGCY | 9 cut(s) | 8, 60, 101, 341, 368, 431, 479, 493, 512 |
| DpnI | GATC | 2 cut(s) | 129, 231 |
| DpnII | GATC | 2 cut(s) | 127, 229 |
| Eam1104I | CTCTTC | 1 cut(s) | 281 |
| EarI | CTCTTC | 1 cut(s) | 281 |
| Eco24I | GRGCYC | 1 cut(s) | 62 |
| Eco47I | GGWCC | 1 cut(s) | 379 |
| Eco57I | CTGAAG | 1 cut(s) | 393 |
| Eco88I | CYCGRG | 1 cut(s) | 217 |
| EcoO109I | RGGNCCY | 1 cut(s) | 379 |
| EcoT38I | GRGCYC | 1 cut(s) | 62 |
| FaeI | CATG | 2 cut(s) | 123, 438 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 38, 70 |
| FaqI | GGGAC | 2 cut(s) | 54, 392 |
| FatI | CATG | 2 cut(s) | 119, 434 |
| FbaI | TGATCA | 2 cut(s) | 127, 229 |
| FblI | GTMKAC | 1 cut(s) | 116 |
| Fnu4HI | GCNGC | 4 cut(s) | 69, 79, 102, 440 |
| FokI | GGATG | 2 cut(s) | 369, 509 |
| FriOI | GRGCYC | 1 cut(s) | 62 |
| Fsp4HI | GCNGC | 4 cut(s) | 69, 79, 102, 440 |
| GlaI | GCGC | 2 cut(s) | 110, 179 |
| GluI | GCNGC | 4 cut(s) | 69, 79, 102, 440 |
| HapII | CCGG | 1 cut(s) | 37 |
| HhaI | GCGC | 2 cut(s) | 111, 180 |
| Hin1II | CATG | 2 cut(s) | 123, 438 |
| Hin6I | GCGC | 2 cut(s) | 109, 178 |
| HinP1I | GCGC | 2 cut(s) | 109, 178 |
| HinfI | GANTC | 1 cut(s) | 263 |
| HpaII | CCGG | 1 cut(s) | 37 |
| HphI | GGTGA | 1 cut(s) | 206 |
| Hpy166II | GTNNAC | 2 cut(s) | 117, 239 |
| Hpy188I | TCNGA | 6 cut(s) | 64, 127, 135, 229, 285, 351 |
| Hpy188III | TCNNGA | 1 cut(s) | 244 |
| Hpy8I | GTNNAC | 2 cut(s) | 117, 239 |
| HpyAV | CCTTC | 4 cut(s) | 40, 133, 221, 368 |
| HpyCH4III | ACNGT | 4 cut(s) | 97, 312, 426, 504 |
| HpyCH4V | TGCA | 2 cut(s) | 269, 388 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 57, 485 |
| Hsp92II | CATG | 2 cut(s) | 123, 438 |
| HspAI | GCGC | 2 cut(s) | 109, 178 |
| KflI | GGGWCCC | 1 cut(s) | 379 |
| Ksp22I | TGATCA | 2 cut(s) | 127, 229 |
| Kzo9I | GATC | 2 cut(s) | 127, 229 |
| LpnPI | CCDG | 5 cut(s) | 50, 175, 347, 402, 479 |
| Lsp1109I | GCAGC | 2 cut(s) | 88, 451 |
| LweI | GCATC | 3 cut(s) | 55, 462, 511 |
| MaeIII | GTNAC | 1 cut(s) | 504 |
| MalI | GATC | 2 cut(s) | 129, 231 |
| MboI | GATC | 2 cut(s) | 127, 229 |
| MboII | GAAGA | 1 cut(s) | 298 |
| MhlI | GDGCHC | 2 cut(s) | 62, 322 |
| MluCI | AATT | 1 cut(s) | 405 |
| MlyI | GAGTC | 1 cut(s) | 257 |
| MmeI | TCCRAC | 1 cut(s) | 263 |
| MnlI | CCTC | 4 cut(s) | 235, 282, 331, 483 |
| MseI | TTAA | 1 cut(s) | 408 |
| MspA1I | CMGCKG | 1 cut(s) | 442 |
| MspI | CCGG | 1 cut(s) | 37 |
| MspR9I | CCNGG | 1 cut(s) | 38 |
| Mva1269I | GAATGC | 1 cut(s) | 193 |
| MvnI | CGCG | 1 cut(s) | 180 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 57, 485 |
| NciI | CCSGG | 1 cut(s) | 38 |
| NdeII | GATC | 2 cut(s) | 127, 229 |
| NlaIII | CATG | 2 cut(s) | 123, 438 |
| NlaIV | GGNNCC | 2 cut(s) | 380, 381 |
| PctI | GAATGC | 1 cut(s) | 193 |
| PkrI | GCNGC | 4 cut(s) | 70, 80, 103, 441 |
| PleI | GAGTC | 1 cut(s) | 257 |
| PpsI | GAGTC | 1 cut(s) | 257 |
| PpuMI | RGGWCCY | 1 cut(s) | 379 |
| PshAI | GACNNNNGTC | 1 cut(s) | 156 |
| Psp5II | RGGWCCY | 1 cut(s) | 379 |
| PspN4I | GGNNCC | 2 cut(s) | 380, 381 |
| PspPI | GGNCC | 1 cut(s) | 379 |
| PspPPI | RGGWCCY | 1 cut(s) | 379 |
| SaqAI | TTAA | 1 cut(s) | 408 |
| SatI | GCNGC | 4 cut(s) | 69, 79, 102, 440 |
| Sau3AI | GATC | 2 cut(s) | 127, 229 |
| Sau96I | GGNCC | 1 cut(s) | 379 |
| SchI | GAGTC | 1 cut(s) | 257 |
| ScrFI | CCNGG | 1 cut(s) | 38 |
| SduI | GDGCHC | 2 cut(s) | 62, 322 |
| SetI | ASST | 3 cut(s) | 213, 396, 481 |
| SfaNI | GCATC | 3 cut(s) | 55, 462, 511 |
| SinI | GGWCC | 1 cut(s) | 379 |
| Sse9I | AATT | 1 cut(s) | 405 |
| SsiI | CCGC | 4 cut(s) | 68, 78, 154, 442 |
| StyD4I | CCNGG | 1 cut(s) | 36 |
| TaaI | ACNGT | 4 cut(s) | 97, 312, 426, 504 |
| TaqI | TCGA | 2 cut(s) | 301, 460 |
| TasI | AATT | 1 cut(s) | 405 |
| TauI | GCSGC | 2 cut(s) | 71, 81 |
| Tru1I | TTAA | 1 cut(s) | 408 |
| Tru9I | TTAA | 1 cut(s) | 408 |
| TseI | GCWGC | 2 cut(s) | 101, 439 |
| TspDTI | ATGAA | 1 cut(s) | 513 |
| TspGWI | ACGGA | 1 cut(s) | 482 |
| VpaK11BI | GGWCC | 1 cut(s) | 379 |
| XmiI | GTMKAC | 1 cut(s) | 116 |