ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 338 |
| AccI | GTMKAC | 1 cut(s) | 414 |
| AclI | AACGTT | 1 cut(s) | 568 |
| AclWI | GGATC | 3 cut(s) | 82, 338, 351 |
| AcsI | RAATTY | 1 cut(s) | 478 |
| AfaI | GTAC | 1 cut(s) | 301 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 338 |
| AgsI | TTSAA | 5 cut(s) | 314, 373, 449, 529, 581 |
| AjnI | CCWGG | 1 cut(s) | 572 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 553, 585 |
| AluBI | AGCT | 1 cut(s) | 512 |
| AluI | AGCT | 1 cut(s) | 512 |
| Alw21I | GWGCWC | 1 cut(s) | 514 |
| Alw26I | GTCTC | 3 cut(s) | 106, 141, 418 |
| AlwI | GGATC | 3 cut(s) | 82, 338, 351 |
| Ama87I | CYCGRG | 1 cut(s) | 165 |
| AoxI | GGCC | 1 cut(s) | 123 |
| ApoI | RAATTY | 1 cut(s) | 478 |
| AspS9I | GGNCC | 1 cut(s) | 123 |
| AsuHPI | GGTGA | 2 cut(s) | 166, 232 |
| AvaI | CYCGRG | 1 cut(s) | 165 |
| AxyI | CCTNAGG | 1 cut(s) | 255 |
| BamHI | GGATCC | 1 cut(s) | 343 |
| BanII | GRGCYC | 1 cut(s) | 514 |
| Bbv12I | GWGCWC | 1 cut(s) | 514 |
| BciT130I | CCWGG | 1 cut(s) | 574 |
| BclI | TGATCA | 1 cut(s) | 196 |
| BcoDI | GTCTC | 3 cut(s) | 106, 141, 418 |
| Bme1390I | CCNGG | 1 cut(s) | 574 |
| BmeT110I | CYCGRG | 1 cut(s) | 165 |
| BmgT120I | GGNCC | 1 cut(s) | 123 |
| BmiI | GGNNCC | 1 cut(s) | 345 |
| BmrFI | CCNGG | 1 cut(s) | 574 |
| BmsI | GCATC | 1 cut(s) | 315 |
| BpmI | CTGGAG | 1 cut(s) | 429 |
| Bsa29I | ATCGAT | 1 cut(s) | 57 |
| BsaAI | YACGTR | 1 cut(s) | 87 |
| BsaI | GGTCTC | 1 cut(s) | 141 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 266, 296 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 338 |
| Bse21I | CCTNAGG | 1 cut(s) | 255 |
| Bse3DI | GCAATG | 1 cut(s) | 146 |
| BseBI | CCWGG | 1 cut(s) | 574 |
| BseCI | ATCGAT | 1 cut(s) | 57 |
| BseGI | GGATG | 1 cut(s) | 330 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 338 |
| BseMI | GCAATG | 1 cut(s) | 146 |
| BseMII | CTCAG | 1 cut(s) | 199 |
| BseRI | GAGGAG | 1 cut(s) | 287 |
| BshFI | GGCC | 1 cut(s) | 125 |
| BshVI | ATCGAT | 1 cut(s) | 57 |
| BsiHKAI | GWGCWC | 1 cut(s) | 514 |
| BsiHKCI | CYCGRG | 1 cut(s) | 165 |
| BslFI | GGGAC | 1 cut(s) | 396 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 338 |
| BsmAI | GTCTC | 3 cut(s) | 106, 141, 418 |
| BsmFI | GGGAC | 1 cut(s) | 396 |
| BsmI | GAATGC | 1 cut(s) | 403 |
| BsnI | GGCC | 1 cut(s) | 125 |
| Bso31I | GGTCTC | 1 cut(s) | 141 |
| BsoBI | CYCGRG | 1 cut(s) | 165 |
| Bsp1286I | GDGCHC | 1 cut(s) | 514 |
| Bsp143I | GATC | 6 cut(s) | 54, 74, 118, 196, 213, 343 |
| BspANI | GGCC | 1 cut(s) | 125 |
| BspCNI | CTCAG | 1 cut(s) | 198 |
| BspDI | ATCGAT | 1 cut(s) | 57 |
| BspLI | GGNNCC | 1 cut(s) | 345 |
| BspPI | GGATC | 3 cut(s) | 82, 338, 351 |
| BspTNI | GGTCTC | 1 cut(s) | 141 |
| BsrDI | GCAATG | 1 cut(s) | 146 |
| BssMI | GATC | 6 cut(s) | 54, 74, 118, 196, 213, 343 |
| Bst2UI | CCWGG | 1 cut(s) | 574 |
| Bst4CI | ACNGT | 1 cut(s) | 136 |
| BstBAI | YACGTR | 1 cut(s) | 87 |
| BstC8I | GCNNGC | 1 cut(s) | 127 |
| BstDEI | CTNAG | 3 cut(s) | 105, 185, 255 |
| BstF5I | GGATG | 1 cut(s) | 330 |
| BstKTI | GATC | 6 cut(s) | 57, 77, 121, 199, 216, 346 |
| BstMAI | GTCTC | 3 cut(s) | 106, 141, 418 |
| BstMBI | GATC | 6 cut(s) | 54, 74, 118, 196, 213, 343 |
| BstNI | CCWGG | 1 cut(s) | 574 |
| BstSCI | CCNGG | 1 cut(s) | 572 |
| BstX2I | RGATCY | 1 cut(s) | 343 |
| BstYI | RGATCY | 1 cut(s) | 343 |
| Bsu15I | ATCGAT | 1 cut(s) | 57 |
| Bsu36I | CCTNAGG | 1 cut(s) | 255 |
| BsuRI | GGCC | 1 cut(s) | 125 |
| BsuTUI | ATCGAT | 1 cut(s) | 57 |
| BtsCI | GGATG | 1 cut(s) | 330 |
| BtsI | GCAGTG | 2 cut(s) | 35, 199 |
| BtsIMutI | CAGTG | 3 cut(s) | 35, 141, 199 |
| Cac8I | GCNNGC | 1 cut(s) | 127 |
| Cfr13I | GGNCC | 1 cut(s) | 123 |
| ClaI | ATCGAT | 1 cut(s) | 57 |
| Csp6I | GTAC | 1 cut(s) | 300 |
| CviAII | CATG | 1 cut(s) | 290 |
| CviJI | RGCY | 5 cut(s) | 125, 236, 260, 287, 512 |
| CviKI_1 | RGCY | 5 cut(s) | 125, 236, 260, 287, 512 |
| CviQI | GTAC | 1 cut(s) | 300 |
| DdeI | CTNAG | 3 cut(s) | 105, 185, 255 |
| DpnI | GATC | 6 cut(s) | 56, 76, 120, 198, 215, 345 |
| DpnII | GATC | 6 cut(s) | 54, 74, 118, 196, 213, 343 |
| Ecl136II | GAGCTC | 1 cut(s) | 512 |
| Eco24I | GRGCYC | 1 cut(s) | 514 |
| Eco31I | GGTCTC | 1 cut(s) | 141 |
| Eco53kI | GAGCTC | 1 cut(s) | 512 |
| Eco81I | CCTNAGG | 1 cut(s) | 255 |
| Eco88I | CYCGRG | 1 cut(s) | 165 |
| EcoICRI | GAGCTC | 1 cut(s) | 512 |
| EcoRII | CCWGG | 1 cut(s) | 572 |
| EcoT38I | GRGCYC | 1 cut(s) | 514 |
| FaeI | CATG | 1 cut(s) | 293 |
| FaiI | YATR | 3 cut(s) | 62, 291, 350 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 24, 56 |
| FaqI | GGGAC | 1 cut(s) | 396 |
| FatI | CATG | 1 cut(s) | 289 |
| FbaI | TGATCA | 1 cut(s) | 196 |
| FblI | GTMKAC | 1 cut(s) | 414 |
| FokI | GGATG | 1 cut(s) | 337 |
| FriOI | GRGCYC | 1 cut(s) | 514 |
| GsuI | CTGGAG | 1 cut(s) | 429 |
| HaeIII | GGCC | 1 cut(s) | 125 |
| Hin1II | CATG | 1 cut(s) | 293 |
| HinfI | GANTC | 5 cut(s) | 223, 411, 445, 485, 577 |
| HphI | GGTGA | 2 cut(s) | 166, 232 |
| Hpy166II | GTNNAC | 1 cut(s) | 415 |
| Hpy188I | TCNGA | 1 cut(s) | 196 |
| Hpy188III | TCNNGA | 5 cut(s) | 165, 211, 227, 394, 408 |
| Hpy8I | GTNNAC | 1 cut(s) | 415 |
| HpyCH4III | ACNGT | 1 cut(s) | 136 |
| HpyCH4IV | ACGT | 2 cut(s) | 86, 568 |
| HpyCH4V | TGCA | 2 cut(s) | 139, 293 |
| HpyF3I | CTNAG | 3 cut(s) | 105, 185, 255 |
| HpySE526I | ACGT | 2 cut(s) | 86, 568 |
| Hsp92II | CATG | 1 cut(s) | 293 |
| Ksp22I | TGATCA | 1 cut(s) | 196 |
| Kzo9I | GATC | 6 cut(s) | 54, 74, 118, 196, 213, 343 |
| LmnI | GCTCC | 1 cut(s) | 333 |
| LweI | GCATC | 1 cut(s) | 315 |
| MaeII | ACGT | 2 cut(s) | 86, 568 |
| MalI | GATC | 6 cut(s) | 56, 76, 120, 198, 215, 345 |
| MboI | GATC | 6 cut(s) | 54, 74, 118, 196, 213, 343 |
| MboII | GAAGA | 1 cut(s) | 487 |
| MflI | RGATCY | 1 cut(s) | 343 |
| MhlI | GDGCHC | 1 cut(s) | 514 |
| MluCI | AATT | 4 cut(s) | 94, 478, 518, 533 |
| MlyI | GAGTC | 2 cut(s) | 420, 494 |
| MmeI | TCCRAC | 2 cut(s) | 52, 302 |
| MnlI | CCTC | 6 cut(s) | 161, 188, 192, 211, 265, 465 |
| MseI | TTAA | 1 cut(s) | 587 |
| MspR9I | CCNGG | 1 cut(s) | 574 |
| Mva1269I | GAATGC | 1 cut(s) | 403 |
| MvaI | CCWGG | 1 cut(s) | 574 |
| NdeII | GATC | 6 cut(s) | 54, 74, 118, 196, 213, 343 |
| NlaIII | CATG | 1 cut(s) | 293 |
| NlaIV | GGNNCC | 1 cut(s) | 345 |
| PctI | GAATGC | 1 cut(s) | 403 |
| PfeI | GAWTC | 3 cut(s) | 223, 445, 577 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 338 |
| PfoI | TCCNGGA | 1 cut(s) | 572 |
| PleI | GAGTC | 2 cut(s) | 419, 493 |
| PpsI | GAGTC | 2 cut(s) | 419, 493 |
| Ppu21I | YACGTR | 1 cut(s) | 87 |
| Psp124BI | GAGCTC | 1 cut(s) | 514 |
| Psp1406I | AACGTT | 1 cut(s) | 568 |
| Psp6I | CCWGG | 1 cut(s) | 572 |
| PspGI | CCWGG | 1 cut(s) | 572 |
| PspN4I | GGNNCC | 1 cut(s) | 345 |
| PspPI | GGNCC | 1 cut(s) | 123 |
| PsuI | RGATCY | 1 cut(s) | 343 |
| RsaI | GTAC | 1 cut(s) | 301 |
| RsaNI | GTAC | 1 cut(s) | 300 |
| SacI | GAGCTC | 1 cut(s) | 514 |
| SaqAI | TTAA | 1 cut(s) | 587 |
| Sau3AI | GATC | 6 cut(s) | 54, 74, 118, 196, 213, 343 |
| Sau96I | GGNCC | 1 cut(s) | 123 |
| SchI | GAGTC | 2 cut(s) | 420, 494 |
| ScrFI | CCNGG | 1 cut(s) | 574 |
| SduI | GDGCHC | 1 cut(s) | 514 |
| SetI | ASST | 6 cut(s) | 89, 153, 222, 514, 527, 571 |
| SfaNI | GCATC | 1 cut(s) | 315 |
| Sse9I | AATT | 4 cut(s) | 94, 478, 518, 533 |
| SspI | AATATT | 1 cut(s) | 18 |
| SstI | GAGCTC | 1 cut(s) | 514 |
| StyD4I | CCNGG | 1 cut(s) | 572 |
| TaaI | ACNGT | 1 cut(s) | 136 |
| TaiI | ACGT | 2 cut(s) | 89, 571 |
| TaqI | TCGA | 3 cut(s) | 57, 216, 242 |
| TasI | AATT | 4 cut(s) | 94, 478, 518, 533 |
| TfiI | GAWTC | 3 cut(s) | 223, 445, 577 |
| Tru1I | TTAA | 1 cut(s) | 587 |
| Tru9I | TTAA | 1 cut(s) | 587 |
| TscAI | CASTG | 3 cut(s) | 42, 141, 206 |
| TspDTI | ATGAA | 1 cut(s) | 546 |
| TspRI | CASTG | 3 cut(s) | 42, 141, 206 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 338 |
| XapI | RAATTY | 1 cut(s) | 478 |
| XmiI | GTMKAC | 1 cut(s) | 414 |