Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Cation_ATPase_N | PF00690 | 109 - 178 | 1.1e-14 | Cation transporter/ATPase, N-terminus |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 409 |
| AciI | CCGC | 2 cut(s) | 449, 602 |
| AclWI | GGATC | 1 cut(s) | 235 |
| AcsI | RAATTY | 1 cut(s) | 422 |
| AcuI | CTGAAG | 1 cut(s) | 417 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 458 |
| AgsI | TTSAA | 3 cut(s) | 262, 338, 490 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 173, 205 |
| AluBI | AGCT | 4 cut(s) | 289, 316, 325, 353 |
| AluI | AGCT | 4 cut(s) | 289, 316, 325, 353 |
| Alw21I | GWGCWC | 1 cut(s) | 318 |
| Alw26I | GTCTC | 1 cut(s) | 86 |
| AlwI | GGATC | 1 cut(s) | 235 |
| ApeKI | GCWGC | 1 cut(s) | 524 |
| ApoI | RAATTY | 1 cut(s) | 422 |
| AseI | ATTAAT | 1 cut(s) | 252 |
| AspLEI | GCGC | 2 cut(s) | 409, 411 |
| AsuHPI | GGTGA | 1 cut(s) | 398 |
| BaeGI | GKGCMC | 1 cut(s) | 25 |
| BanII | GRGCYC | 1 cut(s) | 318 |
| BbsI | GAAGAC | 1 cut(s) | 405 |
| Bbv12I | GWGCWC | 1 cut(s) | 318 |
| BbvI | GCAGC | 1 cut(s) | 511 |
| BccI | CCATC | 2 cut(s) | 131, 575 |
| BcoDI | GTCTC | 1 cut(s) | 86 |
| BfaI | CTAG | 1 cut(s) | 135 |
| BfmI | CTRYAG | 1 cut(s) | 640 |
| BisI | GCNGC | 1 cut(s) | 525 |
| BlsI | GCNGC | 1 cut(s) | 526 |
| BmiI | GGNNCC | 1 cut(s) | 430 |
| BmsI | GCATC | 2 cut(s) | 355, 356 |
| BpiI | GAAGAC | 1 cut(s) | 405 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 129, 161 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 458 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 458 |
| BseMII | CTCAG | 1 cut(s) | 276 |
| BsePI | GCGCGC | 1 cut(s) | 407 |
| BseSI | GKGCMC | 1 cut(s) | 25 |
| BseXI | GCAGC | 1 cut(s) | 511 |
| BseYI | CCCAGC | 1 cut(s) | 244 |
| BsgI | GTGCAG | 1 cut(s) | 510 |
| Bsh1236I | CGCG | 1 cut(s) | 409 |
| BsiHKAI | GWGCWC | 1 cut(s) | 318 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 458 |
| BsmAI | GTCTC | 1 cut(s) | 86 |
| BsmI | GAATGC | 1 cut(s) | 106 |
| Bsp1286I | GDGCHC | 2 cut(s) | 25, 318 |
| Bsp143I | GATC | 1 cut(s) | 240 |
| BspACI | CCGC | 2 cut(s) | 449, 602 |
| BspCNI | CTCAG | 1 cut(s) | 277 |
| BspFNI | CGCG | 1 cut(s) | 409 |
| BspLI | GGNNCC | 1 cut(s) | 430 |
| BspPI | GGATC | 1 cut(s) | 235 |
| BssHII | GCGCGC | 1 cut(s) | 407 |
| BssMI | GATC | 1 cut(s) | 240 |
| BstC8I | GCNNGC | 2 cut(s) | 234, 409 |
| BstDEI | CTNAG | 1 cut(s) | 285 |
| BstFNI | CGCG | 1 cut(s) | 409 |
| BstHHI | GCGC | 2 cut(s) | 409, 411 |
| BstKTI | GATC | 1 cut(s) | 243 |
| BstMAI | GTCTC | 1 cut(s) | 86 |
| BstMBI | GATC | 1 cut(s) | 240 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 322 |
| BstSFI | CTRYAG | 1 cut(s) | 640 |
| BstSLI | GKGCMC | 1 cut(s) | 25 |
| BstUI | CGCG | 1 cut(s) | 409 |
| BstV1I | GCAGC | 1 cut(s) | 511 |
| BstV2I | GAAGAC | 1 cut(s) | 405 |
| BtsI | GCAGTG | 1 cut(s) | 402 |
| BtsIMutI | CAGTG | 3 cut(s) | 25, 282, 402 |
| Cac8I | GCNNGC | 2 cut(s) | 234, 409 |
| CfoI | GCGC | 2 cut(s) | 409, 411 |
| CviAII | CATG | 4 cut(s) | 29, 88, 374, 557 |
| DdeI | CTNAG | 1 cut(s) | 285 |
| DpnI | GATC | 1 cut(s) | 242 |
| DpnII | GATC | 1 cut(s) | 240 |
| Ecl136II | GAGCTC | 1 cut(s) | 316 |
| Eco24I | GRGCYC | 1 cut(s) | 318 |
| Eco53kI | GAGCTC | 1 cut(s) | 316 |
| Eco57I | CTGAAG | 1 cut(s) | 417 |
| EcoICRI | GAGCTC | 1 cut(s) | 316 |
| EcoT38I | GRGCYC | 1 cut(s) | 318 |
| FaeI | CATG | 4 cut(s) | 32, 91, 377, 560 |
| FaiI | YATR | 7 cut(s) | 30, 89, 177, 194, 375, 439, 558 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 450, 482 |
| FatI | CATG | 4 cut(s) | 28, 87, 373, 556 |
| Fnu4HI | GCNGC | 1 cut(s) | 525 |
| FriOI | GRGCYC | 1 cut(s) | 318 |
| Fsp4HI | GCNGC | 1 cut(s) | 525 |
| FspBI | CTAG | 1 cut(s) | 135 |
| GlaI | GCGC | 2 cut(s) | 408, 410 |
| GluI | GCNGC | 1 cut(s) | 525 |
| GsaI | CCCAGC | 1 cut(s) | 248 |
| HhaI | GCGC | 2 cut(s) | 409, 411 |
| Hin1II | CATG | 4 cut(s) | 32, 91, 377, 560 |
| Hin6I | GCGC | 2 cut(s) | 407, 409 |
| HinP1I | GCGC | 2 cut(s) | 407, 409 |
| HincII | GTYRAC | 1 cut(s) | 12 |
| HindII | GTYRAC | 1 cut(s) | 12 |
| HinfI | GANTC | 5 cut(s) | 58, 225, 258, 378, 462 |
| HphI | GGTGA | 1 cut(s) | 398 |
| Hpy166II | GTNNAC | 1 cut(s) | 12 |
| Hpy188I | TCNGA | 1 cut(s) | 72 |
| Hpy188III | TCNNGA | 3 cut(s) | 62, 135, 419 |
| Hpy8I | GTNNAC | 1 cut(s) | 12 |
| HpyAV | CCTTC | 7 cut(s) | 25, 151, 168, 289, 476, 496, 563 |
| HpyCH4V | TGCA | 3 cut(s) | 28, 368, 527 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 322 |
| HpyF3I | CTNAG | 1 cut(s) | 285 |
| Hsp92II | CATG | 4 cut(s) | 32, 91, 377, 560 |
| HspAI | GCGC | 2 cut(s) | 407, 409 |
| Kzo9I | GATC | 1 cut(s) | 240 |
| LmnI | GCTCC | 1 cut(s) | 322 |
| LpnPI | CCDG | 4 cut(s) | 38, 246, 258, 596 |
| Lsp1109I | GCAGC | 1 cut(s) | 511 |
| LweI | GCATC | 2 cut(s) | 355, 356 |
| MaeI | CTAG | 1 cut(s) | 135 |
| MaeIII | GTNAC | 1 cut(s) | 635 |
| MalI | GATC | 1 cut(s) | 242 |
| MboI | GATC | 1 cut(s) | 240 |
| MboII | GAAGA | 2 cut(s) | 350, 410 |
| MhlI | GDGCHC | 2 cut(s) | 25, 318 |
| MluCI | AATT | 4 cut(s) | 360, 422, 501, 660 |
| MlyI | GAGTC | 1 cut(s) | 234 |
| MmeI | TCCRAC | 2 cut(s) | 456, 554 |
| MnlI | CCTC | 3 cut(s) | 155, 290, 323 |
| MseI | TTAA | 2 cut(s) | 252, 563 |
| MslI | CAYNNNNRTG | 1 cut(s) | 33 |
| Mva1269I | GAATGC | 1 cut(s) | 106 |
| MvnI | CGCG | 1 cut(s) | 409 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 322 |
| NdeII | GATC | 1 cut(s) | 240 |
| NlaIII | CATG | 4 cut(s) | 32, 91, 377, 560 |
| NlaIV | GGNNCC | 1 cut(s) | 430 |
| NmeAIII | GCCGAG | 1 cut(s) | 63 |
| PauI | GCGCGC | 1 cut(s) | 407 |
| PctI | GAATGC | 1 cut(s) | 106 |
| PfeI | GAWTC | 4 cut(s) | 58, 258, 378, 462 |
| PkrI | GCNGC | 1 cut(s) | 526 |
| PleI | GAGTC | 1 cut(s) | 233 |
| PpsI | GAGTC | 1 cut(s) | 233 |
| PshBI | ATTAAT | 1 cut(s) | 252 |
| Psp124BI | GAGCTC | 1 cut(s) | 318 |
| PspFI | CCCAGC | 1 cut(s) | 244 |
| PspN4I | GGNNCC | 1 cut(s) | 430 |
| PteI | GCGCGC | 1 cut(s) | 407 |
| RseI | CAYNNNNRTG | 1 cut(s) | 33 |
| SacI | GAGCTC | 1 cut(s) | 318 |
| SaqAI | TTAA | 2 cut(s) | 252, 563 |
| SatI | GCNGC | 1 cut(s) | 525 |
| Sau3AI | GATC | 1 cut(s) | 240 |
| SchI | GAGTC | 1 cut(s) | 234 |
| SduI | GDGCHC | 2 cut(s) | 25, 318 |
| SetI | ASST | 8 cut(s) | 11, 17, 160, 291, 318, 327, 355, 574 |
| SfaNI | GCATC | 2 cut(s) | 355, 356 |
| SfcI | CTRYAG | 1 cut(s) | 640 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 33 |
| Sse9I | AATT | 4 cut(s) | 360, 422, 501, 660 |
| SsiI | CCGC | 2 cut(s) | 449, 602 |
| SspI | AATATT | 1 cut(s) | 49 |
| SspMI | CTAG | 1 cut(s) | 135 |
| SstI | GAGCTC | 1 cut(s) | 318 |
| TaqI | TCGA | 1 cut(s) | 228 |
| TasI | AATT | 4 cut(s) | 360, 422, 501, 660 |
| TfiI | GAWTC | 4 cut(s) | 58, 258, 378, 462 |
| Tru1I | TTAA | 2 cut(s) | 252, 563 |
| Tru9I | TTAA | 2 cut(s) | 252, 563 |
| TscAI | CASTG | 3 cut(s) | 25, 289, 409 |
| TseI | GCWGC | 1 cut(s) | 524 |
| TspDTI | ATGAA | 4 cut(s) | 45, 106, 181, 458 |
| TspRI | CASTG | 3 cut(s) | 25, 289, 409 |
| VspI | ATTAAT | 1 cut(s) | 252 |
| XapI | RAATTY | 1 cut(s) | 422 |
| XbaI | TCTAGA | 1 cut(s) | 134 |
| XspI | CTAG | 1 cut(s) | 135 |