ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-RVT | PF13966 | 403 - 477 | 3.9e-15 | zinc-binding in reverse transcriptase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 627, 885 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 37 |
| AccII | CGCG | 2 cut(s) | 646, 904 |
| AclI | AACGTT | 1 cut(s) | 528 |
| AcsI | RAATTY | 7 cut(s) | 108, 152, 690, 948, 1018, 1500, 1536 |
| AfaI | GTAC | 1 cut(s) | 333 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 37, 1010, 1554 |
| AluBI | AGCT | 6 cut(s) | 91, 293, 373, 452, 1435, 1521 |
| AluI | AGCT | 6 cut(s) | 91, 293, 373, 452, 1435, 1521 |
| Alw21I | GWGCWC | 3 cut(s) | 375, 724, 982 |
| Alw26I | GTCTC | 5 cut(s) | 511, 785, 817, 1080, 1112 |
| ApeKI | GCWGC | 2 cut(s) | 290, 452 |
| ApoI | RAATTY | 7 cut(s) | 108, 152, 690, 948, 1018, 1500, 1536 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 843, 1138, 1277 |
| AspLEI | GCGC | 2 cut(s) | 648, 906 |
| AsuHPI | GGTGA | 2 cut(s) | 107, 616 |
| AsuII | TTCGAA | 2 cut(s) | 827, 1122 |
| BanII | GRGCYC | 1 cut(s) | 375 |
| Bbv12I | GWGCWC | 3 cut(s) | 375, 724, 982 |
| BbvI | GCAGC | 2 cut(s) | 302, 439 |
| BceAI | ACGGC | 2 cut(s) | 649, 907 |
| BcoDI | GTCTC | 5 cut(s) | 511, 785, 817, 1080, 1112 |
| BfmI | CTRYAG | 2 cut(s) | 861, 1156 |
| BfuAI | ACCTGC | 2 cut(s) | 627, 885 |
| BisI | GCNGC | 2 cut(s) | 291, 453 |
| BlsI | GCNGC | 2 cut(s) | 292, 454 |
| BmcAI | AGTACT | 1 cut(s) | 333 |
| BmsI | GCATC | 8 cut(s) | 602, 624, 657, 739, 860, 882, 915, 1471 |
| Bpu14I | TTCGAA | 2 cut(s) | 827, 1122 |
| BpuEI | CTTGAG | 1 cut(s) | 40 |
| BsaJI | CCNNGG | 2 cut(s) | 1512, 1548 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 318, 348, 711, 741, 969, 999 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 37, 1010, 1554 |
| Bse3DI | GCAATG | 1 cut(s) | 1480 |
| BseDI | CCNNGG | 2 cut(s) | 1512, 1548 |
| BseGI | GGATG | 3 cut(s) | 617, 875, 1019 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 37, 1010, 1554 |
| BseMI | GCAATG | 1 cut(s) | 1480 |
| BseMII | CTCAG | 2 cut(s) | 828, 1123 |
| BseRI | GAGGAG | 1 cut(s) | 1027 |
| BseXI | GCAGC | 2 cut(s) | 302, 439 |
| Bsh1236I | CGCG | 2 cut(s) | 646, 904 |
| BsiHKAI | GWGCWC | 3 cut(s) | 375, 724, 982 |
| BslFI | GGGAC | 1 cut(s) | 215 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 37, 1010, 1554 |
| BsmAI | GTCTC | 5 cut(s) | 511, 785, 817, 1080, 1112 |
| BsmFI | GGGAC | 1 cut(s) | 215 |
| Bsp119I | TTCGAA | 2 cut(s) | 827, 1122 |
| Bsp1286I | GDGCHC | 3 cut(s) | 375, 724, 982 |
| Bsp19I | CCATGG | 2 cut(s) | 1512, 1548 |
| BspCNI | CTCAG | 2 cut(s) | 827, 1122 |
| BspFNI | CGCG | 2 cut(s) | 646, 904 |
| BspMI | ACCTGC | 2 cut(s) | 627, 885 |
| BspT104I | TTCGAA | 2 cut(s) | 827, 1122 |
| BsrDI | GCAATG | 1 cut(s) | 1480 |
| BssECI | CCNNGG | 2 cut(s) | 1512, 1548 |
| BssT1I | CCWWGG | 2 cut(s) | 1512, 1548 |
| Bst4CI | ACNGT | 3 cut(s) | 206, 270, 1243 |
| Bst6I | CTCTTC | 3 cut(s) | 187, 689, 1182 |
| BstBI | TTCGAA | 2 cut(s) | 827, 1122 |
| BstC8I | GCNNGC | 3 cut(s) | 13, 422, 1290 |
| BstDEI | CTNAG | 2 cut(s) | 814, 1109 |
| BstDSI | CCRYGG | 2 cut(s) | 1512, 1548 |
| BstF5I | GGATG | 3 cut(s) | 617, 875, 1019 |
| BstFNI | CGCG | 2 cut(s) | 646, 904 |
| BstHHI | GCGC | 2 cut(s) | 648, 906 |
| BstMAI | GTCTC | 5 cut(s) | 511, 785, 817, 1080, 1112 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 97, 1394 |
| BstSFI | CTRYAG | 2 cut(s) | 861, 1156 |
| BstUI | CGCG | 2 cut(s) | 646, 904 |
| BstV1I | GCAGC | 2 cut(s) | 302, 439 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1487 |
| BtgI | CCRYGG | 2 cut(s) | 1512, 1548 |
| BtsCI | GGATG | 3 cut(s) | 617, 875, 1019 |
| BtsI | GCAGTG | 2 cut(s) | 1347, 1380 |
| BtsIMutI | CAGTG | 3 cut(s) | 211, 1347, 1380 |
| BveI | ACCTGC | 2 cut(s) | 627, 885 |
| Cac8I | GCNNGC | 3 cut(s) | 13, 422, 1290 |
| CfoI | GCGC | 2 cut(s) | 648, 906 |
| CseI | GACGC | 2 cut(s) | 652, 910 |
| Csp6I | GTAC | 1 cut(s) | 332 |
| CviAII | CATG | 9 cut(s) | 32, 350, 521, 754, 1049, 1311, 1394, 1513, 1549 |
| CviQI | GTAC | 1 cut(s) | 332 |
| DdeI | CTNAG | 2 cut(s) | 814, 1109 |
| DraI | TTTAAA | 1 cut(s) | 1254 |
| Eam1104I | CTCTTC | 3 cut(s) | 187, 689, 1182 |
| EarI | CTCTTC | 3 cut(s) | 187, 689, 1182 |
| Ecl136II | GAGCTC | 1 cut(s) | 373 |
| Eco130I | CCWWGG | 2 cut(s) | 1512, 1548 |
| Eco24I | GRGCYC | 1 cut(s) | 375 |
| Eco32I | GATATC | 2 cut(s) | 768, 1063 |
| Eco53kI | GAGCTC | 1 cut(s) | 373 |
| EcoICRI | GAGCTC | 1 cut(s) | 373 |
| EcoRV | GATATC | 2 cut(s) | 768, 1063 |
| EcoT14I | CCWWGG | 2 cut(s) | 1512, 1548 |
| EcoT22I | ATGCAT | 3 cut(s) | 617, 875, 1361 |
| EcoT38I | GRGCYC | 1 cut(s) | 375 |
| ErhI | CCWWGG | 2 cut(s) | 1512, 1548 |
| FaeI | CATG | 9 cut(s) | 35, 353, 524, 757, 1052, 1314, 1397, 1516, 1552 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1265, 1297 |
| FaqI | GGGAC | 1 cut(s) | 215 |
| FatI | CATG | 9 cut(s) | 31, 349, 520, 753, 1048, 1310, 1393, 1512, 1548 |
| FauNDI | CATATG | 1 cut(s) | 315 |
| Fnu4HI | GCNGC | 2 cut(s) | 291, 453 |
| FokI | GGATG | 3 cut(s) | 624, 882, 1026 |
| FriOI | GRGCYC | 1 cut(s) | 375 |
| Fsp4HI | GCNGC | 2 cut(s) | 291, 453 |
| GlaI | GCGC | 2 cut(s) | 647, 905 |
| GluI | GCNGC | 2 cut(s) | 291, 453 |
| HgaI | GACGC | 2 cut(s) | 652, 910 |
| HhaI | GCGC | 2 cut(s) | 648, 906 |
| Hin1II | CATG | 9 cut(s) | 35, 353, 524, 757, 1052, 1314, 1397, 1516, 1552 |
| Hin6I | GCGC | 2 cut(s) | 646, 904 |
| HinP1I | GCGC | 2 cut(s) | 646, 904 |
| HincII | GTYRAC | 2 cut(s) | 642, 900 |
| HindII | GTYRAC | 2 cut(s) | 642, 900 |
| HindIII | AAGCTT | 1 cut(s) | 1433 |
| HinfI | GANTC | 8 cut(s) | 195, 216, 667, 697, 925, 955, 1190, 1382 |
| HphI | GGTGA | 2 cut(s) | 107, 616 |
| Hpy166II | GTNNAC | 2 cut(s) | 642, 900 |
| Hpy188I | TCNGA | 8 cut(s) | 67, 163, 191, 346, 377, 817, 1112, 1405 |
| Hpy188III | TCNNGA | 8 cut(s) | 57, 105, 593, 713, 971, 1209, 1488, 1524 |
| Hpy8I | GTNNAC | 2 cut(s) | 642, 900 |
| HpyAV | CCTTC | 6 cut(s) | 88, 462, 479, 687, 945, 1400 |
| HpyCH4III | ACNGT | 3 cut(s) | 206, 270, 1243 |
| HpyCH4IV | ACGT | 1 cut(s) | 528 |
| HpyCH4V | TGCA | 7 cut(s) | 242, 420, 542, 615, 873, 1359, 1397 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 97, 1394 |
| HpyF3I | CTNAG | 2 cut(s) | 814, 1109 |
| HpySE526I | ACGT | 1 cut(s) | 528 |
| Hsp92II | CATG | 9 cut(s) | 35, 353, 524, 757, 1052, 1314, 1397, 1516, 1552 |
| HspAI | GCGC | 2 cut(s) | 646, 904 |
| LmnI | GCTCC | 6 cut(s) | 719, 747, 977, 1005, 1319, 1370 |
| Lsp1109I | GCAGC | 2 cut(s) | 302, 439 |
| LweI | GCATC | 8 cut(s) | 602, 624, 657, 739, 860, 882, 915, 1471 |
| MaeII | ACGT | 1 cut(s) | 528 |
| MaeIII | GTNAC | 2 cut(s) | 629, 887 |
| MhlI | GDGCHC | 3 cut(s) | 375, 724, 982 |
| MlyI | GAGTC | 4 cut(s) | 204, 706, 964, 1199 |
| MmeI | TCCRAC | 1 cut(s) | 514 |
| Mph1103I | ATGCAT | 3 cut(s) | 617, 875, 1361 |
| MroXI | GAANNNNTTC | 3 cut(s) | 843, 1138, 1277 |
| MseI | TTAA | 7 cut(s) | 18, 27, 230, 1028, 1176, 1253, 1319 |
| MvnI | CGCG | 2 cut(s) | 646, 904 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 97, 1394 |
| NcoI | CCATGG | 2 cut(s) | 1512, 1548 |
| NdeI | CATATG | 1 cut(s) | 315 |
| NlaIII | CATG | 9 cut(s) | 35, 353, 524, 757, 1052, 1314, 1397, 1516, 1552 |
| NsiI | ATGCAT | 3 cut(s) | 617, 875, 1361 |
| NspV | TTCGAA | 2 cut(s) | 827, 1122 |
| PdmI | GAANNNNTTC | 3 cut(s) | 843, 1138, 1277 |
| PfeI | GAWTC | 4 cut(s) | 216, 667, 925, 1382 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 37 |
| PkrI | GCNGC | 2 cut(s) | 292, 454 |
| PleI | GAGTC | 4 cut(s) | 203, 705, 963, 1198 |
| PpsI | GAGTC | 4 cut(s) | 203, 705, 963, 1198 |
| Psp124BI | GAGCTC | 1 cut(s) | 375 |
| Psp1406I | AACGTT | 1 cut(s) | 528 |
| RsaI | GTAC | 1 cut(s) | 333 |
| RsaNI | GTAC | 1 cut(s) | 332 |
| SacI | GAGCTC | 1 cut(s) | 375 |
| SaqAI | TTAA | 7 cut(s) | 18, 27, 230, 1028, 1176, 1253, 1319 |
| SatI | GCNGC | 2 cut(s) | 291, 453 |
| ScaI | AGTACT | 1 cut(s) | 333 |
| SchI | GAGTC | 4 cut(s) | 204, 706, 964, 1199 |
| SduI | GDGCHC | 3 cut(s) | 375, 724, 982 |
| SfaNI | GCATC | 8 cut(s) | 602, 624, 657, 739, 860, 882, 915, 1471 |
| SfcI | CTRYAG | 2 cut(s) | 861, 1156 |
| SfuI | TTCGAA | 2 cut(s) | 827, 1122 |
| SmlI | CTYRAG | 1 cut(s) | 55 |
| SmoI | CTYRAG | 1 cut(s) | 55 |
| SspI | AATATT | 3 cut(s) | 22, 844, 1139 |
| SstI | GAGCTC | 1 cut(s) | 375 |
| StyI | CCWWGG | 2 cut(s) | 1512, 1548 |
| TaaI | ACNGT | 3 cut(s) | 206, 270, 1243 |
| TaiI | ACGT | 1 cut(s) | 531 |
| TaqI | TCGA | 2 cut(s) | 827, 1122 |
| TatI | WGTACW | 1 cut(s) | 331 |
| TfiI | GAWTC | 4 cut(s) | 216, 667, 925, 1382 |
| Tru1I | TTAA | 7 cut(s) | 18, 27, 230, 1028, 1176, 1253, 1319 |
| Tru9I | TTAA | 7 cut(s) | 18, 27, 230, 1028, 1176, 1253, 1319 |
| TscAI | CASTG | 3 cut(s) | 211, 1354, 1380 |
| TseI | GCWGC | 2 cut(s) | 290, 452 |
| TspDTI | ATGAA | 8 cut(s) | 17, 70, 773, 1068, 1286, 1382, 1508, 1544 |
| TspRI | CASTG | 3 cut(s) | 211, 1354, 1380 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 37 |
| XapI | RAATTY | 7 cut(s) | 108, 152, 690, 948, 1018, 1500, 1536 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 567 |
| XmnI | GAANNNNTTC | 3 cut(s) | 843, 1138, 1277 |
| ZrmI | AGTACT | 1 cut(s) | 333 |
| Zsp2I | ATGCAT | 3 cut(s) | 617, 875, 1361 |