ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 442 |
| AccBSI | CCGCTC | 1 cut(s) | 256 |
| AciI | CCGC | 1 cut(s) | 256 |
| AclWI | GGATC | 2 cut(s) | 180, 210 |
| AcoI | YGGCCR | 1 cut(s) | 623 |
| AcuI | CTGAAG | 1 cut(s) | 572 |
| AfaI | GTAC | 2 cut(s) | 180, 608 |
| AgsI | TTSAA | 2 cut(s) | 269, 280 |
| AjiI | CACGTC | 1 cut(s) | 296 |
| AjnI | CCWGG | 1 cut(s) | 41 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 291, 323 |
| AluBI | AGCT | 5 cut(s) | 117, 208, 341, 482, 578 |
| AluI | AGCT | 5 cut(s) | 117, 208, 341, 482, 578 |
| AlwI | GGATC | 2 cut(s) | 180, 210 |
| Ama87I | CYCGRG | 1 cut(s) | 35 |
| AoxI | GGCC | 4 cut(s) | 38, 135, 448, 623 |
| ApaI | GGGCCC | 2 cut(s) | 42, 452 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 288, 342 |
| AspS9I | GGNCC | 4 cut(s) | 38, 39, 448, 449 |
| AsuC2I | CCSGG | 1 cut(s) | 447 |
| AsuHPI | GGTGA | 3 cut(s) | 83, 143, 253 |
| AvaI | CYCGRG | 1 cut(s) | 35 |
| BaeGI | GKGCMC | 3 cut(s) | 42, 110, 452 |
| BalI | TGGCCA | 1 cut(s) | 625 |
| BanI | GGYRCC | 1 cut(s) | 442 |
| BanII | GRGCYC | 2 cut(s) | 42, 452 |
| BbsI | GAAGAC | 1 cut(s) | 382 |
| BccI | CCATC | 2 cut(s) | 442, 449 |
| BciT130I | CCWGG | 1 cut(s) | 43 |
| BciVI | GTATCC | 1 cut(s) | 441 |
| BcnI | CCSGG | 1 cut(s) | 447 |
| BfaI | CTAG | 2 cut(s) | 92, 335 |
| BfuI | GTATCC | 1 cut(s) | 441 |
| BisI | GCNGC | 1 cut(s) | 257 |
| BlsI | GCNGC | 1 cut(s) | 258 |
| Bme1390I | CCNGG | 2 cut(s) | 43, 447 |
| BmeT110I | CYCGRG | 1 cut(s) | 35 |
| BmgBI | CACGTC | 1 cut(s) | 296 |
| BmgT120I | GGNCC | 4 cut(s) | 38, 39, 448, 449 |
| BmiI | GGNNCC | 4 cut(s) | 40, 444, 450, 661 |
| BmrFI | CCNGG | 2 cut(s) | 43, 447 |
| BmsI | GCATC | 3 cut(s) | 157, 385, 556 |
| BoxI | GACNNNNGTC | 1 cut(s) | 386 |
| BpiI | GAAGAC | 1 cut(s) | 382 |
| BpuMI | CCSGG | 1 cut(s) | 447 |
| BsaAI | YACGTR | 1 cut(s) | 178 |
| BsaJI | CCNNGG | 1 cut(s) | 41 |
| BsaWI | WCCGGW | 1 cut(s) | 678 |
| Bse3DI | GCAATG | 2 cut(s) | 432, 646 |
| BseBI | CCWGG | 1 cut(s) | 43 |
| BseDI | CCNNGG | 1 cut(s) | 41 |
| BseGI | GGATG | 1 cut(s) | 687 |
| BseMI | GCAATG | 2 cut(s) | 432, 646 |
| BseMII | CTCAG | 1 cut(s) | 617 |
| BseRI | GAGGAG | 1 cut(s) | 557 |
| BseSI | GKGCMC | 3 cut(s) | 42, 110, 452 |
| BshFI | GGCC | 4 cut(s) | 40, 137, 450, 625 |
| BshNI | GGYRCC | 1 cut(s) | 442 |
| BsiHKCI | CYCGRG | 1 cut(s) | 35 |
| BsiSI | CCGG | 4 cut(s) | 88, 134, 446, 679 |
| BsnI | GGCC | 4 cut(s) | 40, 137, 450, 625 |
| BsoBI | CYCGRG | 1 cut(s) | 35 |
| Bsp120I | GGGCCC | 2 cut(s) | 38, 448 |
| Bsp1286I | GDGCHC | 3 cut(s) | 42, 110, 452 |
| Bsp143I | GATC | 2 cut(s) | 172, 202 |
| BspACI | CCGC | 1 cut(s) | 256 |
| BspANI | GGCC | 4 cut(s) | 40, 137, 450, 625 |
| BspCNI | CTCAG | 1 cut(s) | 616 |
| BspLI | GGNNCC | 4 cut(s) | 40, 444, 450, 661 |
| BspPI | GGATC | 2 cut(s) | 180, 210 |
| BspT107I | GGYRCC | 1 cut(s) | 442 |
| BsrBI | CCGCTC | 1 cut(s) | 256 |
| BsrDI | GCAATG | 2 cut(s) | 432, 646 |
| BssECI | CCNNGG | 1 cut(s) | 41 |
| BssMI | GATC | 2 cut(s) | 172, 202 |
| Bst2UI | CCWGG | 1 cut(s) | 43 |
| Bst6I | CTCTTC | 1 cut(s) | 56 |
| BstBAI | YACGTR | 1 cut(s) | 178 |
| BstC8I | GCNNGC | 1 cut(s) | 210 |
| BstDEI | CTNAG | 2 cut(s) | 438, 603 |
| BstF5I | GGATG | 1 cut(s) | 687 |
| BstKTI | GATC | 2 cut(s) | 175, 205 |
| BstMBI | GATC | 2 cut(s) | 172, 202 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 114, 422, 524 |
| BstNI | CCWGG | 1 cut(s) | 43 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 386 |
| BstSCI | CCNGG | 2 cut(s) | 41, 445 |
| BstSLI | GKGCMC | 3 cut(s) | 42, 110, 452 |
| BstV2I | GAAGAC | 1 cut(s) | 382 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 190, 670 |
| BsuI | GTATCC | 1 cut(s) | 441 |
| BsuRI | GGCC | 4 cut(s) | 40, 137, 450, 625 |
| BtrI | CACGTC | 1 cut(s) | 296 |
| BtsCI | GGATG | 1 cut(s) | 687 |
| Cac8I | GCNNGC | 1 cut(s) | 210 |
| Cfr13I | GGNCC | 4 cut(s) | 38, 39, 448, 449 |
| Csp6I | GTAC | 2 cut(s) | 179, 607 |
| CviAII | CATG | 1 cut(s) | 610 |
| CviQI | GTAC | 2 cut(s) | 179, 607 |
| DdeI | CTNAG | 2 cut(s) | 438, 603 |
| DpnI | GATC | 2 cut(s) | 174, 204 |
| DpnII | GATC | 2 cut(s) | 172, 202 |
| EaeI | YGGCCR | 1 cut(s) | 623 |
| Eam1104I | CTCTTC | 1 cut(s) | 56 |
| EarI | CTCTTC | 1 cut(s) | 56 |
| Eco24I | GRGCYC | 2 cut(s) | 42, 452 |
| Eco57I | CTGAAG | 1 cut(s) | 572 |
| Eco88I | CYCGRG | 1 cut(s) | 35 |
| EcoO109I | RGGNCCY | 1 cut(s) | 449 |
| EcoRII | CCWGG | 1 cut(s) | 41 |
| EcoT22I | ATGCAT | 1 cut(s) | 232 |
| EcoT38I | GRGCYC | 2 cut(s) | 42, 452 |
| FaeI | CATG | 1 cut(s) | 613 |
| FaiI | YATR | 1 cut(s) | 611 |
| FatI | CATG | 1 cut(s) | 609 |
| Fnu4HI | GCNGC | 1 cut(s) | 257 |
| FokI | GGATG | 1 cut(s) | 694 |
| FriOI | GRGCYC | 2 cut(s) | 42, 452 |
| Fsp4HI | GCNGC | 1 cut(s) | 257 |
| FspBI | CTAG | 2 cut(s) | 92, 335 |
| GluI | GCNGC | 1 cut(s) | 257 |
| HaeIII | GGCC | 4 cut(s) | 40, 137, 450, 625 |
| HapII | CCGG | 4 cut(s) | 88, 134, 446, 679 |
| Hin1II | CATG | 1 cut(s) | 613 |
| HincII | GTYRAC | 1 cut(s) | 237 |
| HindII | GTYRAC | 1 cut(s) | 237 |
| HindIII | AAGCTT | 1 cut(s) | 480 |
| HinfI | GANTC | 2 cut(s) | 387, 613 |
| HpaII | CCGG | 4 cut(s) | 88, 134, 446, 679 |
| HphI | GGTGA | 3 cut(s) | 83, 143, 253 |
| Hpy166II | GTNNAC | 4 cut(s) | 14, 48, 237, 649 |
| Hpy188I | TCNGA | 5 cut(s) | 172, 361, 541, 552, 618 |
| Hpy188III | TCNNGA | 2 cut(s) | 335, 586 |
| Hpy8I | GTNNAC | 4 cut(s) | 14, 48, 237, 649 |
| Hpy99I | CGWCG | 1 cut(s) | 297 |
| HpyAV | CCTTC | 2 cut(s) | 62, 115 |
| HpyCH4IV | ACGT | 2 cut(s) | 177, 295 |
| HpyCH4V | TGCA | 4 cut(s) | 148, 230, 374, 639 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 114, 422, 524 |
| HpyF3I | CTNAG | 2 cut(s) | 438, 603 |
| HpySE526I | ACGT | 2 cut(s) | 177, 295 |
| Hsp92II | CATG | 1 cut(s) | 613 |
| Kzo9I | GATC | 2 cut(s) | 172, 202 |
| LmnI | GCTCC | 2 cut(s) | 253, 544 |
| LweI | GCATC | 3 cut(s) | 157, 385, 556 |
| MaeI | CTAG | 2 cut(s) | 92, 335 |
| MaeII | ACGT | 2 cut(s) | 177, 295 |
| MalI | GATC | 2 cut(s) | 174, 204 |
| MbiI | CCGCTC | 1 cut(s) | 256 |
| MboI | GATC | 2 cut(s) | 172, 202 |
| MboII | GAAGA | 5 cut(s) | 73, 86, 311, 337, 382 |
| MhlI | GDGCHC | 3 cut(s) | 42, 110, 452 |
| MlsI | TGGCCA | 1 cut(s) | 625 |
| MluCI | AATT | 2 cut(s) | 284, 627 |
| MluNI | TGGCCA | 1 cut(s) | 625 |
| MlyI | GAGTC | 2 cut(s) | 396, 622 |
| MmeI | TCCRAC | 2 cut(s) | 150, 478 |
| MnlI | CCTC | 7 cut(s) | 48, 148, 172, 357, 535, 610, 644 |
| Mox20I | TGGCCA | 1 cut(s) | 625 |
| Mph1103I | ATGCAT | 1 cut(s) | 232 |
| MroXI | GAANNNNTTC | 2 cut(s) | 288, 342 |
| MscI | TGGCCA | 1 cut(s) | 625 |
| MseI | TTAA | 5 cut(s) | 27, 420, 581, 696, 706 |
| Msp20I | TGGCCA | 1 cut(s) | 625 |
| MspI | CCGG | 4 cut(s) | 88, 134, 446, 679 |
| MspR9I | CCNGG | 2 cut(s) | 43, 447 |
| MvaI | CCWGG | 1 cut(s) | 43 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 114, 422, 524 |
| NciI | CCSGG | 1 cut(s) | 447 |
| NdeII | GATC | 2 cut(s) | 172, 202 |
| NlaIII | CATG | 1 cut(s) | 613 |
| NlaIV | GGNNCC | 4 cut(s) | 40, 444, 450, 661 |
| NsiI | ATGCAT | 1 cut(s) | 232 |
| PdmI | GAANNNNTTC | 2 cut(s) | 288, 342 |
| PkrI | GCNGC | 1 cut(s) | 258 |
| PleI | GAGTC | 2 cut(s) | 395, 621 |
| PpsI | GAGTC | 2 cut(s) | 395, 621 |
| Ppu21I | YACGTR | 1 cut(s) | 178 |
| PshAI | GACNNNNGTC | 1 cut(s) | 386 |
| Psp6I | CCWGG | 1 cut(s) | 41 |
| PspGI | CCWGG | 1 cut(s) | 41 |
| PspN4I | GGNNCC | 4 cut(s) | 40, 444, 450, 661 |
| PspOMI | GGGCCC | 2 cut(s) | 38, 448 |
| PspPI | GGNCC | 4 cut(s) | 38, 39, 448, 449 |
| RsaI | GTAC | 2 cut(s) | 180, 608 |
| RsaNI | GTAC | 2 cut(s) | 179, 607 |
| SaqAI | TTAA | 5 cut(s) | 27, 420, 581, 696, 706 |
| SatI | GCNGC | 1 cut(s) | 257 |
| Sau3AI | GATC | 2 cut(s) | 172, 202 |
| Sau96I | GGNCC | 4 cut(s) | 38, 39, 448, 449 |
| SchI | GAGTC | 2 cut(s) | 396, 622 |
| ScrFI | CCNGG | 2 cut(s) | 43, 447 |
| SduI | GDGCHC | 3 cut(s) | 42, 110, 452 |
| SfaNI | GCATC | 3 cut(s) | 157, 385, 556 |
| Sse9I | AATT | 2 cut(s) | 284, 627 |
| SsiI | CCGC | 1 cut(s) | 256 |
| SspMI | CTAG | 2 cut(s) | 92, 335 |
| StyD4I | CCNGG | 2 cut(s) | 41, 445 |
| TaiI | ACGT | 2 cut(s) | 180, 298 |
| TaqI | TCGA | 3 cut(s) | 164, 292, 393 |
| TasI | AATT | 2 cut(s) | 284, 627 |
| TatI | WGTACW | 1 cut(s) | 606 |
| TauI | GCSGC | 1 cut(s) | 259 |
| Tru1I | TTAA | 5 cut(s) | 27, 420, 581, 696, 706 |
| Tru9I | TTAA | 5 cut(s) | 27, 420, 581, 696, 706 |
| TspDTI | ATGAA | 2 cut(s) | 297, 698 |
| TspGWI | ACGGA | 1 cut(s) | 125 |
| XbaI | TCTAGA | 1 cut(s) | 334 |
| XmnI | GAANNNNTTC | 2 cut(s) | 288, 342 |
| XspI | CTAG | 2 cut(s) | 92, 335 |
| Zsp2I | ATGCAT | 1 cut(s) | 232 |