ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 150 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 363 |
| AccII | CGCG | 1 cut(s) | 207 |
| AccIII | TCCGGA | 1 cut(s) | 249 |
| AciI | CCGC | 1 cut(s) | 207 |
| AclWI | GGATC | 1 cut(s) | 229 |
| AcoI | YGGCCR | 2 cut(s) | 261, 336 |
| AcsI | RAATTY | 1 cut(s) | 432 |
| AcyI | GRCGYC | 1 cut(s) | 147 |
| AfaI | GTAC | 2 cut(s) | 81, 243 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 363 |
| AgsI | TTSAA | 1 cut(s) | 427 |
| AjnI | CCWGG | 2 cut(s) | 362, 404 |
| AluBI | AGCT | 2 cut(s) | 344, 503 |
| AluI | AGCT | 2 cut(s) | 344, 503 |
| Alw26I | GTCTC | 2 cut(s) | 47, 251 |
| AlwI | GGATC | 1 cut(s) | 229 |
| Aor13HI | TCCGGA | 1 cut(s) | 249 |
| AoxI | GGCC | 4 cut(s) | 37, 261, 336, 460 |
| ApaI | GGGCCC | 1 cut(s) | 464 |
| ApeKI | GCWGC | 1 cut(s) | 344 |
| ApoI | RAATTY | 1 cut(s) | 432 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 518, 550 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 393 |
| AspS9I | GGNCC | 3 cut(s) | 37, 460, 461 |
| AsuC2I | CCSGG | 2 cut(s) | 443, 464 |
| AsuHPI | GGTGA | 1 cut(s) | 544 |
| AsuII | TTCGAA | 1 cut(s) | 376 |
| BaeGI | GKGCMC | 1 cut(s) | 464 |
| BalI | TGGCCA | 1 cut(s) | 338 |
| BanII | GRGCYC | 1 cut(s) | 464 |
| BbvI | GCAGC | 1 cut(s) | 331 |
| BccI | CCATC | 1 cut(s) | 164 |
| BciT130I | CCWGG | 2 cut(s) | 364, 406 |
| BcnI | CCSGG | 2 cut(s) | 443, 464 |
| BcoDI | GTCTC | 2 cut(s) | 47, 251 |
| BfaI | CTAG | 1 cut(s) | 122 |
| BglII | AGATCT | 1 cut(s) | 15 |
| BisI | GCNGC | 1 cut(s) | 345 |
| BlsI | GCNGC | 1 cut(s) | 346 |
| Bme1390I | CCNGG | 4 cut(s) | 364, 406, 443, 464 |
| BmgT120I | GGNCC | 3 cut(s) | 37, 460, 461 |
| BmiI | GGNNCC | 4 cut(s) | 38, 368, 461, 462 |
| BmrFI | CCNGG | 4 cut(s) | 364, 406, 443, 464 |
| BmrI | ACTGGG | 2 cut(s) | 90, 221 |
| BmsI | GCATC | 1 cut(s) | 265 |
| BmuI | ACTGGG | 2 cut(s) | 90, 221 |
| BoxI | GACNNNNGTC | 1 cut(s) | 150 |
| Bpu14I | TTCGAA | 1 cut(s) | 376 |
| BpuMI | CCSGG | 2 cut(s) | 443, 464 |
| Bsa29I | ATCGAT | 1 cut(s) | 273 |
| BsaHI | GRCGYC | 1 cut(s) | 147 |
| BsaI | GGTCTC | 1 cut(s) | 47 |
| BsaJI | CCNNGG | 2 cut(s) | 188, 404 |
| BsaWI | WCCGGW | 1 cut(s) | 249 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 363 |
| Bse1I | ACTGG | 2 cut(s) | 96, 216 |
| BseAI | TCCGGA | 1 cut(s) | 249 |
| BseBI | CCWGG | 2 cut(s) | 364, 406 |
| BseCI | ATCGAT | 1 cut(s) | 273 |
| BseDI | CCNNGG | 2 cut(s) | 188, 404 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 363 |
| BseNI | ACTGG | 2 cut(s) | 96, 216 |
| BseSI | GKGCMC | 1 cut(s) | 464 |
| BseXI | GCAGC | 1 cut(s) | 331 |
| BseYI | CCCAGC | 1 cut(s) | 416 |
| Bsh1236I | CGCG | 1 cut(s) | 207 |
| BshFI | GGCC | 4 cut(s) | 39, 263, 338, 462 |
| BshVI | ATCGAT | 1 cut(s) | 273 |
| BsiSI | CCGG | 3 cut(s) | 250, 442, 464 |
| BslFI | GGGAC | 1 cut(s) | 228 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 363 |
| BsmAI | GTCTC | 2 cut(s) | 47, 251 |
| BsmBI | CGTCTC | 1 cut(s) | 251 |
| BsmFI | GGGAC | 1 cut(s) | 228 |
| BsnI | GGCC | 4 cut(s) | 39, 263, 338, 462 |
| Bso31I | GGTCTC | 1 cut(s) | 47 |
| Bsp119I | TTCGAA | 1 cut(s) | 376 |
| Bsp120I | GGGCCC | 1 cut(s) | 460 |
| Bsp1286I | GDGCHC | 1 cut(s) | 464 |
| Bsp13I | TCCGGA | 1 cut(s) | 249 |
| Bsp143I | GATC | 2 cut(s) | 15, 234 |
| BspACI | CCGC | 1 cut(s) | 207 |
| BspANI | GGCC | 4 cut(s) | 39, 263, 338, 462 |
| BspDI | ATCGAT | 1 cut(s) | 273 |
| BspEI | TCCGGA | 1 cut(s) | 249 |
| BspFNI | CGCG | 1 cut(s) | 207 |
| BspLI | GGNNCC | 4 cut(s) | 38, 368, 461, 462 |
| BspPI | GGATC | 1 cut(s) | 229 |
| BspT104I | TTCGAA | 1 cut(s) | 376 |
| BspTNI | GGTCTC | 1 cut(s) | 47 |
| BsrI | ACTGG | 2 cut(s) | 96, 216 |
| BssECI | CCNNGG | 2 cut(s) | 188, 404 |
| BssMI | GATC | 2 cut(s) | 15, 234 |
| BssNI | GRCGYC | 1 cut(s) | 147 |
| Bst2UI | CCWGG | 2 cut(s) | 364, 406 |
| BstACI | GRCGYC | 1 cut(s) | 147 |
| BstBI | TTCGAA | 1 cut(s) | 376 |
| BstDEI | CTNAG | 1 cut(s) | 19 |
| BstDSI | CCRYGG | 1 cut(s) | 188 |
| BstFNI | CGCG | 1 cut(s) | 207 |
| BstKTI | GATC | 2 cut(s) | 18, 237 |
| BstMAI | GTCTC | 2 cut(s) | 47, 251 |
| BstMBI | GATC | 2 cut(s) | 15, 234 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 344 |
| BstNI | CCWGG | 2 cut(s) | 364, 406 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 150 |
| BstSCI | CCNGG | 4 cut(s) | 362, 404, 441, 462 |
| BstSLI | GKGCMC | 1 cut(s) | 464 |
| BstUI | CGCG | 1 cut(s) | 207 |
| BstV1I | GCAGC | 1 cut(s) | 331 |
| BstX2I | RGATCY | 2 cut(s) | 15, 234 |
| BstYI | RGATCY | 2 cut(s) | 15, 234 |
| Bsu15I | ATCGAT | 1 cut(s) | 273 |
| BsuRI | GGCC | 4 cut(s) | 39, 263, 338, 462 |
| BsuTUI | ATCGAT | 1 cut(s) | 273 |
| BtgI | CCRYGG | 1 cut(s) | 188 |
| Cfr13I | GGNCC | 3 cut(s) | 37, 460, 461 |
| ClaI | ATCGAT | 1 cut(s) | 273 |
| CseI | GACGC | 1 cut(s) | 71 |
| Csp6I | GTAC | 2 cut(s) | 80, 242 |
| CviAII | CATG | 2 cut(s) | 239, 529 |
| CviJI | RGCY | 8 cut(s) | 39, 125, 263, 338, 344, 462, 467, 503 |
| CviKI_1 | RGCY | 8 cut(s) | 39, 125, 263, 338, 344, 462, 467, 503 |
| CviQI | GTAC | 2 cut(s) | 80, 242 |
| DdeI | CTNAG | 1 cut(s) | 19 |
| DpnI | GATC | 2 cut(s) | 17, 236 |
| DpnII | GATC | 2 cut(s) | 15, 234 |
| EaeI | YGGCCR | 2 cut(s) | 261, 336 |
| Eco24I | GRGCYC | 1 cut(s) | 464 |
| Eco31I | GGTCTC | 1 cut(s) | 47 |
| EcoO109I | RGGNCCY | 2 cut(s) | 37, 460 |
| EcoRII | CCWGG | 2 cut(s) | 362, 404 |
| EcoT38I | GRGCYC | 1 cut(s) | 464 |
| Esp3I | CGTCTC | 1 cut(s) | 251 |
| FaeI | CATG | 2 cut(s) | 242, 532 |
| FaiI | YATR | 5 cut(s) | 101, 240, 270, 330, 530 |
| FaqI | GGGAC | 1 cut(s) | 228 |
| FatI | CATG | 2 cut(s) | 238, 528 |
| Fnu4HI | GCNGC | 1 cut(s) | 345 |
| FriOI | GRGCYC | 1 cut(s) | 464 |
| Fsp4HI | GCNGC | 1 cut(s) | 345 |
| FspBI | CTAG | 1 cut(s) | 122 |
| GluI | GCNGC | 1 cut(s) | 345 |
| GsaI | CCCAGC | 1 cut(s) | 420 |
| HaeIII | GGCC | 4 cut(s) | 39, 263, 338, 462 |
| HapII | CCGG | 3 cut(s) | 250, 442, 464 |
| HgaI | GACGC | 1 cut(s) | 71 |
| Hin1I | GRCGYC | 1 cut(s) | 147 |
| Hin1II | CATG | 2 cut(s) | 242, 532 |
| HinfI | GANTC | 2 cut(s) | 324, 492 |
| HpaII | CCGG | 3 cut(s) | 250, 442, 464 |
| HphI | GGTGA | 1 cut(s) | 544 |
| Hpy188I | TCNGA | 4 cut(s) | 115, 301, 483, 497 |
| Hpy188III | TCNNGA | 2 cut(s) | 52, 250 |
| Hpy99I | CGWCG | 2 cut(s) | 156, 159 |
| HpyAV | CCTTC | 1 cut(s) | 296 |
| HpyCH4IV | ACGT | 3 cut(s) | 82, 147, 244 |
| HpyCH4V | TGCA | 2 cut(s) | 4, 278 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 344 |
| HpyF3I | CTNAG | 1 cut(s) | 19 |
| HpySE526I | ACGT | 3 cut(s) | 82, 147, 244 |
| Hsp92I | GRCGYC | 1 cut(s) | 147 |
| Hsp92II | CATG | 2 cut(s) | 242, 532 |
| Kpn2I | TCCGGA | 1 cut(s) | 249 |
| Kzo9I | GATC | 2 cut(s) | 15, 234 |
| LmnI | GCTCC | 1 cut(s) | 188 |
| Lsp1109I | GCAGC | 1 cut(s) | 331 |
| LweI | GCATC | 1 cut(s) | 265 |
| MaeI | CTAG | 1 cut(s) | 122 |
| MaeII | ACGT | 3 cut(s) | 82, 147, 244 |
| MaeIII | GTNAC | 1 cut(s) | 473 |
| MalI | GATC | 2 cut(s) | 17, 236 |
| MboI | GATC | 2 cut(s) | 15, 234 |
| MboII | GAAGA | 2 cut(s) | 206, 392 |
| MflI | RGATCY | 2 cut(s) | 15, 234 |
| MhlI | GDGCHC | 1 cut(s) | 464 |
| MlsI | TGGCCA | 1 cut(s) | 338 |
| MluCI | AATT | 3 cut(s) | 28, 69, 432 |
| MluNI | TGGCCA | 1 cut(s) | 338 |
| MmeI | TCCRAC | 1 cut(s) | 520 |
| MnlI | CCTC | 1 cut(s) | 274 |
| Mox20I | TGGCCA | 1 cut(s) | 338 |
| MroI | TCCGGA | 1 cut(s) | 249 |
| MroXI | GAANNNNTTC | 1 cut(s) | 393 |
| MscI | TGGCCA | 1 cut(s) | 338 |
| MseI | TTAA | 2 cut(s) | 12, 72 |
| MslI | CAYNNNNRTG | 1 cut(s) | 273 |
| Msp20I | TGGCCA | 1 cut(s) | 338 |
| MspA1I | CMGCKG | 1 cut(s) | 344 |
| MspI | CCGG | 3 cut(s) | 250, 442, 464 |
| MspR9I | CCNGG | 4 cut(s) | 364, 406, 443, 464 |
| MvaI | CCWGG | 2 cut(s) | 364, 406 |
| MvnI | CGCG | 1 cut(s) | 207 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 344 |
| NciI | CCSGG | 2 cut(s) | 443, 464 |
| NdeII | GATC | 2 cut(s) | 15, 234 |
| NlaIII | CATG | 2 cut(s) | 242, 532 |
| NlaIV | GGNNCC | 4 cut(s) | 38, 368, 461, 462 |
| NmeAIII | GCCGAG | 1 cut(s) | 239 |
| NmuCI | GTSAC | 1 cut(s) | 473 |
| NspV | TTCGAA | 1 cut(s) | 376 |
| PdmI | GAANNNNTTC | 1 cut(s) | 393 |
| PfeI | GAWTC | 2 cut(s) | 324, 492 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 363 |
| PkrI | GCNGC | 1 cut(s) | 346 |
| PshAI | GACNNNNGTC | 1 cut(s) | 150 |
| Psp6I | CCWGG | 2 cut(s) | 362, 404 |
| PspFI | CCCAGC | 1 cut(s) | 416 |
| PspGI | CCWGG | 2 cut(s) | 362, 404 |
| PspN4I | GGNNCC | 4 cut(s) | 38, 368, 461, 462 |
| PspOMI | GGGCCC | 1 cut(s) | 460 |
| PspPI | GGNCC | 3 cut(s) | 37, 460, 461 |
| PsuI | RGATCY | 2 cut(s) | 15, 234 |
| PvuII | CAGCTG | 1 cut(s) | 344 |
| RsaI | GTAC | 2 cut(s) | 81, 243 |
| RsaNI | GTAC | 2 cut(s) | 80, 242 |
| RseI | CAYNNNNRTG | 1 cut(s) | 273 |
| SaqAI | TTAA | 2 cut(s) | 12, 72 |
| SatI | GCNGC | 1 cut(s) | 345 |
| Sau3AI | GATC | 2 cut(s) | 15, 234 |
| Sau96I | GGNCC | 3 cut(s) | 37, 460, 461 |
| ScrFI | CCNGG | 4 cut(s) | 364, 406, 443, 464 |
| SduI | GDGCHC | 1 cut(s) | 464 |
| SfaNI | GCATC | 1 cut(s) | 265 |
| SfuI | TTCGAA | 1 cut(s) | 376 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 273 |
| Sse9I | AATT | 3 cut(s) | 28, 69, 432 |
| SsiI | CCGC | 1 cut(s) | 207 |
| SspMI | CTAG | 1 cut(s) | 122 |
| StyD4I | CCNGG | 4 cut(s) | 362, 404, 441, 462 |
| TaiI | ACGT | 3 cut(s) | 85, 150, 247 |
| TaqI | TCGA | 4 cut(s) | 51, 157, 273, 376 |
| TasI | AATT | 3 cut(s) | 28, 69, 432 |
| TfiI | GAWTC | 2 cut(s) | 324, 492 |
| Tru1I | TTAA | 2 cut(s) | 12, 72 |
| Tru9I | TTAA | 2 cut(s) | 12, 72 |
| TseFI | GTSAC | 1 cut(s) | 473 |
| TseI | GCWGC | 1 cut(s) | 344 |
| Tsp45I | GTSAC | 1 cut(s) | 473 |
| TspDTI | ATGAA | 1 cut(s) | 386 |
| TspGWI | ACGGA | 1 cut(s) | 140 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 363 |
| XapI | RAATTY | 1 cut(s) | 432 |
| XmnI | GAANNNNTTC | 1 cut(s) | 393 |
| XspI | CTAG | 1 cut(s) | 122 |
| ZraI | GACGTC | 1 cut(s) | 148 |