ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 367, 657 |
| AciI | CCGC | 6 cut(s) | 128, 254, 458, 613, 733, 785 |
| AclWI | GGATC | 1 cut(s) | 404 |
| AcoI | YGGCCR | 1 cut(s) | 734 |
| AgsI | TTSAA | 3 cut(s) | 158, 386, 556 |
| AjnI | CCWGG | 1 cut(s) | 453 |
| AluBI | AGCT | 1 cut(s) | 805 |
| AluI | AGCT | 1 cut(s) | 805 |
| Alw26I | GTCTC | 1 cut(s) | 762 |
| AlwI | GGATC | 1 cut(s) | 404 |
| AoxI | GGCC | 4 cut(s) | 339, 649, 724, 734 |
| ApeKI | GCWGC | 2 cut(s) | 355, 805 |
| AspS9I | GGNCC | 3 cut(s) | 185, 339, 725 |
| AsuHPI | GGTGA | 1 cut(s) | 687 |
| AvaII | GGWCC | 1 cut(s) | 185 |
| BbvI | GCAGC | 2 cut(s) | 367, 792 |
| BceAI | ACGGC | 1 cut(s) | 301 |
| BciT130I | CCWGG | 1 cut(s) | 455 |
| BclI | TGATCA | 1 cut(s) | 307 |
| BcoDI | GTCTC | 1 cut(s) | 762 |
| BfaI | CTAG | 1 cut(s) | 545 |
| BisI | GCNGC | 4 cut(s) | 255, 356, 734, 806 |
| BlsI | GCNGC | 4 cut(s) | 256, 357, 735, 807 |
| Bme1390I | CCNGG | 1 cut(s) | 455 |
| Bme18I | GGWCC | 1 cut(s) | 185 |
| BmgT120I | GGNCC | 3 cut(s) | 185, 339, 725 |
| BmiI | GGNNCC | 1 cut(s) | 340 |
| BmrFI | CCNGG | 1 cut(s) | 455 |
| BmsI | GCATC | 1 cut(s) | 109 |
| BpuEI | CTTGAG | 1 cut(s) | 551 |
| BsaBI | GATNNNNATC | 1 cut(s) | 600 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 63, 93 |
| Bse118I | RCCGGY | 2 cut(s) | 341, 647 |
| Bse1I | ACTGG | 2 cut(s) | 61, 187 |
| Bse8I | GATNNNNATC | 1 cut(s) | 600 |
| BseBI | CCWGG | 1 cut(s) | 455 |
| BseGI | GGATG | 1 cut(s) | 115 |
| BseJI | GATNNNNATC | 1 cut(s) | 600 |
| BseMII | CTCAG | 1 cut(s) | 775 |
| BseNI | ACTGG | 2 cut(s) | 61, 187 |
| BseRI | GAGGAG | 1 cut(s) | 509 |
| BseXI | GCAGC | 2 cut(s) | 367, 792 |
| BsgI | GTGCAG | 1 cut(s) | 510 |
| BshFI | GGCC | 4 cut(s) | 341, 651, 726, 736 |
| BsiSI | CCGG | 2 cut(s) | 342, 648 |
| BsmAI | GTCTC | 1 cut(s) | 762 |
| BsnI | GGCC | 4 cut(s) | 341, 651, 726, 736 |
| Bsp143I | GATC | 3 cut(s) | 307, 396, 601 |
| BspACI | CCGC | 6 cut(s) | 128, 254, 458, 613, 733, 785 |
| BspANI | GGCC | 4 cut(s) | 341, 651, 726, 736 |
| BspCNI | CTCAG | 1 cut(s) | 774 |
| BspLI | GGNNCC | 1 cut(s) | 340 |
| BspPI | GGATC | 1 cut(s) | 404 |
| BsrFI | RCCGGY | 2 cut(s) | 341, 647 |
| BsrI | ACTGG | 2 cut(s) | 61, 187 |
| BssAI | RCCGGY | 2 cut(s) | 341, 647 |
| BssMI | GATC | 3 cut(s) | 307, 396, 601 |
| Bst2UI | CCWGG | 1 cut(s) | 455 |
| Bst6I | CTCTTC | 1 cut(s) | 682 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 644 |
| BstC8I | GCNNGC | 2 cut(s) | 343, 649 |
| BstDEI | CTNAG | 2 cut(s) | 537, 761 |
| BstF5I | GGATG | 1 cut(s) | 115 |
| BstKTI | GATC | 3 cut(s) | 310, 399, 604 |
| BstMAI | GTCTC | 1 cut(s) | 762 |
| BstMBI | GATC | 3 cut(s) | 307, 396, 601 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 260, 455, 644 |
| BstNI | CCWGG | 1 cut(s) | 455 |
| BstNSI | RCATGY | 1 cut(s) | 793 |
| BstSCI | CCNGG | 1 cut(s) | 453 |
| BstV1I | GCAGC | 2 cut(s) | 367, 792 |
| BsuRI | GGCC | 4 cut(s) | 341, 651, 726, 736 |
| BtsCI | GGATG | 1 cut(s) | 115 |
| Cac8I | GCNNGC | 2 cut(s) | 343, 649 |
| Cfr10I | RCCGGY | 2 cut(s) | 341, 647 |
| Cfr13I | GGNCC | 3 cut(s) | 185, 339, 725 |
| CviAII | CATG | 7 cut(s) | 76, 198, 218, 278, 287, 443, 790 |
| CviJI | RGCY | 9 cut(s) | 257, 263, 341, 390, 470, 651, 726, 736, 805 |
| CviKI_1 | RGCY | 9 cut(s) | 257, 263, 341, 390, 470, 651, 726, 736, 805 |
| DdeI | CTNAG | 2 cut(s) | 537, 761 |
| DpnI | GATC | 3 cut(s) | 309, 398, 603 |
| DpnII | GATC | 3 cut(s) | 307, 396, 601 |
| EaeI | YGGCCR | 1 cut(s) | 734 |
| Eam1104I | CTCTTC | 1 cut(s) | 682 |
| EarI | CTCTTC | 1 cut(s) | 682 |
| EciI | GGCGGA | 1 cut(s) | 473 |
| Eco47I | GGWCC | 1 cut(s) | 185 |
| EcoRII | CCWGG | 1 cut(s) | 453 |
| FaeI | CATG | 7 cut(s) | 79, 201, 221, 281, 290, 446, 793 |
| FatI | CATG | 7 cut(s) | 75, 197, 217, 277, 286, 442, 789 |
| FauI | CCCGC | 1 cut(s) | 121 |
| FbaI | TGATCA | 1 cut(s) | 307 |
| FblI | GTMKAC | 2 cut(s) | 367, 657 |
| Fnu4HI | GCNGC | 4 cut(s) | 255, 356, 734, 806 |
| FokI | GGATG | 1 cut(s) | 122 |
| Fsp4HI | GCNGC | 4 cut(s) | 255, 356, 734, 806 |
| FspBI | CTAG | 1 cut(s) | 545 |
| GluI | GCNGC | 4 cut(s) | 255, 356, 734, 806 |
| HaeIII | GGCC | 4 cut(s) | 341, 651, 726, 736 |
| HapII | CCGG | 2 cut(s) | 342, 648 |
| Hin1II | CATG | 7 cut(s) | 79, 201, 221, 281, 290, 446, 793 |
| HincII | GTYRAC | 1 cut(s) | 658 |
| HindII | GTYRAC | 1 cut(s) | 658 |
| HinfI | GANTC | 5 cut(s) | 9, 17, 95, 171, 560 |
| HpaII | CCGG | 2 cut(s) | 342, 648 |
| HphI | GGTGA | 1 cut(s) | 687 |
| Hpy166II | GTNNAC | 4 cut(s) | 180, 195, 368, 658 |
| Hpy188I | TCNGA | 3 cut(s) | 591, 631, 764 |
| Hpy188III | TCNNGA | 1 cut(s) | 394 |
| Hpy8I | GTNNAC | 4 cut(s) | 180, 195, 368, 658 |
| Hpy99I | CGWCG | 1 cut(s) | 659 |
| HpyAV | CCTTC | 8 cut(s) | 27, 85, 97, 152, 380, 550, 702, 708 |
| HpyCH4IV | ACGT | 2 cut(s) | 585, 663 |
| HpyCH4V | TGCA | 6 cut(s) | 122, 217, 277, 302, 491, 793 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 260, 455, 644 |
| HpyF3I | CTNAG | 2 cut(s) | 537, 761 |
| HpySE526I | ACGT | 2 cut(s) | 585, 663 |
| Hsp92II | CATG | 7 cut(s) | 79, 201, 221, 281, 290, 446, 793 |
| KroI | GCCGGC | 2 cut(s) | 341, 647 |
| KroNI | GCCGGC | 2 cut(s) | 343, 649 |
| Ksp22I | TGATCA | 1 cut(s) | 307 |
| Kzo9I | GATC | 3 cut(s) | 307, 396, 601 |
| LmnI | GCTCC | 1 cut(s) | 712 |
| Lsp1109I | GCAGC | 2 cut(s) | 367, 792 |
| LweI | GCATC | 1 cut(s) | 109 |
| MaeI | CTAG | 1 cut(s) | 545 |
| MaeII | ACGT | 2 cut(s) | 585, 663 |
| MaeIII | GTNAC | 1 cut(s) | 711 |
| MalI | GATC | 3 cut(s) | 309, 398, 603 |
| MboI | GATC | 3 cut(s) | 307, 396, 601 |
| MboII | GAAGA | 2 cut(s) | 611, 669 |
| MfeI | CAATTG | 2 cut(s) | 359, 794 |
| MluCI | AATT | 4 cut(s) | 359, 522, 621, 794 |
| MlyI | GAGTC | 1 cut(s) | 26 |
| MmeI | TCCRAC | 1 cut(s) | 68 |
| MnlI | CCTC | 9 cut(s) | 65, 198, 286, 487, 662, 691, 738, 755, 827 |
| MroNI | GCCGGC | 2 cut(s) | 341, 647 |
| MseI | TTAA | 3 cut(s) | 348, 620, 624 |
| MslI | CAYNNNNRTG | 1 cut(s) | 486 |
| MspI | CCGG | 2 cut(s) | 342, 648 |
| MspR9I | CCNGG | 1 cut(s) | 455 |
| MunI | CAATTG | 2 cut(s) | 359, 794 |
| MvaI | CCWGG | 1 cut(s) | 455 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 260, 455, 644 |
| NaeI | GCCGGC | 2 cut(s) | 343, 649 |
| NdeII | GATC | 3 cut(s) | 307, 396, 601 |
| NgoMIV | GCCGGC | 2 cut(s) | 341, 647 |
| NlaIII | CATG | 7 cut(s) | 79, 201, 221, 281, 290, 446, 793 |
| NlaIV | GGNNCC | 1 cut(s) | 340 |
| NmuCI | GTSAC | 1 cut(s) | 711 |
| NspI | RCATGY | 1 cut(s) | 793 |
| PacI | TTAATTAA | 1 cut(s) | 624 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 660 |
| PdiI | GCCGGC | 2 cut(s) | 343, 649 |
| PfeI | GAWTC | 4 cut(s) | 9, 95, 171, 560 |
| PflFI | GACNNNGTC | 1 cut(s) | 332 |
| PkrI | GCNGC | 4 cut(s) | 256, 357, 735, 807 |
| PleI | GAGTC | 1 cut(s) | 25 |
| PpsI | GAGTC | 1 cut(s) | 25 |
| Psp6I | CCWGG | 1 cut(s) | 453 |
| PspGI | CCWGG | 1 cut(s) | 453 |
| PspN4I | GGNNCC | 1 cut(s) | 340 |
| PspPI | GGNCC | 3 cut(s) | 185, 339, 725 |
| PsyI | GACNNNGTC | 1 cut(s) | 332 |
| RseI | CAYNNNNRTG | 1 cut(s) | 486 |
| SalI | GTCGAC | 1 cut(s) | 656 |
| SaqAI | TTAA | 3 cut(s) | 348, 620, 624 |
| SatI | GCNGC | 4 cut(s) | 255, 356, 734, 806 |
| Sau3AI | GATC | 3 cut(s) | 307, 396, 601 |
| Sau96I | GGNCC | 3 cut(s) | 185, 339, 725 |
| SchI | GAGTC | 1 cut(s) | 26 |
| ScrFI | CCNGG | 1 cut(s) | 455 |
| SfaNI | GCATC | 1 cut(s) | 109 |
| SinI | GGWCC | 1 cut(s) | 185 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 486 |
| SmlI | CTYRAG | 1 cut(s) | 566 |
| SmoI | CTYRAG | 1 cut(s) | 566 |
| Sse9I | AATT | 4 cut(s) | 359, 522, 621, 794 |
| SsiI | CCGC | 6 cut(s) | 128, 254, 458, 613, 733, 785 |
| SspMI | CTAG | 1 cut(s) | 545 |
| StyD4I | CCNGG | 1 cut(s) | 453 |
| TaiI | ACGT | 2 cut(s) | 588, 666 |
| TaqI | TCGA | 3 cut(s) | 174, 604, 657 |
| TasI | AATT | 4 cut(s) | 359, 522, 621, 794 |
| TauI | GCSGC | 2 cut(s) | 257, 736 |
| TfiI | GAWTC | 4 cut(s) | 9, 95, 171, 560 |
| Tru1I | TTAA | 3 cut(s) | 348, 620, 624 |
| Tru9I | TTAA | 3 cut(s) | 348, 620, 624 |
| TseFI | GTSAC | 1 cut(s) | 711 |
| TseI | GCWGC | 2 cut(s) | 355, 805 |
| Tsp45I | GTSAC | 1 cut(s) | 711 |
| TspDTI | ATGAA | 6 cut(s) | 124, 234, 257, 264, 459, 612 |
| TspGWI | ACGGA | 2 cut(s) | 493, 699 |
| Tth111I | GACNNNGTC | 1 cut(s) | 332 |
| VpaK11BI | GGWCC | 1 cut(s) | 185 |
| XceI | RCATGY | 1 cut(s) | 793 |
| XmiI | GTMKAC | 2 cut(s) | 367, 657 |
| XspI | CTAG | 1 cut(s) | 545 |