ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 251 |
| AccII | CGCG | 1 cut(s) | 579 |
| AciI | CCGC | 4 cut(s) | 157, 310, 850, 1034 |
| AcoI | YGGCCR | 1 cut(s) | 84 |
| AcuI | CTGAAG | 1 cut(s) | 818 |
| AfaI | GTAC | 1 cut(s) | 845 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 193, 626 |
| AflII | CTTAAG | 1 cut(s) | 989 |
| AgsI | TTSAA | 7 cut(s) | 169, 281, 374, 560, 1022, 1064, 1163 |
| AhlI | ACTAGT | 1 cut(s) | 523 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 555, 587 |
| AluBI | AGCT | 7 cut(s) | 177, 367, 383, 679, 724, 1012, 1058 |
| AluI | AGCT | 7 cut(s) | 177, 367, 383, 679, 724, 1012, 1058 |
| Alw21I | GWGCWC | 1 cut(s) | 675 |
| Alw26I | GTCTC | 1 cut(s) | 834 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 299, 1043 |
| Ama87I | CYCGRG | 1 cut(s) | 339 |
| AoxI | GGCC | 3 cut(s) | 84, 507, 545 |
| ApeKI | GCWGC | 6 cut(s) | 252, 335, 364, 383, 640, 724 |
| AspLEI | GCGC | 3 cut(s) | 127, 252, 579 |
| AspS9I | GGNCC | 1 cut(s) | 994 |
| AsuHPI | GGTGA | 1 cut(s) | 454 |
| AvaI | CYCGRG | 1 cut(s) | 339 |
| AvaII | GGWCC | 1 cut(s) | 994 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 225, 258 |
| BalI | TGGCCA | 1 cut(s) | 86 |
| BanII | GRGCYC | 2 cut(s) | 67, 868 |
| BbsI | GAAGAC | 2 cut(s) | 588, 1198 |
| Bbv12I | GWGCWC | 1 cut(s) | 675 |
| BbvI | GCAGC | 6 cut(s) | 264, 322, 370, 376, 652, 711 |
| BccI | CCATC | 5 cut(s) | 146, 155, 406, 561, 1180 |
| BceAI | ACGGC | 1 cut(s) | 1092 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 662, 696 |
| BcoDI | GTCTC | 1 cut(s) | 834 |
| BcuI | ACTAGT | 1 cut(s) | 523 |
| BfaI | CTAG | 5 cut(s) | 68, 122, 380, 524, 861 |
| BfmI | CTRYAG | 2 cut(s) | 31, 638 |
| BfrI | CTTAAG | 1 cut(s) | 989 |
| BisI | GCNGC | 8 cut(s) | 253, 336, 365, 384, 641, 725, 851, 1035 |
| BlsI | GCNGC | 8 cut(s) | 254, 337, 366, 385, 642, 726, 852, 1036 |
| BmcAI | AGTACT | 1 cut(s) | 845 |
| Bme18I | GGWCC | 1 cut(s) | 994 |
| BmeT110I | CYCGRG | 1 cut(s) | 339 |
| BmgT120I | GGNCC | 1 cut(s) | 994 |
| BmsI | GCATC | 3 cut(s) | 700, 1102, 1177 |
| BoxI | GACNNNNGTC | 1 cut(s) | 489 |
| BpiI | GAAGAC | 2 cut(s) | 588, 1198 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 185, 217 |
| BpmI | CTGGAG | 1 cut(s) | 550 |
| Bpu10I | CCTNAGC | 1 cut(s) | 590 |
| Bsa29I | ATCGAT | 1 cut(s) | 141 |
| BsaJI | CCNNGG | 1 cut(s) | 404 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 193, 626 |
| Bse1I | ACTGG | 2 cut(s) | 631, 851 |
| BseCI | ATCGAT | 1 cut(s) | 141 |
| BseDI | CCNNGG | 1 cut(s) | 404 |
| BseGI | GGATG | 3 cut(s) | 572, 1168, 1172 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 193, 626 |
| BseMII | CTCAG | 3 cut(s) | 481, 581, 786 |
| BseNI | ACTGG | 2 cut(s) | 631, 851 |
| BseRI | GAGGAG | 1 cut(s) | 803 |
| BseXI | GCAGC | 6 cut(s) | 264, 322, 370, 376, 652, 711 |
| BseYI | CCCAGC | 1 cut(s) | 57 |
| BsgI | GTGCAG | 1 cut(s) | 369 |
| Bsh1236I | CGCG | 1 cut(s) | 579 |
| BshFI | GGCC | 3 cut(s) | 86, 509, 547 |
| BshVI | ATCGAT | 1 cut(s) | 141 |
| BsiHKAI | GWGCWC | 1 cut(s) | 675 |
| BsiHKCI | CYCGRG | 1 cut(s) | 339 |
| BslFI | GGGAC | 4 cut(s) | 170, 222, 899, 963 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 193, 626 |
| BsmAI | GTCTC | 1 cut(s) | 834 |
| BsmFI | GGGAC | 4 cut(s) | 170, 222, 899, 963 |
| BsnI | GGCC | 3 cut(s) | 86, 509, 547 |
| BsoBI | CYCGRG | 1 cut(s) | 339 |
| Bsp1286I | GDGCHC | 3 cut(s) | 67, 675, 868 |
| Bsp143I | GATC | 1 cut(s) | 301 |
| Bsp19I | CCATGG | 1 cut(s) | 404 |
| BspACI | CCGC | 4 cut(s) | 157, 310, 850, 1034 |
| BspANI | GGCC | 3 cut(s) | 86, 509, 547 |
| BspCNI | CTCAG | 3 cut(s) | 480, 582, 785 |
| BspDI | ATCGAT | 1 cut(s) | 141 |
| BspFNI | CGCG | 1 cut(s) | 579 |
| BspHI | TCATGA | 2 cut(s) | 49, 190 |
| BspMAI | CTGCAG | 2 cut(s) | 35, 642 |
| BspTI | CTTAAG | 1 cut(s) | 989 |
| BsrI | ACTGG | 2 cut(s) | 631, 851 |
| BssECI | CCNNGG | 1 cut(s) | 404 |
| BssMI | GATC | 1 cut(s) | 301 |
| BssT1I | CCWWGG | 1 cut(s) | 404 |
| Bst4CI | ACNGT | 6 cut(s) | 818, 828, 858, 1045, 1069, 1196 |
| Bst6I | CTCTTC | 1 cut(s) | 837 |
| BstAFI | CTTAAG | 1 cut(s) | 989 |
| BstC8I | GCNNGC | 2 cut(s) | 63, 919 |
| BstDEI | CTNAG | 4 cut(s) | 467, 590, 772, 981 |
| BstDSI | CCRYGG | 1 cut(s) | 404 |
| BstF5I | GGATG | 3 cut(s) | 572, 1168, 1172 |
| BstFNI | CGCG | 1 cut(s) | 579 |
| BstHHI | GCGC | 3 cut(s) | 127, 252, 579 |
| BstKTI | GATC | 1 cut(s) | 304 |
| BstMAI | GTCTC | 1 cut(s) | 834 |
| BstMBI | GATC | 1 cut(s) | 301 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 585, 982, 1121 |
| BstNSI | RCATGY | 2 cut(s) | 809, 1205 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 489 |
| BstSFI | CTRYAG | 2 cut(s) | 31, 638 |
| BstUI | CGCG | 1 cut(s) | 579 |
| BstV1I | GCAGC | 6 cut(s) | 264, 322, 370, 376, 652, 711 |
| BstV2I | GAAGAC | 2 cut(s) | 588, 1198 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 528 |
| Bsu15I | ATCGAT | 1 cut(s) | 141 |
| BsuRI | GGCC | 3 cut(s) | 86, 509, 547 |
| BsuTUI | ATCGAT | 1 cut(s) | 141 |
| BtgI | CCRYGG | 1 cut(s) | 404 |
| BtsCI | GGATG | 3 cut(s) | 572, 1168, 1172 |
| BtsIMutI | CAGTG | 2 cut(s) | 696, 1131 |
| Cac8I | GCNNGC | 2 cut(s) | 63, 919 |
| CaiI | CAGNNNCTG | 2 cut(s) | 299, 1043 |
| CciI | TCATGA | 2 cut(s) | 49, 190 |
| CfoI | GCGC | 3 cut(s) | 127, 252, 579 |
| Cfr13I | GGNCC | 1 cut(s) | 994 |
| ClaI | ATCGAT | 1 cut(s) | 141 |
| CseI | GACGC | 1 cut(s) | 172 |
| Csp6I | GTAC | 1 cut(s) | 844 |
| CviQI | GTAC | 1 cut(s) | 844 |
| DdeI | CTNAG | 4 cut(s) | 467, 590, 772, 981 |
| DpnI | GATC | 1 cut(s) | 303 |
| DpnII | GATC | 1 cut(s) | 301 |
| DraI | TTTAAA | 1 cut(s) | 1008 |
| EaeI | YGGCCR | 1 cut(s) | 84 |
| Eam1104I | CTCTTC | 1 cut(s) | 837 |
| EarI | CTCTTC | 1 cut(s) | 837 |
| Eco130I | CCWWGG | 1 cut(s) | 404 |
| Eco24I | GRGCYC | 2 cut(s) | 67, 868 |
| Eco32I | GATATC | 1 cut(s) | 76 |
| Eco47I | GGWCC | 1 cut(s) | 994 |
| Eco57I | CTGAAG | 1 cut(s) | 818 |
| Eco88I | CYCGRG | 1 cut(s) | 339 |
| EcoRV | GATATC | 1 cut(s) | 76 |
| EcoT14I | CCWWGG | 1 cut(s) | 404 |
| EcoT22I | ATGCAT | 2 cut(s) | 1170, 1203 |
| EcoT38I | GRGCYC | 2 cut(s) | 67, 868 |
| ErhI | CCWWGG | 1 cut(s) | 404 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 161, 193, 1142, 1174 |
| FaqI | GGGAC | 4 cut(s) | 170, 222, 899, 963 |
| FauNDI | CATATG | 1 cut(s) | 1104 |
| Fnu4HI | GCNGC | 8 cut(s) | 253, 336, 365, 384, 641, 725, 851, 1035 |
| FokI | GGATG | 3 cut(s) | 579, 1155, 1159 |
| FriOI | GRGCYC | 2 cut(s) | 67, 868 |
| Fsp4HI | GCNGC | 8 cut(s) | 253, 336, 365, 384, 641, 725, 851, 1035 |
| FspBI | CTAG | 5 cut(s) | 68, 122, 380, 524, 861 |
| FspI | TGCGCA | 1 cut(s) | 251 |
| GlaI | GCGC | 3 cut(s) | 126, 251, 578 |
| GluI | GCNGC | 8 cut(s) | 253, 336, 365, 384, 641, 725, 851, 1035 |
| GsaI | CCCAGC | 1 cut(s) | 61 |
| GsuI | CTGGAG | 1 cut(s) | 550 |
| HaeIII | GGCC | 3 cut(s) | 86, 509, 547 |
| HgaI | GACGC | 1 cut(s) | 172 |
| HhaI | GCGC | 3 cut(s) | 127, 252, 579 |
| Hin6I | GCGC | 3 cut(s) | 125, 250, 577 |
| HinP1I | GCGC | 3 cut(s) | 125, 250, 577 |
| HindIII | AAGCTT | 2 cut(s) | 677, 1010 |
| HinfI | GANTC | 6 cut(s) | 143, 165, 210, 330, 479, 733 |
| HphI | GGTGA | 1 cut(s) | 454 |
| Hpy166II | GTNNAC | 2 cut(s) | 225, 315 |
| Hpy188I | TCNGA | 5 cut(s) | 115, 484, 912, 1192, 1222 |
| Hpy188III | TCNNGA | 7 cut(s) | 25, 50, 191, 529, 737, 836, 1061 |
| Hpy8I | GTNNAC | 2 cut(s) | 225, 315 |
| HpyAV | CCTTC | 2 cut(s) | 557, 907 |
| HpyCH4III | ACNGT | 6 cut(s) | 818, 828, 858, 1045, 1069, 1196 |
| HpyCH4IV | ACGT | 1 cut(s) | 796 |
| HpyCH4V | TGCA | 9 cut(s) | 33, 386, 640, 686, 805, 811, 1089, 1168, 1201 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 585, 982, 1121 |
| HpyF3I | CTNAG | 4 cut(s) | 467, 590, 772, 981 |
| HpySE526I | ACGT | 1 cut(s) | 796 |
| HspAI | GCGC | 3 cut(s) | 125, 250, 577 |
| Kzo9I | GATC | 1 cut(s) | 301 |
| LmnI | GCTCC | 2 cut(s) | 670, 790 |
| Lsp1109I | GCAGC | 6 cut(s) | 264, 322, 370, 376, 652, 711 |
| LweI | GCATC | 3 cut(s) | 700, 1102, 1177 |
| MaeI | CTAG | 5 cut(s) | 68, 122, 380, 524, 861 |
| MaeII | ACGT | 1 cut(s) | 796 |
| MaeIII | GTNAC | 1 cut(s) | 1093 |
| MalI | GATC | 1 cut(s) | 303 |
| MboI | GATC | 1 cut(s) | 301 |
| MboII | GAAGA | 6 cut(s) | 97, 547, 572, 593, 824, 1198 |
| MfeI | CAATTG | 1 cut(s) | 800 |
| MhlI | GDGCHC | 3 cut(s) | 67, 675, 868 |
| MlsI | TGGCCA | 1 cut(s) | 86 |
| MluCI | AATT | 2 cut(s) | 645, 800 |
| MluNI | TGGCCA | 1 cut(s) | 86 |
| MlyI | GAGTC | 3 cut(s) | 204, 339, 488 |
| MmeI | TCCRAC | 2 cut(s) | 648, 802 |
| MnlI | CCTC | 9 cut(s) | 29, 187, 198, 335, 476, 499, 525, 781, 1132 |
| Mox20I | TGGCCA | 1 cut(s) | 86 |
| Mph1103I | ATGCAT | 2 cut(s) | 1170, 1203 |
| MscI | TGGCCA | 1 cut(s) | 86 |
| MslI | CAYNNNNRTG | 4 cut(s) | 243, 273, 391, 1107 |
| Msp20I | TGGCCA | 1 cut(s) | 86 |
| MspCI | CTTAAG | 1 cut(s) | 989 |
| MunI | CAATTG | 1 cut(s) | 800 |
| MvnI | CGCG | 1 cut(s) | 579 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 585, 982, 1121 |
| NcoI | CCATGG | 1 cut(s) | 404 |
| NdeI | CATATG | 1 cut(s) | 1104 |
| NdeII | GATC | 1 cut(s) | 301 |
| NmuCI | GTSAC | 1 cut(s) | 1093 |
| NsbI | TGCGCA | 1 cut(s) | 251 |
| NsiI | ATGCAT | 2 cut(s) | 1170, 1203 |
| NspI | RCATGY | 2 cut(s) | 809, 1205 |
| PaeR7I | CTCGAG | 1 cut(s) | 339 |
| PagI | TCATGA | 2 cut(s) | 49, 190 |
| PfeI | GAWTC | 3 cut(s) | 143, 165, 733 |
| PkrI | GCNGC | 8 cut(s) | 254, 337, 366, 385, 642, 726, 852, 1036 |
| PleI | GAGTC | 3 cut(s) | 204, 338, 487 |
| PpsI | GAGTC | 3 cut(s) | 204, 338, 487 |
| PshAI | GACNNNNGTC | 1 cut(s) | 489 |
| PspFI | CCCAGC | 1 cut(s) | 57 |
| PspPI | GGNCC | 1 cut(s) | 994 |
| PspXI | VCTCGAGB | 1 cut(s) | 339 |
| PstI | CTGCAG | 2 cut(s) | 35, 642 |
| PstNI | CAGNNNCTG | 2 cut(s) | 299, 1043 |
| RsaI | GTAC | 1 cut(s) | 845 |
| RsaNI | GTAC | 1 cut(s) | 844 |
| RseI | CAYNNNNRTG | 4 cut(s) | 243, 273, 391, 1107 |
| SatI | GCNGC | 8 cut(s) | 253, 336, 365, 384, 641, 725, 851, 1035 |
| Sau3AI | GATC | 1 cut(s) | 301 |
| Sau96I | GGNCC | 1 cut(s) | 994 |
| ScaI | AGTACT | 1 cut(s) | 845 |
| SchI | GAGTC | 3 cut(s) | 204, 339, 488 |
| SduI | GDGCHC | 3 cut(s) | 67, 675, 868 |
| SfaNI | GCATC | 3 cut(s) | 700, 1102, 1177 |
| SfcI | CTRYAG | 2 cut(s) | 31, 638 |
| Sfr274I | CTCGAG | 1 cut(s) | 339 |
| SinI | GGWCC | 1 cut(s) | 994 |
| SlaI | CTCGAG | 1 cut(s) | 339 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 243, 273, 391, 1107 |
| SmlI | CTYRAG | 2 cut(s) | 339, 989 |
| SmoI | CTYRAG | 2 cut(s) | 339, 989 |
| SpeI | ACTAGT | 1 cut(s) | 523 |
| Sse9I | AATT | 2 cut(s) | 645, 800 |
| SsiI | CCGC | 4 cut(s) | 157, 310, 850, 1034 |
| SspI | AATATT | 1 cut(s) | 1227 |
| SspMI | CTAG | 5 cut(s) | 68, 122, 380, 524, 861 |
| StyI | CCWWGG | 1 cut(s) | 404 |
| TaaI | ACNGT | 6 cut(s) | 818, 828, 858, 1045, 1069, 1196 |
| TaiI | ACGT | 1 cut(s) | 799 |
| TaqI | TCGA | 2 cut(s) | 141, 340 |
| TasI | AATT | 2 cut(s) | 645, 800 |
| TatI | WGTACW | 1 cut(s) | 843 |
| TauI | GCSGC | 2 cut(s) | 853, 1037 |
| TfiI | GAWTC | 3 cut(s) | 143, 165, 733 |
| TscAI | CASTG | 2 cut(s) | 703, 1138 |
| TseFI | GTSAC | 1 cut(s) | 1093 |
| TseI | GCWGC | 6 cut(s) | 252, 335, 364, 383, 640, 724 |
| Tsp45I | GTSAC | 1 cut(s) | 1093 |
| TspDTI | ATGAA | 6 cut(s) | 66, 773, 896, 905, 975, 1121 |
| TspGWI | ACGGA | 1 cut(s) | 483 |
| TspRI | CASTG | 2 cut(s) | 703, 1138 |
| Vha464I | CTTAAG | 1 cut(s) | 989 |
| VpaK11BI | GGWCC | 1 cut(s) | 994 |
| XceI | RCATGY | 2 cut(s) | 809, 1205 |
| XhoI | CTCGAG | 1 cut(s) | 339 |
| XspI | CTAG | 5 cut(s) | 68, 122, 380, 524, 861 |
| ZrmI | AGTACT | 1 cut(s) | 845 |
| Zsp2I | ATGCAT | 2 cut(s) | 1170, 1203 |