ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 220 |
| Acc36I | ACCTGC | 1 cut(s) | 554 |
| AccBSI | CCGCTC | 1 cut(s) | 541 |
| AciI | CCGC | 3 cut(s) | 539, 783, 846 |
| AcsI | RAATTY | 2 cut(s) | 356, 413 |
| AcvI | CACGTG | 1 cut(s) | 754 |
| AcyI | GRCGYC | 1 cut(s) | 217 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 206 |
| AflIII | ACRYGT | 1 cut(s) | 751 |
| AgsI | TTSAA | 4 cut(s) | 365, 608, 796, 863 |
| AluBI | AGCT | 2 cut(s) | 131, 700 |
| AluI | AGCT | 2 cut(s) | 131, 700 |
| Alw21I | GWGCWC | 1 cut(s) | 385 |
| Alw26I | GTCTC | 1 cut(s) | 279 |
| Ama87I | CYCGRG | 1 cut(s) | 759 |
| AoxI | GGCC | 2 cut(s) | 231, 406 |
| ApeKI | GCWGC | 1 cut(s) | 476 |
| ApoI | RAATTY | 2 cut(s) | 356, 413 |
| AseI | ATTAAT | 1 cut(s) | 372 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 596 |
| AspLEI | GCGC | 1 cut(s) | 243 |
| AspS9I | GGNCC | 2 cut(s) | 232, 407 |
| AsuHPI | GGTGA | 4 cut(s) | 127, 650, 785, 797 |
| AvaI | CYCGRG | 1 cut(s) | 759 |
| AxyI | CCTNAGG | 1 cut(s) | 236 |
| BaeGI | GKGCMC | 1 cut(s) | 759 |
| BbrPI | CACGTG | 1 cut(s) | 754 |
| BbsI | GAAGAC | 1 cut(s) | 560 |
| Bbv12I | GWGCWC | 1 cut(s) | 385 |
| BbvI | GCAGC | 1 cut(s) | 488 |
| BccI | CCATC | 4 cut(s) | 151, 343, 764, 819 |
| BcoDI | GTCTC | 1 cut(s) | 279 |
| BfaI | CTAG | 3 cut(s) | 449, 701, 726 |
| BfmI | CTRYAG | 1 cut(s) | 126 |
| BfoI | RGCGCY | 1 cut(s) | 244 |
| BfuAI | ACCTGC | 1 cut(s) | 554 |
| BisI | GCNGC | 3 cut(s) | 477, 539, 847 |
| BlsI | GCNGC | 3 cut(s) | 478, 540, 848 |
| BmeT110I | CYCGRG | 1 cut(s) | 759 |
| BmgT120I | GGNCC | 2 cut(s) | 232, 407 |
| BmsI | GCATC | 3 cut(s) | 112, 352, 670 |
| BpiI | GAAGAC | 1 cut(s) | 560 |
| BsaAI | YACGTR | 1 cut(s) | 754 |
| BsaHI | GRCGYC | 1 cut(s) | 217 |
| BsaJI | CCNNGG | 2 cut(s) | 480, 760 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 206 |
| Bse21I | CCTNAGG | 1 cut(s) | 236 |
| BseDI | CCNNGG | 2 cut(s) | 480, 760 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 206 |
| BseRI | GAGGAG | 1 cut(s) | 87 |
| BseSI | GKGCMC | 1 cut(s) | 759 |
| BseXI | GCAGC | 1 cut(s) | 488 |
| BseYI | CCCAGC | 1 cut(s) | 131 |
| BshFI | GGCC | 2 cut(s) | 233, 408 |
| BsiHKAI | GWGCWC | 1 cut(s) | 385 |
| BsiHKCI | CYCGRG | 1 cut(s) | 759 |
| BslFI | GGGAC | 1 cut(s) | 601 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 206 |
| BsmAI | GTCTC | 1 cut(s) | 279 |
| BsmFI | GGGAC | 1 cut(s) | 601 |
| BsnI | GGCC | 2 cut(s) | 233, 408 |
| BsoBI | CYCGRG | 1 cut(s) | 759 |
| Bsp1286I | GDGCHC | 2 cut(s) | 385, 759 |
| Bsp19I | CCATGG | 1 cut(s) | 480 |
| BspACI | CCGC | 3 cut(s) | 539, 783, 846 |
| BspANI | GGCC | 2 cut(s) | 233, 408 |
| BspMI | ACCTGC | 1 cut(s) | 554 |
| BspQI | GCTCTTC | 1 cut(s) | 548 |
| BsrBI | CCGCTC | 1 cut(s) | 541 |
| BssECI | CCNNGG | 2 cut(s) | 480, 760 |
| BssNI | GRCGYC | 1 cut(s) | 217 |
| BssT1I | CCWWGG | 1 cut(s) | 480 |
| Bst4CI | ACNGT | 2 cut(s) | 115, 339 |
| Bst6I | CTCTTC | 3 cut(s) | 311, 548, 875 |
| BstACI | GRCGYC | 1 cut(s) | 217 |
| BstBAI | YACGTR | 1 cut(s) | 754 |
| BstC8I | GCNNGC | 1 cut(s) | 150 |
| BstDEI | CTNAG | 2 cut(s) | 236, 696 |
| BstDSI | CCRYGG | 1 cut(s) | 480 |
| BstH2I | RGCGCY | 1 cut(s) | 244 |
| BstHHI | GCGC | 1 cut(s) | 243 |
| BstMAI | GTCTC | 1 cut(s) | 279 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 445, 852 |
| BstSFI | CTRYAG | 1 cut(s) | 126 |
| BstSLI | GKGCMC | 1 cut(s) | 759 |
| BstV1I | GCAGC | 1 cut(s) | 488 |
| BstV2I | GAAGAC | 1 cut(s) | 560 |
| Bsu36I | CCTNAGG | 1 cut(s) | 236 |
| BsuRI | GGCC | 2 cut(s) | 233, 408 |
| BtgI | CCRYGG | 1 cut(s) | 480 |
| BtsI | GCAGTG | 1 cut(s) | 54 |
| BtsIMutI | CAGTG | 1 cut(s) | 54 |
| BveI | ACCTGC | 1 cut(s) | 554 |
| Cac8I | GCNNGC | 1 cut(s) | 150 |
| CfoI | GCGC | 1 cut(s) | 243 |
| Cfr13I | GGNCC | 2 cut(s) | 232, 407 |
| CviAII | CATG | 8 cut(s) | 263, 389, 420, 433, 440, 481, 500, 839 |
| DdeI | CTNAG | 2 cut(s) | 236, 696 |
| DraI | TTTAAA | 1 cut(s) | 465 |
| Eam1104I | CTCTTC | 3 cut(s) | 311, 548, 875 |
| EarI | CTCTTC | 3 cut(s) | 311, 548, 875 |
| Eco130I | CCWWGG | 1 cut(s) | 480 |
| Eco72I | CACGTG | 1 cut(s) | 754 |
| Eco81I | CCTNAGG | 1 cut(s) | 236 |
| Eco88I | CYCGRG | 1 cut(s) | 759 |
| EcoO109I | RGGNCCY | 1 cut(s) | 232 |
| EcoT14I | CCWWGG | 1 cut(s) | 480 |
| ErhI | CCWWGG | 1 cut(s) | 480 |
| FaeI | CATG | 8 cut(s) | 266, 392, 423, 436, 443, 484, 503, 842 |
| FaqI | GGGAC | 1 cut(s) | 601 |
| FatI | CATG | 8 cut(s) | 262, 388, 419, 432, 439, 480, 499, 838 |
| Fnu4HI | GCNGC | 3 cut(s) | 477, 539, 847 |
| Fsp4HI | GCNGC | 3 cut(s) | 477, 539, 847 |
| FspBI | CTAG | 3 cut(s) | 449, 701, 726 |
| GlaI | GCGC | 1 cut(s) | 242 |
| GluI | GCNGC | 3 cut(s) | 477, 539, 847 |
| GsaI | CCCAGC | 1 cut(s) | 135 |
| HaeII | RGCGCY | 1 cut(s) | 244 |
| HaeIII | GGCC | 2 cut(s) | 233, 408 |
| HhaI | GCGC | 1 cut(s) | 243 |
| Hin1I | GRCGYC | 1 cut(s) | 217 |
| Hin1II | CATG | 8 cut(s) | 266, 392, 423, 436, 443, 484, 503, 842 |
| Hin6I | GCGC | 1 cut(s) | 241 |
| HinP1I | GCGC | 1 cut(s) | 241 |
| HphI | GGTGA | 4 cut(s) | 127, 650, 785, 797 |
| Hpy188I | TCNGA | 1 cut(s) | 348 |
| Hpy188III | TCNNGA | 1 cut(s) | 200 |
| Hpy99I | CGWCG | 1 cut(s) | 343 |
| HpyAV | CCTTC | 7 cut(s) | 88, 155, 620, 624, 782, 801, 857 |
| HpyCH4III | ACNGT | 2 cut(s) | 115, 339 |
| HpyCH4IV | ACGT | 3 cut(s) | 217, 510, 753 |
| HpyCH4V | TGCA | 3 cut(s) | 439, 524, 713 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 445, 852 |
| HpyF3I | CTNAG | 2 cut(s) | 236, 696 |
| HpySE526I | ACGT | 3 cut(s) | 217, 510, 753 |
| Hsp92I | GRCGYC | 1 cut(s) | 217 |
| Hsp92II | CATG | 8 cut(s) | 266, 392, 423, 436, 443, 484, 503, 842 |
| HspAI | GCGC | 1 cut(s) | 241 |
| LguI | GCTCTTC | 1 cut(s) | 548 |
| LpnPI | CCDG | 8 cut(s) | 117, 134, 168, 192, 213, 390, 549, 643 |
| Lsp1109I | GCAGC | 1 cut(s) | 488 |
| LweI | GCATC | 3 cut(s) | 112, 352, 670 |
| MaeI | CTAG | 3 cut(s) | 449, 701, 726 |
| MaeII | ACGT | 3 cut(s) | 217, 510, 753 |
| MaeIII | GTNAC | 4 cut(s) | 109, 218, 246, 527 |
| MbiI | CCGCTC | 1 cut(s) | 541 |
| MboII | GAAGA | 5 cut(s) | 328, 535, 560, 674, 883 |
| MhlI | GDGCHC | 2 cut(s) | 385, 759 |
| MmeI | TCCRAC | 2 cut(s) | 71, 710 |
| MroXI | GAANNNNTTC | 1 cut(s) | 596 |
| MseI | TTAA | 6 cut(s) | 18, 36, 291, 372, 464, 648 |
| MslI | CAYNNNNRTG | 2 cut(s) | 143, 513 |
| MspA1I | CMGCKG | 1 cut(s) | 131 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 445, 852 |
| NcoI | CCATGG | 1 cut(s) | 480 |
| NlaIII | CATG | 8 cut(s) | 266, 392, 423, 436, 443, 484, 503, 842 |
| NmuCI | GTSAC | 3 cut(s) | 218, 246, 527 |
| PciSI | GCTCTTC | 1 cut(s) | 548 |
| PdmI | GAANNNNTTC | 1 cut(s) | 596 |
| PkrI | GCNGC | 3 cut(s) | 478, 540, 848 |
| PmaCI | CACGTG | 1 cut(s) | 754 |
| PmlI | CACGTG | 1 cut(s) | 754 |
| Ppu21I | YACGTR | 1 cut(s) | 754 |
| PshBI | ATTAAT | 1 cut(s) | 372 |
| PspCI | CACGTG | 1 cut(s) | 754 |
| PspFI | CCCAGC | 1 cut(s) | 131 |
| PspPI | GGNCC | 2 cut(s) | 232, 407 |
| PvuII | CAGCTG | 1 cut(s) | 131 |
| RseI | CAYNNNNRTG | 2 cut(s) | 143, 513 |
| SapI | GCTCTTC | 1 cut(s) | 548 |
| SaqAI | TTAA | 6 cut(s) | 18, 36, 291, 372, 464, 648 |
| SatI | GCNGC | 3 cut(s) | 477, 539, 847 |
| Sau96I | GGNCC | 2 cut(s) | 232, 407 |
| SduI | GDGCHC | 2 cut(s) | 385, 759 |
| SfaNI | GCATC | 3 cut(s) | 112, 352, 670 |
| SfcI | CTRYAG | 1 cut(s) | 126 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 143, 513 |
| SsiI | CCGC | 3 cut(s) | 539, 783, 846 |
| SspMI | CTAG | 3 cut(s) | 449, 701, 726 |
| StyI | CCWWGG | 1 cut(s) | 480 |
| TaaI | ACNGT | 2 cut(s) | 115, 339 |
| TaiI | ACGT | 3 cut(s) | 220, 513, 756 |
| TaqI | TCGA | 1 cut(s) | 175 |
| TauI | GCSGC | 2 cut(s) | 541, 849 |
| Tru1I | TTAA | 6 cut(s) | 18, 36, 291, 372, 464, 648 |
| Tru9I | TTAA | 6 cut(s) | 18, 36, 291, 372, 464, 648 |
| TscAI | CASTG | 1 cut(s) | 54 |
| TseFI | GTSAC | 3 cut(s) | 218, 246, 527 |
| TseI | GCWGC | 1 cut(s) | 476 |
| Tsp45I | GTSAC | 3 cut(s) | 218, 246, 527 |
| TspDTI | ATGAA | 4 cut(s) | 127, 405, 456, 486 |
| TspRI | CASTG | 1 cut(s) | 54 |
| VspI | ATTAAT | 1 cut(s) | 372 |
| XapI | RAATTY | 2 cut(s) | 356, 413 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 417 |
| XmnI | GAANNNNTTC | 1 cut(s) | 596 |
| XspI | CTAG | 3 cut(s) | 449, 701, 726 |
| ZraI | GACGTC | 1 cut(s) | 218 |