ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 119 |
| AccIII | TCCGGA | 2 cut(s) | 367, 378 |
| AciI | CCGC | 2 cut(s) | 119, 572 |
| AclI | AACGTT | 1 cut(s) | 696 |
| AcuI | CTGAAG | 1 cut(s) | 110 |
| AfaI | GTAC | 4 cut(s) | 301, 622, 654, 704 |
| AgsI | TTSAA | 4 cut(s) | 199, 449, 492, 717 |
| AluBI | AGCT | 2 cut(s) | 50, 316 |
| AluI | AGCT | 2 cut(s) | 50, 316 |
| Alw26I | GTCTC | 5 cut(s) | 93, 166, 201, 415, 501 |
| Aor13HI | TCCGGA | 2 cut(s) | 367, 378 |
| AoxI | GGCC | 1 cut(s) | 96 |
| ApeKI | GCWGC | 1 cut(s) | 467 |
| AspS9I | GGNCC | 1 cut(s) | 97 |
| AsuC2I | CCSGG | 2 cut(s) | 428, 501 |
| BanII | GRGCYC | 1 cut(s) | 433 |
| BbsI | GAAGAC | 1 cut(s) | 26 |
| BbvI | GCAGC | 1 cut(s) | 454 |
| BccI | CCATC | 5 cut(s) | 159, 197, 237, 394, 503 |
| BcnI | CCSGG | 2 cut(s) | 428, 501 |
| BcoDI | GTCTC | 5 cut(s) | 93, 166, 201, 415, 501 |
| BfaI | CTAG | 2 cut(s) | 389, 506 |
| BisI | GCNGC | 1 cut(s) | 468 |
| BlsI | GCNGC | 1 cut(s) | 469 |
| Bme1390I | CCNGG | 2 cut(s) | 428, 501 |
| BmgT120I | GGNCC | 1 cut(s) | 97 |
| BmiI | GGNNCC | 1 cut(s) | 99 |
| BmrFI | CCNGG | 2 cut(s) | 428, 501 |
| BmrI | ACTGGG | 1 cut(s) | 652 |
| BmsI | GCATC | 2 cut(s) | 493, 589 |
| BmuI | ACTGGG | 1 cut(s) | 652 |
| BpiI | GAAGAC | 1 cut(s) | 26 |
| BpmI | CTGGAG | 1 cut(s) | 23 |
| BpuMI | CCSGG | 2 cut(s) | 428, 501 |
| BsaI | GGTCTC | 2 cut(s) | 201, 415 |
| BsaWI | WCCGGW | 2 cut(s) | 367, 378 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 163, 193 |
| Bse1I | ACTGG | 1 cut(s) | 658 |
| BseAI | TCCGGA | 2 cut(s) | 367, 378 |
| BseGI | GGATG | 4 cut(s) | 208, 316, 484, 604 |
| BseMII | CTCAG | 1 cut(s) | 596 |
| BseNI | ACTGG | 1 cut(s) | 658 |
| BseRI | GAGGAG | 2 cut(s) | 137, 320 |
| BseXI | GCAGC | 1 cut(s) | 454 |
| BshFI | GGCC | 1 cut(s) | 98 |
| BsiSI | CCGG | 4 cut(s) | 368, 379, 427, 500 |
| BsmAI | GTCTC | 5 cut(s) | 93, 166, 201, 415, 501 |
| BsmBI | CGTCTC | 1 cut(s) | 93 |
| BsnI | GGCC | 1 cut(s) | 98 |
| Bso31I | GGTCTC | 2 cut(s) | 201, 415 |
| Bsp1286I | GDGCHC | 1 cut(s) | 433 |
| Bsp13I | TCCGGA | 2 cut(s) | 367, 378 |
| Bsp1407I | TGTACA | 2 cut(s) | 299, 702 |
| Bsp143I | GATC | 1 cut(s) | 142 |
| BspACI | CCGC | 2 cut(s) | 119, 572 |
| BspANI | GGCC | 1 cut(s) | 98 |
| BspCNI | CTCAG | 1 cut(s) | 597 |
| BspEI | TCCGGA | 2 cut(s) | 367, 378 |
| BspLI | GGNNCC | 1 cut(s) | 99 |
| BspTNI | GGTCTC | 2 cut(s) | 201, 415 |
| BsrBI | CCGCTC | 1 cut(s) | 119 |
| BsrGI | TGTACA | 2 cut(s) | 299, 702 |
| BsrI | ACTGG | 1 cut(s) | 658 |
| BssMI | GATC | 1 cut(s) | 142 |
| Bst4CI | ACNGT | 1 cut(s) | 620 |
| Bst6I | CTCTTC | 1 cut(s) | 102 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 673 |
| BstAUI | TGTACA | 2 cut(s) | 299, 702 |
| BstC8I | GCNNGC | 1 cut(s) | 482 |
| BstDEI | CTNAG | 2 cut(s) | 605, 683 |
| BstF5I | GGATG | 4 cut(s) | 208, 316, 484, 604 |
| BstKTI | GATC | 2 cut(s) | 145, 762 |
| BstMAI | GTCTC | 5 cut(s) | 93, 166, 201, 415, 501 |
| BstMBI | GATC | 1 cut(s) | 142 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 608, 673 |
| BstNSI | RCATGY | 1 cut(s) | 484 |
| BstSCI | CCNGG | 2 cut(s) | 426, 499 |
| BstV1I | GCAGC | 1 cut(s) | 454 |
| BstV2I | GAAGAC | 1 cut(s) | 26 |
| BsuRI | GGCC | 1 cut(s) | 98 |
| BtsCI | GGATG | 4 cut(s) | 208, 316, 484, 604 |
| Cac8I | GCNNGC | 1 cut(s) | 482 |
| Cfr13I | GGNCC | 1 cut(s) | 97 |
| CseI | GACGC | 1 cut(s) | 665 |
| Csp6I | GTAC | 4 cut(s) | 300, 621, 653, 703 |
| CviAII | CATG | 1 cut(s) | 481 |
| CviJI | RGCY | 9 cut(s) | 50, 98, 316, 431, 467, 513, 611, 632, 742 |
| CviKI_1 | RGCY | 9 cut(s) | 50, 98, 316, 431, 467, 513, 611, 632, 742 |
| CviQI | GTAC | 4 cut(s) | 300, 621, 653, 703 |
| DdeI | CTNAG | 2 cut(s) | 605, 683 |
| DpnI | GATC | 2 cut(s) | 144, 761 |
| DpnII | GATC | 1 cut(s) | 142 |
| Eam1104I | CTCTTC | 1 cut(s) | 102 |
| EarI | CTCTTC | 1 cut(s) | 102 |
| Eco24I | GRGCYC | 1 cut(s) | 433 |
| Eco31I | GGTCTC | 2 cut(s) | 201, 415 |
| Eco57I | CTGAAG | 1 cut(s) | 110 |
| EcoT22I | ATGCAT | 1 cut(s) | 486 |
| EcoT38I | GRGCYC | 1 cut(s) | 433 |
| Esp3I | CGTCTC | 1 cut(s) | 93 |
| FaeI | CATG | 1 cut(s) | 484 |
| FaiI | YATR | 8 cut(s) | 35, 53, 398, 482, 563, 663, 665, 758 |
| FatI | CATG | 1 cut(s) | 480 |
| Fnu4HI | GCNGC | 1 cut(s) | 468 |
| FokI | GGATG | 4 cut(s) | 215, 323, 471, 611 |
| FriOI | GRGCYC | 1 cut(s) | 433 |
| Fsp4HI | GCNGC | 1 cut(s) | 468 |
| FspBI | CTAG | 2 cut(s) | 389, 506 |
| GluI | GCNGC | 1 cut(s) | 468 |
| GsuI | CTGGAG | 1 cut(s) | 23 |
| HaeIII | GGCC | 1 cut(s) | 98 |
| HapII | CCGG | 4 cut(s) | 368, 379, 427, 500 |
| HgaI | GACGC | 1 cut(s) | 665 |
| Hin1II | CATG | 1 cut(s) | 484 |
| HinfI | GANTC | 4 cut(s) | 5, 83, 237, 752 |
| HpaII | CCGG | 4 cut(s) | 368, 379, 427, 500 |
| Hpy166II | GTNNAC | 5 cut(s) | 300, 354, 616, 680, 703 |
| Hpy188I | TCNGA | 2 cut(s) | 415, 606 |
| Hpy188III | TCNNGA | 7 cut(s) | 155, 241, 368, 379, 389, 506, 532 |
| Hpy8I | GTNNAC | 5 cut(s) | 300, 354, 616, 680, 703 |
| Hpy99I | CGWCG | 1 cut(s) | 598 |
| HpyAV | CCTTC | 4 cut(s) | 193, 314, 386, 498 |
| HpyCH4III | ACNGT | 1 cut(s) | 620 |
| HpyCH4IV | ACGT | 2 cut(s) | 178, 696 |
| HpyCH4V | TGCA | 4 cut(s) | 182, 484, 667, 693 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 608, 673 |
| HpyF3I | CTNAG | 2 cut(s) | 605, 683 |
| HpySE526I | ACGT | 2 cut(s) | 178, 696 |
| Hsp92II | CATG | 1 cut(s) | 484 |
| Kpn2I | TCCGGA | 2 cut(s) | 367, 378 |
| Kzo9I | GATC | 1 cut(s) | 142 |
| Lsp1109I | GCAGC | 1 cut(s) | 454 |
| LweI | GCATC | 2 cut(s) | 493, 589 |
| MaeI | CTAG | 2 cut(s) | 389, 506 |
| MaeII | ACGT | 2 cut(s) | 178, 696 |
| MalI | GATC | 2 cut(s) | 144, 761 |
| MbiI | CCGCTC | 1 cut(s) | 119 |
| MboI | GATC | 1 cut(s) | 142 |
| MboII | GAAGA | 9 cut(s) | 31, 116, 119, 217, 268, 351, 383, 431, 520 |
| MhlI | GDGCHC | 1 cut(s) | 433 |
| MluCI | AATT | 3 cut(s) | 220, 545, 708 |
| MlyI | GAGTC | 3 cut(s) | 14, 77, 246 |
| MnlI | CCTC | 9 cut(s) | 103, 158, 221, 280, 298, 301, 409, 448, 600 |
| Mph1103I | ATGCAT | 1 cut(s) | 486 |
| MroI | TCCGGA | 2 cut(s) | 367, 378 |
| MseI | TTAA | 5 cut(s) | 279, 342, 474, 635, 737 |
| MspI | CCGG | 4 cut(s) | 368, 379, 427, 500 |
| MspR9I | CCNGG | 2 cut(s) | 428, 501 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 608, 673 |
| NciI | CCSGG | 2 cut(s) | 428, 501 |
| NdeII | GATC | 1 cut(s) | 142 |
| NlaIII | CATG | 1 cut(s) | 484 |
| NlaIV | GGNNCC | 1 cut(s) | 99 |
| NsiI | ATGCAT | 1 cut(s) | 486 |
| NspI | RCATGY | 1 cut(s) | 484 |
| PaeI | GCATGC | 1 cut(s) | 484 |
| PfeI | GAWTC | 1 cut(s) | 752 |
| PkrI | GCNGC | 1 cut(s) | 469 |
| PleI | GAGTC | 3 cut(s) | 13, 77, 245 |
| PpsI | GAGTC | 3 cut(s) | 13, 77, 245 |
| Psp1406I | AACGTT | 1 cut(s) | 696 |
| PspN4I | GGNNCC | 1 cut(s) | 99 |
| PspPI | GGNCC | 1 cut(s) | 97 |
| RsaI | GTAC | 4 cut(s) | 301, 622, 654, 704 |
| RsaNI | GTAC | 4 cut(s) | 300, 621, 653, 703 |
| SaqAI | TTAA | 5 cut(s) | 279, 342, 474, 635, 737 |
| SatI | GCNGC | 1 cut(s) | 468 |
| Sau3AI | GATC | 1 cut(s) | 142 |
| Sau96I | GGNCC | 1 cut(s) | 97 |
| SchI | GAGTC | 3 cut(s) | 14, 77, 246 |
| ScrFI | CCNGG | 2 cut(s) | 428, 501 |
| SduI | GDGCHC | 1 cut(s) | 433 |
| SfaNI | GCATC | 2 cut(s) | 493, 589 |
| SphI | GCATGC | 1 cut(s) | 484 |
| Sse9I | AATT | 3 cut(s) | 220, 545, 708 |
| SsiI | CCGC | 2 cut(s) | 119, 572 |
| SspI | AATATT | 1 cut(s) | 385 |
| SspMI | CTAG | 2 cut(s) | 389, 506 |
| StyD4I | CCNGG | 2 cut(s) | 426, 499 |
| TaaI | ACNGT | 1 cut(s) | 620 |
| TaiI | ACGT | 2 cut(s) | 181, 699 |
| TaqI | TCGA | 1 cut(s) | 593 |
| TasI | AATT | 3 cut(s) | 220, 545, 708 |
| TatI | WGTACW | 2 cut(s) | 299, 702 |
| TfiI | GAWTC | 1 cut(s) | 752 |
| Tru1I | TTAA | 5 cut(s) | 279, 342, 474, 635, 737 |
| Tru9I | TTAA | 5 cut(s) | 279, 342, 474, 635, 737 |
| TseI | GCWGC | 1 cut(s) | 467 |
| TspDTI | ATGAA | 1 cut(s) | 323 |
| TspGWI | ACGGA | 2 cut(s) | 61, 611 |
| XbaI | TCTAGA | 2 cut(s) | 388, 505 |
| XceI | RCATGY | 1 cut(s) | 484 |
| XspI | CTAG | 2 cut(s) | 389, 506 |
| Zsp2I | ATGCAT | 1 cut(s) | 486 |