Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 249 |
| Acc36I | ACCTGC | 2 cut(s) | 220, 640 |
| AciI | CCGC | 2 cut(s) | 301, 416 |
| AclWI | GGATC | 2 cut(s) | 163, 559 |
| AcuI | CTGAAG | 1 cut(s) | 645 |
| AfaI | GTAC | 3 cut(s) | 448, 591, 792 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 486, 683, 745 |
| AgeI | ACCGGT | 1 cut(s) | 580 |
| AgsI | TTSAA | 3 cut(s) | 74, 701, 848 |
| AleI | CACNNNNGTG | 1 cut(s) | 122 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 189, 221 |
| AluBI | AGCT | 2 cut(s) | 665, 736 |
| AluI | AGCT | 2 cut(s) | 665, 736 |
| Alw26I | GTCTC | 2 cut(s) | 238, 714 |
| AlwI | GGATC | 2 cut(s) | 163, 559 |
| Ama87I | CYCGRG | 1 cut(s) | 724 |
| AoxI | GGCC | 1 cut(s) | 602 |
| ApeKI | GCWGC | 4 cut(s) | 365, 413, 494, 733 |
| AsiGI | ACCGGT | 1 cut(s) | 580 |
| AspLEI | GCGC | 1 cut(s) | 250 |
| AsuC2I | CCSGG | 1 cut(s) | 833 |
| AsuHPI | GGTGA | 1 cut(s) | 289 |
| AvaI | CYCGRG | 1 cut(s) | 724 |
| AxyI | CCTNAGG | 1 cut(s) | 678 |
| BanII | GRGCYC | 1 cut(s) | 692 |
| BbsI | GAAGAC | 2 cut(s) | 335, 651 |
| BbvI | GCAGC | 4 cut(s) | 352, 425, 506, 745 |
| BccI | CCATC | 1 cut(s) | 355 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 139, 173, 456, 490 |
| BciVI | GTATCC | 1 cut(s) | 302 |
| BclI | TGATCA | 1 cut(s) | 838 |
| BcnI | CCSGG | 1 cut(s) | 833 |
| BcoDI | GTCTC | 2 cut(s) | 238, 714 |
| BfaI | CTAG | 2 cut(s) | 203, 398 |
| BfuAI | ACCTGC | 2 cut(s) | 220, 640 |
| BfuI | GTATCC | 1 cut(s) | 302 |
| BglII | AGATCT | 1 cut(s) | 191 |
| BisI | GCNGC | 4 cut(s) | 366, 414, 495, 734 |
| BlsI | GCNGC | 4 cut(s) | 367, 415, 496, 735 |
| Bme1390I | CCNGG | 1 cut(s) | 833 |
| BmeT110I | CYCGRG | 1 cut(s) | 724 |
| BmiI | GGNNCC | 1 cut(s) | 689 |
| BmrFI | CCNGG | 1 cut(s) | 833 |
| BpiI | GAAGAC | 2 cut(s) | 335, 651 |
| BpmI | CTGGAG | 3 cut(s) | 197, 216, 803 |
| BpuEI | CTTGAG | 1 cut(s) | 125 |
| BpuMI | CCSGG | 1 cut(s) | 833 |
| Bsa29I | ATCGAT | 3 cut(s) | 264, 354, 539 |
| BsaBI | GATNNNNATC | 2 cut(s) | 354, 563 |
| BsaI | GGTCTC | 1 cut(s) | 238 |
| BsaJI | CCNNGG | 1 cut(s) | 25 |
| BsaWI | WCCGGW | 1 cut(s) | 580 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 189, 219, 427, 457 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 486, 683, 745 |
| Bse118I | RCCGGY | 1 cut(s) | 580 |
| Bse1I | ACTGG | 2 cut(s) | 180, 786 |
| Bse21I | CCTNAGG | 1 cut(s) | 678 |
| Bse8I | GATNNNNATC | 2 cut(s) | 354, 563 |
| BseCI | ATCGAT | 3 cut(s) | 264, 354, 539 |
| BseDI | CCNNGG | 1 cut(s) | 25 |
| BseGI | GGATG | 2 cut(s) | 344, 802 |
| BseJI | GATNNNNATC | 2 cut(s) | 354, 563 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 486, 683, 745 |
| BseMII | CTCAG | 1 cut(s) | 692 |
| BseNI | ACTGG | 2 cut(s) | 180, 786 |
| BseRI | GAGGAG | 2 cut(s) | 200, 613 |
| BseXI | GCAGC | 4 cut(s) | 352, 425, 506, 745 |
| BsgI | GTGCAG | 1 cut(s) | 100 |
| Bsh1285I | CGRYCG | 2 cut(s) | 153, 539 |
| BshFI | GGCC | 1 cut(s) | 604 |
| BshTI | ACCGGT | 1 cut(s) | 580 |
| BshVI | ATCGAT | 3 cut(s) | 264, 354, 539 |
| BsiEI | CGRYCG | 2 cut(s) | 153, 539 |
| BsiHKCI | CYCGRG | 1 cut(s) | 724 |
| BsiSI | CCGG | 3 cut(s) | 373, 581, 833 |
| BslFI | GGGAC | 1 cut(s) | 230 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 486, 683, 745 |
| BsmAI | GTCTC | 2 cut(s) | 238, 714 |
| BsmFI | GGGAC | 1 cut(s) | 230 |
| BsnI | GGCC | 1 cut(s) | 604 |
| Bso31I | GGTCTC | 1 cut(s) | 238 |
| BsoBI | CYCGRG | 1 cut(s) | 724 |
| Bsp1286I | GDGCHC | 1 cut(s) | 692 |
| Bsp1407I | TGTACA | 1 cut(s) | 589 |
| Bsp143I | GATC | 8 cut(s) | 150, 168, 191, 355, 463, 536, 564, 838 |
| BspACI | CCGC | 2 cut(s) | 301, 416 |
| BspANI | GGCC | 1 cut(s) | 604 |
| BspCNI | CTCAG | 1 cut(s) | 691 |
| BspDI | ATCGAT | 3 cut(s) | 264, 354, 539 |
| BspLI | GGNNCC | 1 cut(s) | 689 |
| BspMI | ACCTGC | 2 cut(s) | 220, 640 |
| BspPI | GGATC | 2 cut(s) | 163, 559 |
| BspTNI | GGTCTC | 1 cut(s) | 238 |
| BsrFI | RCCGGY | 1 cut(s) | 580 |
| BsrGI | TGTACA | 1 cut(s) | 589 |
| BsrI | ACTGG | 2 cut(s) | 180, 786 |
| BssAI | RCCGGY | 1 cut(s) | 580 |
| BssECI | CCNNGG | 1 cut(s) | 25 |
| BssMI | GATC | 8 cut(s) | 150, 168, 191, 355, 463, 536, 564, 838 |
| BssT1I | CCWWGG | 1 cut(s) | 25 |
| Bst4CI | ACNGT | 2 cut(s) | 121, 757 |
| BstAUI | TGTACA | 1 cut(s) | 589 |
| BstC8I | GCNNGC | 1 cut(s) | 158 |
| BstDEI | CTNAG | 1 cut(s) | 678 |
| BstF5I | GGATG | 2 cut(s) | 344, 802 |
| BstHHI | GCGC | 1 cut(s) | 250 |
| BstKTI | GATC | 8 cut(s) | 153, 171, 194, 358, 466, 539, 567, 841 |
| BstMAI | GTCTC | 2 cut(s) | 238, 714 |
| BstMBI | GATC | 8 cut(s) | 150, 168, 191, 355, 463, 536, 564, 838 |
| BstMCI | CGRYCG | 2 cut(s) | 153, 539 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 247, 646 |
| BstSCI | CCNGG | 1 cut(s) | 831 |
| BstV1I | GCAGC | 4 cut(s) | 352, 425, 506, 745 |
| BstV2I | GAAGAC | 2 cut(s) | 335, 651 |
| BstX2I | RGATCY | 1 cut(s) | 191 |
| BstYI | RGATCY | 1 cut(s) | 191 |
| Bsu15I | ATCGAT | 3 cut(s) | 264, 354, 539 |
| Bsu36I | CCTNAGG | 1 cut(s) | 678 |
| BsuI | GTATCC | 1 cut(s) | 302 |
| BsuRI | GGCC | 1 cut(s) | 604 |
| BsuTUI | ATCGAT | 3 cut(s) | 264, 354, 539 |
| BtsCI | GGATG | 2 cut(s) | 344, 802 |
| BtsI | GCAGTG | 1 cut(s) | 112 |
| BtsIMutI | CAGTG | 2 cut(s) | 112, 117 |
| BveI | ACCTGC | 2 cut(s) | 220, 640 |
| Cac8I | GCNNGC | 1 cut(s) | 158 |
| CfoI | GCGC | 1 cut(s) | 250 |
| Cfr10I | RCCGGY | 1 cut(s) | 580 |
| ClaI | ATCGAT | 3 cut(s) | 264, 354, 539 |
| CseI | GACGC | 1 cut(s) | 758 |
| Csp6I | GTAC | 3 cut(s) | 447, 590, 791 |
| CspAI | ACCGGT | 1 cut(s) | 580 |
| CviAII | CATG | 6 cut(s) | 15, 53, 432, 545, 587, 635 |
| CviJI | RGCY | 9 cut(s) | 156, 365, 497, 604, 665, 690, 736, 823, 836 |
| CviKI_1 | RGCY | 9 cut(s) | 156, 365, 497, 604, 665, 690, 736, 823, 836 |
| CviQI | GTAC | 3 cut(s) | 447, 590, 791 |
| DdeI | CTNAG | 1 cut(s) | 678 |
| DpnI | GATC | 8 cut(s) | 152, 170, 193, 357, 465, 538, 566, 840 |
| DpnII | GATC | 8 cut(s) | 150, 168, 191, 355, 463, 536, 564, 838 |
| Eco130I | CCWWGG | 1 cut(s) | 25 |
| Eco147I | AGGCCT | 1 cut(s) | 604 |
| Eco24I | GRGCYC | 1 cut(s) | 692 |
| Eco31I | GGTCTC | 1 cut(s) | 238 |
| Eco32I | GATATC | 1 cut(s) | 352 |
| Eco57I | CTGAAG | 1 cut(s) | 645 |
| Eco81I | CCTNAGG | 1 cut(s) | 678 |
| Eco88I | CYCGRG | 1 cut(s) | 724 |
| EcoRV | GATATC | 1 cut(s) | 352 |
| EcoT14I | CCWWGG | 1 cut(s) | 25 |
| EcoT38I | GRGCYC | 1 cut(s) | 692 |
| ErhI | CCWWGG | 1 cut(s) | 25 |
| FaeI | CATG | 6 cut(s) | 18, 56, 435, 548, 590, 638 |
| FaqI | GGGAC | 1 cut(s) | 230 |
| FatI | CATG | 6 cut(s) | 14, 52, 431, 544, 586, 634 |
| FauI | CCCGC | 1 cut(s) | 409 |
| FauNDI | CATATG | 1 cut(s) | 90 |
| FbaI | TGATCA | 1 cut(s) | 838 |
| Fnu4HI | GCNGC | 4 cut(s) | 366, 414, 495, 734 |
| FokI | GGATG | 2 cut(s) | 351, 809 |
| FriOI | GRGCYC | 1 cut(s) | 692 |
| Fsp4HI | GCNGC | 4 cut(s) | 366, 414, 495, 734 |
| FspBI | CTAG | 2 cut(s) | 203, 398 |
| FspI | TGCGCA | 1 cut(s) | 249 |
| GlaI | GCGC | 1 cut(s) | 249 |
| GluI | GCNGC | 4 cut(s) | 366, 414, 495, 734 |
| GsuI | CTGGAG | 3 cut(s) | 197, 216, 803 |
| HaeIII | GGCC | 1 cut(s) | 604 |
| HapII | CCGG | 3 cut(s) | 373, 581, 833 |
| HgaI | GACGC | 1 cut(s) | 758 |
| HhaI | GCGC | 1 cut(s) | 250 |
| Hin1II | CATG | 6 cut(s) | 18, 56, 435, 548, 590, 638 |
| Hin6I | GCGC | 1 cut(s) | 248 |
| HinP1I | GCGC | 1 cut(s) | 248 |
| HinfI | GANTC | 5 cut(s) | 312, 520, 541, 722, 858 |
| HpaII | CCGG | 3 cut(s) | 373, 581, 833 |
| HphI | GGTGA | 1 cut(s) | 289 |
| Hpy166II | GTNNAC | 1 cut(s) | 37 |
| Hpy188I | TCNGA | 6 cut(s) | 60, 106, 311, 328, 360, 388 |
| Hpy188III | TCNNGA | 4 cut(s) | 142, 195, 347, 398 |
| Hpy8I | GTNNAC | 1 cut(s) | 37 |
| Hpy99I | CGWCG | 1 cut(s) | 774 |
| HpyAV | CCTTC | 3 cut(s) | 281, 445, 818 |
| HpyCH4III | ACNGT | 2 cut(s) | 121, 757 |
| HpyCH4IV | ACGT | 1 cut(s) | 6 |
| HpyCH4V | TGCA | 8 cut(s) | 88, 117, 127, 241, 393, 640, 708, 817 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 247, 646 |
| HpyF3I | CTNAG | 1 cut(s) | 678 |
| HpySE526I | ACGT | 1 cut(s) | 6 |
| Hsp92II | CATG | 6 cut(s) | 18, 56, 435, 548, 590, 638 |
| HspAI | GCGC | 1 cut(s) | 248 |
| Ksp22I | TGATCA | 1 cut(s) | 838 |
| Kzo9I | GATC | 8 cut(s) | 150, 168, 191, 355, 463, 536, 564, 838 |
| LmnI | GCTCC | 5 cut(s) | 178, 482, 687, 741, 766 |
| Lsp1109I | GCAGC | 4 cut(s) | 352, 425, 506, 745 |
| MaeI | CTAG | 2 cut(s) | 203, 398 |
| MaeII | ACGT | 1 cut(s) | 6 |
| MalI | GATC | 8 cut(s) | 152, 170, 193, 357, 465, 538, 566, 840 |
| MboI | GATC | 8 cut(s) | 150, 168, 191, 355, 463, 536, 564, 838 |
| MboII | GAAGA | 4 cut(s) | 250, 335, 515, 651 |
| MflI | RGATCY | 1 cut(s) | 191 |
| MhlI | GDGCHC | 1 cut(s) | 692 |
| MluCI | AATT | 4 cut(s) | 19, 62, 133, 641 |
| MlyI | GAGTC | 2 cut(s) | 716, 852 |
| MmeI | TCCRAC | 2 cut(s) | 84, 196 |
| MseI | TTAA | 2 cut(s) | 762, 868 |
| MslI | CAYNNNNRTG | 1 cut(s) | 122 |
| MspA1I | CMGCKG | 1 cut(s) | 416 |
| MspI | CCGG | 3 cut(s) | 373, 581, 833 |
| MspR9I | CCNGG | 1 cut(s) | 833 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 247, 646 |
| NciI | CCSGG | 1 cut(s) | 833 |
| NdeI | CATATG | 1 cut(s) | 90 |
| NdeII | GATC | 8 cut(s) | 150, 168, 191, 355, 463, 536, 564, 838 |
| NlaIII | CATG | 6 cut(s) | 18, 56, 435, 548, 590, 638 |
| NlaIV | GGNNCC | 1 cut(s) | 689 |
| NsbI | TGCGCA | 1 cut(s) | 249 |
| OliI | CACNNNNGTG | 1 cut(s) | 122 |
| PceI | AGGCCT | 1 cut(s) | 604 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 862 |
| PfeI | GAWTC | 3 cut(s) | 312, 520, 541 |
| PinAI | ACCGGT | 1 cut(s) | 580 |
| PkrI | GCNGC | 4 cut(s) | 367, 415, 496, 735 |
| Ple19I | CGATCG | 2 cut(s) | 153, 539 |
| PleI | GAGTC | 2 cut(s) | 716, 852 |
| PpsI | GAGTC | 2 cut(s) | 716, 852 |
| PspN4I | GGNNCC | 1 cut(s) | 689 |
| PsuI | RGATCY | 1 cut(s) | 191 |
| PvuI | CGATCG | 2 cut(s) | 153, 539 |
| RsaI | GTAC | 3 cut(s) | 448, 591, 792 |
| RsaNI | GTAC | 3 cut(s) | 447, 590, 791 |
| RseI | CAYNNNNRTG | 1 cut(s) | 122 |
| SaqAI | TTAA | 2 cut(s) | 762, 868 |
| SatI | GCNGC | 4 cut(s) | 366, 414, 495, 734 |
| Sau3AI | GATC | 8 cut(s) | 150, 168, 191, 355, 463, 536, 564, 838 |
| SchI | GAGTC | 2 cut(s) | 716, 852 |
| ScrFI | CCNGG | 1 cut(s) | 833 |
| SduI | GDGCHC | 1 cut(s) | 692 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 122 |
| SmlI | CTYRAG | 1 cut(s) | 140 |
| SmoI | CTYRAG | 1 cut(s) | 140 |
| Sse9I | AATT | 4 cut(s) | 19, 62, 133, 641 |
| SseBI | AGGCCT | 1 cut(s) | 604 |
| SsiI | CCGC | 2 cut(s) | 301, 416 |
| SspMI | CTAG | 2 cut(s) | 203, 398 |
| StuI | AGGCCT | 1 cut(s) | 604 |
| StyD4I | CCNGG | 1 cut(s) | 831 |
| StyI | CCWWGG | 1 cut(s) | 25 |
| TaaI | ACNGT | 2 cut(s) | 121, 757 |
| TaiI | ACGT | 1 cut(s) | 9 |
| TaqI | TCGA | 7 cut(s) | 264, 346, 354, 466, 535, 539, 772 |
| TasI | AATT | 4 cut(s) | 19, 62, 133, 641 |
| TatI | WGTACW | 1 cut(s) | 589 |
| TfiI | GAWTC | 3 cut(s) | 312, 520, 541 |
| Tru1I | TTAA | 2 cut(s) | 762, 868 |
| Tru9I | TTAA | 2 cut(s) | 762, 868 |
| TscAI | CASTG | 2 cut(s) | 119, 124 |
| TseI | GCWGC | 4 cut(s) | 365, 413, 494, 733 |
| TspDTI | ATGAA | 7 cut(s) | 17, 250, 295, 533, 533, 575, 813 |
| TspGWI | ACGGA | 1 cut(s) | 557 |
| TspRI | CASTG | 2 cut(s) | 119, 124 |
| XbaI | TCTAGA | 1 cut(s) | 397 |
| XspI | CTAG | 2 cut(s) | 203, 398 |