Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 42 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 187 |
| AciI | CCGC | 5 cut(s) | 153, 170, 392, 492, 523 |
| AcoI | YGGCCR | 1 cut(s) | 462 |
| AfaI | GTAC | 1 cut(s) | 229 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 17, 187, 381 |
| AgsI | TTSAA | 1 cut(s) | 473 |
| AjnI | CCWGG | 4 cut(s) | 10, 67, 268, 335 |
| AluBI | AGCT | 5 cut(s) | 80, 311, 359, 422, 449 |
| AluI | AGCT | 5 cut(s) | 80, 311, 359, 422, 449 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 275 |
| AoxI | GGCC | 2 cut(s) | 19, 462 |
| ApeKI | GCWGC | 4 cut(s) | 99, 311, 359, 449 |
| AseI | ATTAAT | 1 cut(s) | 344 |
| AspLEI | GCGC | 1 cut(s) | 288 |
| AspS9I | GGNCC | 2 cut(s) | 20, 437 |
| AvaII | GGWCC | 1 cut(s) | 437 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 211, 244 |
| BalI | TGGCCA | 1 cut(s) | 464 |
| BanI | GGYRCC | 1 cut(s) | 42 |
| BbvI | GCAGC | 4 cut(s) | 111, 298, 346, 436 |
| BccI | CCATC | 1 cut(s) | 314 |
| BciT130I | CCWGG | 4 cut(s) | 12, 69, 270, 337 |
| BfaI | CTAG | 3 cut(s) | 356, 444, 537 |
| BfoI | RGCGCY | 1 cut(s) | 289 |
| BisI | GCNGC | 7 cut(s) | 100, 154, 312, 360, 450, 493, 523 |
| BlsI | GCNGC | 7 cut(s) | 101, 155, 313, 361, 451, 494, 524 |
| Bme1390I | CCNGG | 4 cut(s) | 12, 69, 270, 337 |
| Bme18I | GGWCC | 1 cut(s) | 437 |
| BmgT120I | GGNCC | 2 cut(s) | 20, 437 |
| BmiI | GGNNCC | 1 cut(s) | 44 |
| BmrFI | CCNGG | 4 cut(s) | 12, 69, 270, 337 |
| BmsI | GCATC | 1 cut(s) | 241 |
| BsaAI | YACGTR | 1 cut(s) | 227 |
| BsaJI | CCNNGG | 4 cut(s) | 94, 181, 269, 336 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 220, 250 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 17, 187, 381 |
| Bse3DI | GCAATG | 1 cut(s) | 465 |
| BseBI | CCWGG | 4 cut(s) | 12, 69, 270, 337 |
| BseDI | CCNNGG | 4 cut(s) | 94, 181, 269, 336 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 17, 187, 381 |
| BseMI | GCAATG | 1 cut(s) | 465 |
| BseMII | CTCAG | 2 cut(s) | 41, 128 |
| BseXI | GCAGC | 4 cut(s) | 111, 298, 346, 436 |
| BsgI | GTGCAG | 1 cut(s) | 345 |
| BshFI | GGCC | 2 cut(s) | 21, 464 |
| BshNI | GGYRCC | 1 cut(s) | 42 |
| BslFI | GGGAC | 1 cut(s) | 286 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 17, 187, 381 |
| BsmFI | GGGAC | 1 cut(s) | 286 |
| BsnI | GGCC | 2 cut(s) | 21, 464 |
| Bsp143I | GATC | 2 cut(s) | 61, 277 |
| Bsp19I | CCATGG | 1 cut(s) | 94 |
| BspACI | CCGC | 5 cut(s) | 153, 170, 392, 492, 523 |
| BspANI | GGCC | 2 cut(s) | 21, 464 |
| BspCNI | CTCAG | 2 cut(s) | 42, 129 |
| BspLI | GGNNCC | 1 cut(s) | 44 |
| BspT107I | GGYRCC | 1 cut(s) | 42 |
| BsrDI | GCAATG | 1 cut(s) | 465 |
| BssECI | CCNNGG | 4 cut(s) | 94, 181, 269, 336 |
| BssMI | GATC | 2 cut(s) | 61, 277 |
| BssT1I | CCWWGG | 2 cut(s) | 94, 181 |
| Bst2UI | CCWGG | 4 cut(s) | 12, 69, 270, 337 |
| Bst4CI | ACNGT | 1 cut(s) | 121 |
| BstBAI | YACGTR | 1 cut(s) | 227 |
| BstC8I | GCNNGC | 1 cut(s) | 170 |
| BstDEI | CTNAG | 3 cut(s) | 50, 137, 148 |
| BstDSI | CCRYGG | 1 cut(s) | 94 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 15 |
| BstH2I | RGCGCY | 1 cut(s) | 289 |
| BstHHI | GCGC | 1 cut(s) | 288 |
| BstKTI | GATC | 2 cut(s) | 64, 280 |
| BstMBI | GATC | 2 cut(s) | 61, 277 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 455 |
| BstNI | CCWGG | 4 cut(s) | 12, 69, 270, 337 |
| BstSCI | CCNGG | 4 cut(s) | 10, 67, 268, 335 |
| BstSNI | TACGTA | 1 cut(s) | 227 |
| BstV1I | GCAGC | 4 cut(s) | 111, 298, 346, 436 |
| BsuRI | GGCC | 2 cut(s) | 21, 464 |
| BtgI | CCRYGG | 1 cut(s) | 94 |
| BtgZI | GCGATG | 1 cut(s) | 117 |
| Cac8I | GCNNGC | 1 cut(s) | 170 |
| CaiI | CAGNNNCTG | 1 cut(s) | 275 |
| CfoI | GCGC | 1 cut(s) | 288 |
| Cfr13I | GGNCC | 2 cut(s) | 20, 437 |
| Csp6I | GTAC | 1 cut(s) | 228 |
| CviAII | CATG | 6 cut(s) | 95, 215, 256, 369, 381, 505 |
| CviQI | GTAC | 1 cut(s) | 228 |
| DdeI | CTNAG | 3 cut(s) | 50, 137, 148 |
| DpnI | GATC | 2 cut(s) | 63, 279 |
| DpnII | GATC | 2 cut(s) | 61, 277 |
| EaeI | YGGCCR | 1 cut(s) | 462 |
| Eco105I | TACGTA | 1 cut(s) | 227 |
| Eco130I | CCWWGG | 2 cut(s) | 94, 181 |
| Eco32I | GATATC | 2 cut(s) | 56, 115 |
| Eco47I | GGWCC | 1 cut(s) | 437 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 15 |
| EcoO109I | RGGNCCY | 2 cut(s) | 20, 437 |
| EcoRII | CCWGG | 4 cut(s) | 10, 67, 268, 335 |
| EcoRV | GATATC | 2 cut(s) | 56, 115 |
| EcoT14I | CCWWGG | 2 cut(s) | 94, 181 |
| ErhI | CCWWGG | 2 cut(s) | 94, 181 |
| FaeI | CATG | 6 cut(s) | 98, 218, 259, 372, 384, 508 |
| FaqI | GGGAC | 1 cut(s) | 286 |
| FatI | CATG | 6 cut(s) | 94, 214, 255, 368, 380, 504 |
| FauI | CCCGC | 2 cut(s) | 177, 385 |
| Fnu4HI | GCNGC | 7 cut(s) | 100, 154, 312, 360, 450, 493, 523 |
| Fsp4HI | GCNGC | 7 cut(s) | 100, 154, 312, 360, 450, 493, 523 |
| FspBI | CTAG | 3 cut(s) | 356, 444, 537 |
| GlaI | GCGC | 1 cut(s) | 287 |
| GluI | GCNGC | 7 cut(s) | 100, 154, 312, 360, 450, 493, 523 |
| HaeII | RGCGCY | 1 cut(s) | 289 |
| HaeIII | GGCC | 2 cut(s) | 21, 464 |
| HhaI | GCGC | 1 cut(s) | 288 |
| Hin1II | CATG | 6 cut(s) | 98, 218, 259, 372, 384, 508 |
| Hin6I | GCGC | 1 cut(s) | 286 |
| HinP1I | GCGC | 1 cut(s) | 286 |
| HincII | GTYRAC | 1 cut(s) | 220 |
| HindII | GTYRAC | 1 cut(s) | 220 |
| HindIII | AAGCTT | 1 cut(s) | 78 |
| HinfI | GANTC | 2 cut(s) | 176, 415 |
| Hpy166II | GTNNAC | 1 cut(s) | 220 |
| Hpy188I | TCNGA | 1 cut(s) | 51 |
| Hpy188III | TCNNGA | 3 cut(s) | 59, 74, 432 |
| Hpy8I | GTNNAC | 1 cut(s) | 220 |
| HpyAV | CCTTC | 1 cut(s) | 56 |
| HpyCH4III | ACNGT | 1 cut(s) | 121 |
| HpyCH4IV | ACGT | 1 cut(s) | 226 |
| HpyCH4V | TGCA | 3 cut(s) | 314, 362, 458 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 455 |
| HpyF3I | CTNAG | 3 cut(s) | 50, 137, 148 |
| HpySE526I | ACGT | 1 cut(s) | 226 |
| Hsp92II | CATG | 6 cut(s) | 98, 218, 259, 372, 384, 508 |
| HspAI | GCGC | 1 cut(s) | 286 |
| Kzo9I | GATC | 2 cut(s) | 61, 277 |
| LmnI | GCTCC | 1 cut(s) | 377 |
| LpnPI | CCDG | 9 cut(s) | 24, 54, 81, 186, 255, 282, 322, 349, 417 |
| Lsp1109I | GCAGC | 4 cut(s) | 111, 298, 346, 436 |
| LweI | GCATC | 1 cut(s) | 241 |
| MaeI | CTAG | 3 cut(s) | 356, 444, 537 |
| MaeII | ACGT | 1 cut(s) | 226 |
| MalI | GATC | 2 cut(s) | 63, 279 |
| MboI | GATC | 2 cut(s) | 61, 277 |
| MboII | GAAGA | 1 cut(s) | 56 |
| MlsI | TGGCCA | 1 cut(s) | 464 |
| MluCI | AATT | 1 cut(s) | 345 |
| MluNI | TGGCCA | 1 cut(s) | 464 |
| MnlI | CCTC | 5 cut(s) | 139, 199, 386, 428, 450 |
| Mox20I | TGGCCA | 1 cut(s) | 464 |
| MscI | TGGCCA | 1 cut(s) | 464 |
| MseI | TTAA | 4 cut(s) | 344, 348, 386, 402 |
| MslI | CAYNNNNRTG | 3 cut(s) | 249, 367, 503 |
| Msp20I | TGGCCA | 1 cut(s) | 464 |
| MspR9I | CCNGG | 4 cut(s) | 12, 69, 270, 337 |
| MvaI | CCWGG | 4 cut(s) | 12, 69, 270, 337 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 455 |
| NcoI | CCATGG | 1 cut(s) | 94 |
| NdeII | GATC | 2 cut(s) | 61, 277 |
| NlaIII | CATG | 6 cut(s) | 98, 218, 259, 372, 384, 508 |
| NlaIV | GGNNCC | 1 cut(s) | 44 |
| PacI | TTAATTAA | 1 cut(s) | 348 |
| PfeI | GAWTC | 2 cut(s) | 176, 415 |
| PflFI | GACNNNGTC | 1 cut(s) | 481 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 187 |
| PkrI | GCNGC | 7 cut(s) | 101, 155, 313, 361, 451, 494, 524 |
| Ppu21I | YACGTR | 1 cut(s) | 227 |
| PpuMI | RGGWCCY | 1 cut(s) | 437 |
| PshBI | ATTAAT | 1 cut(s) | 344 |
| Psp5II | RGGWCCY | 1 cut(s) | 437 |
| Psp6I | CCWGG | 4 cut(s) | 10, 67, 268, 335 |
| PspGI | CCWGG | 4 cut(s) | 10, 67, 268, 335 |
| PspN4I | GGNNCC | 1 cut(s) | 44 |
| PspPI | GGNCC | 2 cut(s) | 20, 437 |
| PspPPI | RGGWCCY | 1 cut(s) | 437 |
| PstNI | CAGNNNCTG | 1 cut(s) | 275 |
| PsyI | GACNNNGTC | 1 cut(s) | 481 |
| RsaI | GTAC | 1 cut(s) | 229 |
| RsaNI | GTAC | 1 cut(s) | 228 |
| RseI | CAYNNNNRTG | 3 cut(s) | 249, 367, 503 |
| SaqAI | TTAA | 4 cut(s) | 344, 348, 386, 402 |
| SatI | GCNGC | 7 cut(s) | 100, 154, 312, 360, 450, 493, 523 |
| Sau3AI | GATC | 2 cut(s) | 61, 277 |
| Sau96I | GGNCC | 2 cut(s) | 20, 437 |
| ScrFI | CCNGG | 4 cut(s) | 12, 69, 270, 337 |
| SfaNI | GCATC | 1 cut(s) | 241 |
| SinI | GGWCC | 1 cut(s) | 437 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 249, 367, 503 |
| SnaBI | TACGTA | 1 cut(s) | 227 |
| Sse9I | AATT | 1 cut(s) | 345 |
| SsiI | CCGC | 5 cut(s) | 153, 170, 392, 492, 523 |
| SspMI | CTAG | 3 cut(s) | 356, 444, 537 |
| StyD4I | CCNGG | 4 cut(s) | 10, 67, 268, 335 |
| StyI | CCWWGG | 2 cut(s) | 94, 181 |
| TaaI | ACNGT | 1 cut(s) | 121 |
| TaiI | ACGT | 1 cut(s) | 229 |
| TaqI | TCGA | 2 cut(s) | 60, 111 |
| TasI | AATT | 1 cut(s) | 345 |
| TauI | GCSGC | 3 cut(s) | 156, 495, 525 |
| TfiI | GAWTC | 2 cut(s) | 176, 415 |
| Tru1I | TTAA | 4 cut(s) | 344, 348, 386, 402 |
| Tru9I | TTAA | 4 cut(s) | 344, 348, 386, 402 |
| TseI | GCWGC | 4 cut(s) | 99, 311, 359, 449 |
| TspDTI | ATGAA | 3 cut(s) | 420, 428, 487 |
| Tth111I | GACNNNGTC | 1 cut(s) | 481 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 187 |
| VpaK11BI | GGWCC | 1 cut(s) | 437 |
| VspI | ATTAAT | 1 cut(s) | 344 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 15 |
| XspI | CTAG | 3 cut(s) | 356, 444, 537 |