ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 1099 |
| Acc36I | ACCTGC | 1 cut(s) | 366 |
| AccB1I | GGYRCC | 2 cut(s) | 321, 1017 |
| AccIII | TCCGGA | 1 cut(s) | 375 |
| AciI | CCGC | 2 cut(s) | 555, 945 |
| AclWI | GGATC | 2 cut(s) | 38, 867 |
| AcoI | YGGCCR | 2 cut(s) | 334, 838 |
| AcyI | GRCGYC | 4 cut(s) | 219, 774, 1018, 1096 |
| AdeI | CACNNNGTG | 1 cut(s) | 546 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 332, 794, 856 |
| AflII | CTTAAG | 1 cut(s) | 142 |
| AgeI | ACCGGT | 1 cut(s) | 691 |
| AgsI | TTSAA | 1 cut(s) | 74 |
| AjnI | CCWGG | 1 cut(s) | 776 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1160, 1192 |
| AluBI | AGCT | 7 cut(s) | 479, 527, 605, 970, 982, 1140, 1226 |
| AluI | AGCT | 7 cut(s) | 479, 527, 605, 970, 982, 1140, 1226 |
| Alw26I | GTCTC | 4 cut(s) | 101, 323, 697, 1155 |
| AlwI | GGATC | 2 cut(s) | 38, 867 |
| Aor13HI | TCCGGA | 1 cut(s) | 375 |
| AoxI | GGCC | 3 cut(s) | 334, 838, 957 |
| ApeKI | GCWGC | 5 cut(s) | 124, 127, 361, 524, 967 |
| AsiGI | ACCGGT | 1 cut(s) | 691 |
| AspLEI | GCGC | 1 cut(s) | 1020 |
| AspS9I | GGNCC | 3 cut(s) | 281, 355, 652 |
| AsuC2I | CCSGG | 1 cut(s) | 406 |
| AsuHPI | GGTGA | 2 cut(s) | 286, 809 |
| AvaII | GGWCC | 3 cut(s) | 281, 355, 652 |
| BaeGI | GKGCMC | 1 cut(s) | 324 |
| BalI | TGGCCA | 1 cut(s) | 840 |
| BanI | GGYRCC | 2 cut(s) | 321, 1017 |
| BauI | CACGAG | 2 cut(s) | 621, 953 |
| BbvI | GCAGC | 5 cut(s) | 136, 139, 348, 536, 979 |
| BccI | CCATC | 2 cut(s) | 233, 1127 |
| BceAI | ACGGC | 1 cut(s) | 666 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 626, 660 |
| BciT130I | CCWGG | 1 cut(s) | 778 |
| BclI | TGATCA | 2 cut(s) | 949, 1126 |
| BcnI | CCSGG | 1 cut(s) | 406 |
| BcoDI | GTCTC | 4 cut(s) | 101, 323, 697, 1155 |
| BfaI | CTAG | 2 cut(s) | 642, 1243 |
| BfmI | CTRYAG | 1 cut(s) | 817 |
| BfoI | RGCGCY | 1 cut(s) | 1021 |
| BfrI | CTTAAG | 1 cut(s) | 142 |
| BfuAI | ACCTGC | 1 cut(s) | 366 |
| BisI | GCNGC | 5 cut(s) | 125, 128, 362, 525, 968 |
| BlsI | GCNGC | 5 cut(s) | 126, 129, 363, 526, 969 |
| Bme1390I | CCNGG | 2 cut(s) | 406, 778 |
| Bme18I | GGWCC | 3 cut(s) | 281, 355, 652 |
| BmgT120I | GGNCC | 3 cut(s) | 281, 355, 652 |
| BmiI | GGNNCC | 6 cut(s) | 282, 323, 356, 380, 782, 1019 |
| BmrFI | CCNGG | 2 cut(s) | 406, 778 |
| BmsI | GCATC | 6 cut(s) | 256, 462, 569, 640, 646, 886 |
| BpmI | CTGGAG | 2 cut(s) | 549, 799 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1227 |
| BpuEI | CTTGAG | 2 cut(s) | 44, 1028 |
| BpuMI | CCSGG | 1 cut(s) | 406 |
| BsaHI | GRCGYC | 4 cut(s) | 219, 774, 1018, 1096 |
| BsaI | GGTCTC | 1 cut(s) | 323 |
| BsaJI | CCNNGG | 1 cut(s) | 405 |
| BsaWI | WCCGGW | 2 cut(s) | 375, 691 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 722, 752 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 332, 794, 856 |
| Bse118I | RCCGGY | 2 cut(s) | 332, 691 |
| BseAI | TCCGGA | 1 cut(s) | 375 |
| BseBI | CCWGG | 1 cut(s) | 778 |
| BseDI | CCNNGG | 1 cut(s) | 405 |
| BseGI | GGATG | 2 cut(s) | 637, 1009 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 332, 794, 856 |
| BseMII | CTCAG | 3 cut(s) | 115, 176, 1241 |
| BseRI | GAGGAG | 1 cut(s) | 743 |
| BseSI | GKGCMC | 1 cut(s) | 324 |
| BseXI | GCAGC | 5 cut(s) | 136, 139, 348, 536, 979 |
| BsgI | GTGCAG | 1 cut(s) | 100 |
| Bsh1285I | CGRYCG | 1 cut(s) | 650 |
| BshFI | GGCC | 3 cut(s) | 336, 840, 959 |
| BshNI | GGYRCC | 2 cut(s) | 321, 1017 |
| BshTI | ACCGGT | 1 cut(s) | 691 |
| BsiEI | CGRYCG | 1 cut(s) | 650 |
| BsiSI | CCGG | 5 cut(s) | 333, 376, 405, 484, 692 |
| BslFI | GGGAC | 5 cut(s) | 230, 368, 422, 480, 644 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 332, 794, 856 |
| BsmAI | GTCTC | 4 cut(s) | 101, 323, 697, 1155 |
| BsmBI | CGTCTC | 1 cut(s) | 697 |
| BsmFI | GGGAC | 5 cut(s) | 230, 368, 422, 480, 644 |
| BsnI | GGCC | 3 cut(s) | 336, 840, 959 |
| Bso31I | GGTCTC | 1 cut(s) | 323 |
| Bsp1286I | GDGCHC | 1 cut(s) | 324 |
| Bsp13I | TCCGGA | 1 cut(s) | 375 |
| Bsp143I | GATC | 6 cut(s) | 30, 250, 859, 949, 1025, 1126 |
| BspACI | CCGC | 2 cut(s) | 555, 945 |
| BspANI | GGCC | 3 cut(s) | 336, 840, 959 |
| BspCNI | CTCAG | 3 cut(s) | 114, 175, 1240 |
| BspEI | TCCGGA | 1 cut(s) | 375 |
| BspHI | TCATGA | 1 cut(s) | 745 |
| BspLI | GGNNCC | 6 cut(s) | 282, 323, 356, 380, 782, 1019 |
| BspMI | ACCTGC | 1 cut(s) | 366 |
| BspPI | GGATC | 2 cut(s) | 38, 867 |
| BspT107I | GGYRCC | 2 cut(s) | 321, 1017 |
| BspTI | CTTAAG | 1 cut(s) | 142 |
| BspTNI | GGTCTC | 1 cut(s) | 323 |
| BsrFI | RCCGGY | 2 cut(s) | 332, 691 |
| BssAI | RCCGGY | 2 cut(s) | 332, 691 |
| BssECI | CCNNGG | 1 cut(s) | 405 |
| BssMI | GATC | 6 cut(s) | 30, 250, 859, 949, 1025, 1126 |
| BssNI | GRCGYC | 4 cut(s) | 219, 774, 1018, 1096 |
| BssSI | CACGAG | 2 cut(s) | 621, 953 |
| Bst2BI | CACGAG | 2 cut(s) | 621, 953 |
| Bst2UI | CCWGG | 1 cut(s) | 778 |
| Bst4CI | ACNGT | 4 cut(s) | 23, 232, 868, 936 |
| BstACI | GRCGYC | 4 cut(s) | 219, 774, 1018, 1096 |
| BstAFI | CTTAAG | 1 cut(s) | 142 |
| BstC8I | GCNNGC | 7 cut(s) | 88, 452, 477, 489, 603, 785, 1142 |
| BstDEI | CTNAG | 5 cut(s) | 91, 101, 120, 162, 1227 |
| BstEII | GGTNACC | 1 cut(s) | 797 |
| BstF5I | GGATG | 2 cut(s) | 637, 1009 |
| BstH2I | RGCGCY | 1 cut(s) | 1021 |
| BstHHI | GCGC | 1 cut(s) | 1020 |
| BstKTI | GATC | 6 cut(s) | 33, 253, 862, 952, 1028, 1129 |
| BstMAI | GTCTC | 4 cut(s) | 101, 323, 697, 1155 |
| BstMBI | GATC | 6 cut(s) | 30, 250, 859, 949, 1025, 1126 |
| BstMCI | CGRYCG | 1 cut(s) | 650 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 136, 593, 602 |
| BstNI | CCWGG | 1 cut(s) | 778 |
| BstPI | GGTNACC | 1 cut(s) | 797 |
| BstSCI | CCNGG | 2 cut(s) | 404, 776 |
| BstSFI | CTRYAG | 1 cut(s) | 817 |
| BstSLI | GKGCMC | 1 cut(s) | 324 |
| BstV1I | GCAGC | 5 cut(s) | 136, 139, 348, 536, 979 |
| BsuRI | GGCC | 3 cut(s) | 336, 840, 959 |
| BtsCI | GGATG | 2 cut(s) | 637, 1009 |
| BtsI | GCAGTG | 2 cut(s) | 112, 582 |
| BtsIMutI | CAGTG | 3 cut(s) | 112, 582, 873 |
| BveI | ACCTGC | 1 cut(s) | 366 |
| Cac8I | GCNNGC | 7 cut(s) | 88, 452, 477, 489, 603, 785, 1142 |
| CciI | TCATGA | 1 cut(s) | 745 |
| CfoI | GCGC | 1 cut(s) | 1020 |
| Cfr10I | RCCGGY | 2 cut(s) | 332, 691 |
| Cfr13I | GGNCC | 3 cut(s) | 281, 355, 652 |
| CseI | GACGC | 2 cut(s) | 227, 782 |
| CspAI | ACCGGT | 1 cut(s) | 691 |
| CviAII | CATG | 4 cut(s) | 656, 698, 746, 1057 |
| DdeI | CTNAG | 5 cut(s) | 91, 101, 120, 162, 1227 |
| DinI | GGCGCC | 1 cut(s) | 1019 |
| DpnI | GATC | 6 cut(s) | 32, 252, 861, 951, 1027, 1128 |
| DpnII | GATC | 6 cut(s) | 30, 250, 859, 949, 1025, 1126 |
| DraIII | CACNNNGTG | 1 cut(s) | 546 |
| EaeI | YGGCCR | 2 cut(s) | 334, 838 |
| Eco31I | GGTCTC | 1 cut(s) | 323 |
| Eco47I | GGWCC | 3 cut(s) | 281, 355, 652 |
| Eco91I | GGTNACC | 1 cut(s) | 797 |
| EcoO109I | RGGNCCY | 1 cut(s) | 355 |
| EcoO65I | GGTNACC | 1 cut(s) | 797 |
| EcoRII | CCWGG | 1 cut(s) | 776 |
| EgeI | GGCGCC | 1 cut(s) | 1019 |
| EheI | GGCGCC | 1 cut(s) | 1019 |
| Esp3I | CGTCTC | 1 cut(s) | 697 |
| FaeI | CATG | 4 cut(s) | 659, 701, 749, 1060 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 74, 106 |
| FaqI | GGGAC | 5 cut(s) | 230, 368, 422, 480, 644 |
| FatI | CATG | 4 cut(s) | 655, 697, 745, 1056 |
| FauI | CCCGC | 1 cut(s) | 952 |
| FbaI | TGATCA | 2 cut(s) | 949, 1126 |
| Fnu4HI | GCNGC | 5 cut(s) | 125, 128, 362, 525, 968 |
| FokI | GGATG | 2 cut(s) | 624, 1016 |
| Fsp4HI | GCNGC | 5 cut(s) | 125, 128, 362, 525, 968 |
| FspBI | CTAG | 2 cut(s) | 642, 1243 |
| GlaI | GCGC | 1 cut(s) | 1019 |
| GluI | GCNGC | 5 cut(s) | 125, 128, 362, 525, 968 |
| GsuI | CTGGAG | 2 cut(s) | 549, 799 |
| HaeII | RGCGCY | 1 cut(s) | 1021 |
| HaeIII | GGCC | 3 cut(s) | 336, 840, 959 |
| HapII | CCGG | 5 cut(s) | 333, 376, 405, 484, 692 |
| HgaI | GACGC | 2 cut(s) | 227, 782 |
| HhaI | GCGC | 1 cut(s) | 1020 |
| Hin1I | GRCGYC | 4 cut(s) | 219, 774, 1018, 1096 |
| Hin1II | CATG | 4 cut(s) | 659, 701, 749, 1060 |
| Hin6I | GCGC | 1 cut(s) | 1018 |
| HinP1I | GCGC | 1 cut(s) | 1018 |
| HindIII | AAGCTT | 1 cut(s) | 477 |
| HinfI | GANTC | 7 cut(s) | 70, 109, 156, 460, 551, 877, 1148 |
| HpaII | CCGG | 5 cut(s) | 333, 376, 405, 484, 692 |
| HphI | GGTGA | 2 cut(s) | 286, 809 |
| Hpy166II | GTNNAC | 1 cut(s) | 187 |
| Hpy188I | TCNGA | 5 cut(s) | 165, 242, 652, 1101, 1216 |
| Hpy8I | GTNNAC | 1 cut(s) | 187 |
| Hpy99I | CGWCG | 2 cut(s) | 711, 1098 |
| HpyAV | CCTTC | 5 cut(s) | 237, 271, 705, 743, 1221 |
| HpyCH4III | ACNGT | 4 cut(s) | 23, 232, 868, 936 |
| HpyCH4IV | ACGT | 2 cut(s) | 340, 1096 |
| HpyCH4V | TGCA | 9 cut(s) | 117, 475, 582, 631, 637, 697, 758, 899, 967 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 136, 593, 602 |
| HpyF3I | CTNAG | 5 cut(s) | 91, 101, 120, 162, 1227 |
| HpySE526I | ACGT | 2 cut(s) | 340, 1096 |
| Hsp92I | GRCGYC | 4 cut(s) | 219, 774, 1018, 1096 |
| Hsp92II | CATG | 4 cut(s) | 659, 701, 749, 1060 |
| HspAI | GCGC | 1 cut(s) | 1018 |
| KasI | GGCGCC | 1 cut(s) | 1017 |
| Kpn2I | TCCGGA | 1 cut(s) | 375 |
| Ksp22I | TGATCA | 2 cut(s) | 949, 1126 |
| Kzo9I | GATC | 6 cut(s) | 30, 250, 859, 949, 1025, 1126 |
| LmnI | GCTCC | 1 cut(s) | 780 |
| Lsp1109I | GCAGC | 5 cut(s) | 136, 139, 348, 536, 979 |
| LweI | GCATC | 6 cut(s) | 256, 462, 569, 640, 646, 886 |
| MaeI | CTAG | 2 cut(s) | 642, 1243 |
| MaeII | ACGT | 2 cut(s) | 340, 1096 |
| MaeIII | GTNAC | 2 cut(s) | 797, 924 |
| MalI | GATC | 6 cut(s) | 32, 252, 861, 951, 1027, 1128 |
| MboI | GATC | 6 cut(s) | 30, 250, 859, 949, 1025, 1126 |
| MboII | GAAGA | 3 cut(s) | 524, 582, 1114 |
| MhlI | GDGCHC | 1 cut(s) | 324 |
| MlsI | TGGCCA | 1 cut(s) | 840 |
| MluCI | AATT | 2 cut(s) | 499, 825 |
| MluNI | TGGCCA | 1 cut(s) | 840 |
| Mly113I | GGCGCC | 1 cut(s) | 1018 |
| MlyI | GAGTC | 4 cut(s) | 103, 150, 469, 1157 |
| MmeI | TCCRAC | 4 cut(s) | 133, 552, 630, 651 |
| Mox20I | TGGCCA | 1 cut(s) | 840 |
| MroI | TCCGGA | 1 cut(s) | 375 |
| MscI | TGGCCA | 1 cut(s) | 840 |
| MseI | TTAA | 4 cut(s) | 143, 414, 828, 1113 |
| Msp20I | TGGCCA | 1 cut(s) | 840 |
| MspA1I | CMGCKG | 2 cut(s) | 527, 947 |
| MspCI | CTTAAG | 1 cut(s) | 142 |
| MspI | CCGG | 5 cut(s) | 333, 376, 405, 484, 692 |
| MspR9I | CCNGG | 2 cut(s) | 406, 778 |
| MvaI | CCWGG | 1 cut(s) | 778 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 136, 593, 602 |
| NarI | GGCGCC | 1 cut(s) | 1018 |
| NciI | CCSGG | 1 cut(s) | 406 |
| NdeII | GATC | 6 cut(s) | 30, 250, 859, 949, 1025, 1126 |
| NlaIII | CATG | 4 cut(s) | 659, 701, 749, 1060 |
| NlaIV | GGNNCC | 6 cut(s) | 282, 323, 356, 380, 782, 1019 |
| NmuCI | GTSAC | 1 cut(s) | 797 |
| PagI | TCATGA | 1 cut(s) | 745 |
| PfeI | GAWTC | 3 cut(s) | 70, 551, 877 |
| PflFI | GACNNNGTC | 1 cut(s) | 656 |
| PinAI | ACCGGT | 1 cut(s) | 691 |
| PkrI | GCNGC | 5 cut(s) | 126, 129, 363, 526, 969 |
| PleI | GAGTC | 4 cut(s) | 103, 150, 468, 1156 |
| PluTI | GGCGCC | 1 cut(s) | 1021 |
| PpsI | GAGTC | 4 cut(s) | 103, 150, 468, 1156 |
| PpuMI | RGGWCCY | 1 cut(s) | 355 |
| Psp5II | RGGWCCY | 1 cut(s) | 355 |
| Psp6I | CCWGG | 1 cut(s) | 776 |
| PspEI | GGTNACC | 1 cut(s) | 797 |
| PspGI | CCWGG | 1 cut(s) | 776 |
| PspN4I | GGNNCC | 6 cut(s) | 282, 323, 356, 380, 782, 1019 |
| PspPI | GGNCC | 3 cut(s) | 281, 355, 652 |
| PspPPI | RGGWCCY | 1 cut(s) | 355 |
| PsyI | GACNNNGTC | 1 cut(s) | 656 |
| PvuII | CAGCTG | 1 cut(s) | 527 |
| SaqAI | TTAA | 4 cut(s) | 143, 414, 828, 1113 |
| SatI | GCNGC | 5 cut(s) | 125, 128, 362, 525, 968 |
| Sau3AI | GATC | 6 cut(s) | 30, 250, 859, 949, 1025, 1126 |
| Sau96I | GGNCC | 3 cut(s) | 281, 355, 652 |
| SchI | GAGTC | 4 cut(s) | 103, 150, 469, 1157 |
| ScrFI | CCNGG | 2 cut(s) | 406, 778 |
| SduI | GDGCHC | 1 cut(s) | 324 |
| SfaNI | GCATC | 6 cut(s) | 256, 462, 569, 640, 646, 886 |
| SfcI | CTRYAG | 1 cut(s) | 817 |
| SfoI | GGCGCC | 1 cut(s) | 1019 |
| SgrAI | CRCCGGYG | 1 cut(s) | 691 |
| SinI | GGWCC | 3 cut(s) | 281, 355, 652 |
| SmlI | CTYRAG | 3 cut(s) | 59, 142, 1043 |
| SmoI | CTYRAG | 3 cut(s) | 59, 142, 1043 |
| Sse9I | AATT | 2 cut(s) | 499, 825 |
| SsiI | CCGC | 2 cut(s) | 555, 945 |
| SspDI | GGCGCC | 1 cut(s) | 1017 |
| SspMI | CTAG | 2 cut(s) | 642, 1243 |
| StyD4I | CCNGG | 2 cut(s) | 404, 776 |
| TaaI | ACNGT | 4 cut(s) | 23, 232, 868, 936 |
| TaiI | ACGT | 2 cut(s) | 343, 1099 |
| TaqI | TCGA | 5 cut(s) | 49, 721, 862, 894, 1093 |
| TaqII | GACCGA | 1 cut(s) | 636 |
| TasI | AATT | 2 cut(s) | 499, 825 |
| TfiI | GAWTC | 3 cut(s) | 70, 551, 877 |
| Tru1I | TTAA | 4 cut(s) | 143, 414, 828, 1113 |
| Tru9I | TTAA | 4 cut(s) | 143, 414, 828, 1113 |
| TscAI | CASTG | 3 cut(s) | 119, 589, 873 |
| TseFI | GTSAC | 1 cut(s) | 797 |
| TseI | GCWGC | 5 cut(s) | 124, 127, 361, 524, 967 |
| Tsp45I | GTSAC | 1 cut(s) | 797 |
| TspDTI | ATGAA | 6 cut(s) | 17, 250, 762, 1020, 1064, 1073 |
| TspGWI | ACGGA | 2 cut(s) | 472, 1235 |
| TspRI | CASTG | 3 cut(s) | 119, 589, 873 |
| Tth111I | GACNNNGTC | 1 cut(s) | 656 |
| Vha464I | CTTAAG | 1 cut(s) | 142 |
| VpaK11BI | GGWCC | 3 cut(s) | 281, 355, 652 |
| XspI | CTAG | 2 cut(s) | 642, 1243 |
| ZraI | GACGTC | 1 cut(s) | 1097 |