ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| LRR_8 | PF13855 | 297 - 356 | 2.1e-09 | Leucine rich repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 750 |
| AcsI | RAATTY | 5 cut(s) | 67, 176, 722, 845, 1065 |
| AfaI | GTAC | 2 cut(s) | 653, 1195 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 150, 1165 |
| AgeI | ACCGGT | 1 cut(s) | 617 |
| AhlI | ACTAGT | 1 cut(s) | 74 |
| Alw21I | GWGCWC | 1 cut(s) | 924 |
| AoxI | GGCC | 2 cut(s) | 505, 928 |
| ApoI | RAATTY | 5 cut(s) | 67, 176, 722, 845, 1065 |
| AseI | ATTAAT | 2 cut(s) | 495, 678 |
| AsiGI | ACCGGT | 1 cut(s) | 617 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 474 |
| AspS9I | GGNCC | 1 cut(s) | 1177 |
| AsuHPI | GGTGA | 4 cut(s) | 312, 602, 607, 851 |
| AvaII | GGWCC | 1 cut(s) | 1177 |
| BanII | GRGCYC | 1 cut(s) | 924 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 681, 713 |
| BbsI | GAAGAC | 2 cut(s) | 36, 122 |
| Bbv12I | GWGCWC | 1 cut(s) | 924 |
| BccI | CCATC | 4 cut(s) | 124, 493, 872, 1168 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 212, 246 |
| BcuI | ACTAGT | 1 cut(s) | 74 |
| BfaI | CTAG | 5 cut(s) | 75, 203, 686, 828, 965 |
| BfmI | CTRYAG | 1 cut(s) | 1125 |
| BglII | AGATCT | 1 cut(s) | 969 |
| BlpI | GCTNAGC | 1 cut(s) | 671 |
| Bme18I | GGWCC | 1 cut(s) | 1177 |
| BmgT120I | GGNCC | 1 cut(s) | 1177 |
| BmiI | GGNNCC | 1 cut(s) | 331 |
| BmsI | GCATC | 2 cut(s) | 426, 780 |
| BpiI | GAAGAC | 2 cut(s) | 36, 122 |
| BpmI | CTGGAG | 2 cut(s) | 553, 1199 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 671 |
| BpuEI | CTTGAG | 4 cut(s) | 180, 941, 1001, 1116 |
| BsaJI | CCNNGG | 2 cut(s) | 1031, 1173 |
| BsaWI | WCCGGW | 1 cut(s) | 617 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 432, 462 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 150, 1165 |
| Bse118I | RCCGGY | 1 cut(s) | 617 |
| Bse1I | ACTGG | 2 cut(s) | 187, 403 |
| Bse3DI | GCAATG | 2 cut(s) | 783, 793 |
| BseDI | CCNNGG | 2 cut(s) | 1031, 1173 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 150, 1165 |
| BseMI | GCAATG | 2 cut(s) | 783, 793 |
| BseMII | CTCAG | 4 cut(s) | 117, 546, 598, 662 |
| BseNI | ACTGG | 2 cut(s) | 187, 403 |
| BsgI | GTGCAG | 1 cut(s) | 1210 |
| BshFI | GGCC | 2 cut(s) | 507, 930 |
| BshTI | ACCGGT | 1 cut(s) | 617 |
| BsiHKAI | GWGCWC | 1 cut(s) | 924 |
| BsiSI | CCGG | 2 cut(s) | 618, 851 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 150, 1165 |
| BsmI | GAATGC | 1 cut(s) | 1124 |
| BsnI | GGCC | 2 cut(s) | 507, 930 |
| Bsp1286I | GDGCHC | 1 cut(s) | 924 |
| Bsp143I | GATC | 4 cut(s) | 595, 682, 856, 969 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 671 |
| BspANI | GGCC | 2 cut(s) | 507, 930 |
| BspCNI | CTCAG | 4 cut(s) | 116, 547, 597, 663 |
| BspLI | GGNNCC | 1 cut(s) | 331 |
| BsrDI | GCAATG | 2 cut(s) | 783, 793 |
| BsrFI | RCCGGY | 1 cut(s) | 617 |
| BsrI | ACTGG | 2 cut(s) | 187, 403 |
| BssAI | RCCGGY | 1 cut(s) | 617 |
| BssECI | CCNNGG | 2 cut(s) | 1031, 1173 |
| BssMI | GATC | 4 cut(s) | 595, 682, 856, 969 |
| BssT1I | CCWWGG | 2 cut(s) | 1031, 1173 |
| Bst6I | CTCTTC | 1 cut(s) | 1032 |
| BstC8I | GCNNGC | 3 cut(s) | 225, 404, 425 |
| BstDEI | CTNAG | 5 cut(s) | 103, 555, 584, 671, 951 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 148 |
| BstKTI | GATC | 4 cut(s) | 598, 685, 859, 972 |
| BstMBI | GATC | 4 cut(s) | 595, 682, 856, 969 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 233, 961 |
| BstNSI | RCATGY | 1 cut(s) | 406 |
| BstSFI | CTRYAG | 1 cut(s) | 1125 |
| BstV2I | GAAGAC | 2 cut(s) | 36, 122 |
| BstX2I | RGATCY | 1 cut(s) | 969 |
| BstYI | RGATCY | 1 cut(s) | 969 |
| BsuRI | GGCC | 2 cut(s) | 507, 930 |
| Cac8I | GCNNGC | 3 cut(s) | 225, 404, 425 |
| Cfr10I | RCCGGY | 1 cut(s) | 617 |
| Cfr13I | GGNCC | 1 cut(s) | 1177 |
| Csp6I | GTAC | 2 cut(s) | 652, 1194 |
| CspAI | ACCGGT | 1 cut(s) | 617 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 274, 309 |
| CviAII | CATG | 3 cut(s) | 29, 403, 865 |
| CviQI | GTAC | 2 cut(s) | 652, 1194 |
| DdeI | CTNAG | 5 cut(s) | 103, 555, 584, 671, 951 |
| DpnI | GATC | 4 cut(s) | 597, 684, 858, 971 |
| DpnII | GATC | 4 cut(s) | 595, 682, 856, 969 |
| Eam1104I | CTCTTC | 1 cut(s) | 1032 |
| EarI | CTCTTC | 1 cut(s) | 1032 |
| Ecl136II | GAGCTC | 1 cut(s) | 922 |
| Eco130I | CCWWGG | 2 cut(s) | 1031, 1173 |
| Eco147I | AGGCCT | 1 cut(s) | 507 |
| Eco24I | GRGCYC | 1 cut(s) | 924 |
| Eco32I | GATATC | 1 cut(s) | 274 |
| Eco47I | GGWCC | 1 cut(s) | 1177 |
| Eco53kI | GAGCTC | 1 cut(s) | 922 |
| EcoICRI | GAGCTC | 1 cut(s) | 922 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 148 |
| EcoRV | GATATC | 1 cut(s) | 274 |
| EcoT14I | CCWWGG | 2 cut(s) | 1031, 1173 |
| EcoT22I | ATGCAT | 1 cut(s) | 795 |
| EcoT38I | GRGCYC | 1 cut(s) | 924 |
| ErhI | CCWWGG | 2 cut(s) | 1031, 1173 |
| FaeI | CATG | 3 cut(s) | 32, 406, 868 |
| FatI | CATG | 3 cut(s) | 28, 402, 864 |
| FauNDI | CATATG | 1 cut(s) | 325 |
| FriOI | GRGCYC | 1 cut(s) | 924 |
| FspBI | CTAG | 5 cut(s) | 75, 203, 686, 828, 965 |
| GsuI | CTGGAG | 2 cut(s) | 553, 1199 |
| HaeIII | GGCC | 2 cut(s) | 507, 930 |
| HapII | CCGG | 2 cut(s) | 618, 851 |
| Hin1II | CATG | 3 cut(s) | 32, 406, 868 |
| HindIII | AAGCTT | 2 cut(s) | 60, 225 |
| HinfI | GANTC | 6 cut(s) | 528, 607, 882, 976, 993, 1169 |
| HpaII | CCGG | 2 cut(s) | 618, 851 |
| HphI | GGTGA | 4 cut(s) | 312, 602, 607, 851 |
| Hpy166II | GTNNAC | 2 cut(s) | 590, 1097 |
| Hpy188I | TCNGA | 4 cut(s) | 268, 556, 1083, 1117 |
| Hpy188III | TCNNGA | 7 cut(s) | 467, 570, 686, 958, 973, 980, 1150 |
| Hpy8I | GTNNAC | 2 cut(s) | 590, 1097 |
| HpyAV | CCTTC | 5 cut(s) | 461, 464, 536, 683, 742 |
| HpyCH4V | TGCA | 7 cut(s) | 35, 223, 501, 648, 793, 798, 1191 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 233, 961 |
| HpyF3I | CTNAG | 5 cut(s) | 103, 555, 584, 671, 951 |
| Hsp92II | CATG | 3 cut(s) | 32, 406, 868 |
| Kzo9I | GATC | 4 cut(s) | 595, 682, 856, 969 |
| LmnI | GCTCC | 3 cut(s) | 329, 411, 453 |
| LweI | GCATC | 2 cut(s) | 426, 780 |
| MaeI | CTAG | 5 cut(s) | 75, 203, 686, 828, 965 |
| MaeIII | GTNAC | 1 cut(s) | 239 |
| MalI | GATC | 4 cut(s) | 597, 684, 858, 971 |
| MboI | GATC | 4 cut(s) | 595, 682, 856, 969 |
| MboII | GAAGA | 8 cut(s) | 36, 43, 122, 129, 308, 616, 793, 1019 |
| MflI | RGATCY | 1 cut(s) | 969 |
| MhlI | GDGCHC | 1 cut(s) | 924 |
| MmeI | TCCRAC | 2 cut(s) | 79, 1204 |
| MnlI | CCTC | 8 cut(s) | 321, 365, 374, 389, 623, 746, 835, 1223 |
| Mph1103I | ATGCAT | 1 cut(s) | 795 |
| MroXI | GAANNNNTTC | 1 cut(s) | 474 |
| MseI | TTAA | 6 cut(s) | 368, 495, 561, 576, 678, 987 |
| MslI | CAYNNNNRTG | 1 cut(s) | 27 |
| MspI | CCGG | 2 cut(s) | 618, 851 |
| Mva1269I | GAATGC | 1 cut(s) | 1124 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 233, 961 |
| NdeI | CATATG | 1 cut(s) | 325 |
| NdeII | GATC | 4 cut(s) | 595, 682, 856, 969 |
| NlaIII | CATG | 3 cut(s) | 32, 406, 868 |
| NlaIV | GGNNCC | 1 cut(s) | 331 |
| NsiI | ATGCAT | 1 cut(s) | 795 |
| NspI | RCATGY | 1 cut(s) | 406 |
| PaeI | GCATGC | 1 cut(s) | 406 |
| PceI | AGGCCT | 1 cut(s) | 507 |
| PctI | GAATGC | 1 cut(s) | 1124 |
| PdmI | GAANNNNTTC | 1 cut(s) | 474 |
| PfeI | GAWTC | 6 cut(s) | 528, 607, 882, 976, 993, 1169 |
| PinAI | ACCGGT | 1 cut(s) | 617 |
| PshBI | ATTAAT | 2 cut(s) | 495, 678 |
| PsiI | TTATAA | 1 cut(s) | 750 |
| Psp124BI | GAGCTC | 1 cut(s) | 924 |
| PspN4I | GGNNCC | 1 cut(s) | 331 |
| PspPI | GGNCC | 1 cut(s) | 1177 |
| PsuI | RGATCY | 1 cut(s) | 969 |
| RsaI | GTAC | 2 cut(s) | 653, 1195 |
| RsaNI | GTAC | 2 cut(s) | 652, 1194 |
| RseI | CAYNNNNRTG | 1 cut(s) | 27 |
| SacI | GAGCTC | 1 cut(s) | 924 |
| SaqAI | TTAA | 6 cut(s) | 368, 495, 561, 576, 678, 987 |
| Sau3AI | GATC | 4 cut(s) | 595, 682, 856, 969 |
| Sau96I | GGNCC | 1 cut(s) | 1177 |
| SduI | GDGCHC | 1 cut(s) | 924 |
| SfaNI | GCATC | 2 cut(s) | 426, 780 |
| SfcI | CTRYAG | 1 cut(s) | 1125 |
| SinI | GGWCC | 1 cut(s) | 1177 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 27 |
| SmlI | CTYRAG | 4 cut(s) | 195, 956, 980, 1131 |
| SmoI | CTYRAG | 4 cut(s) | 195, 956, 980, 1131 |
| SpeI | ACTAGT | 1 cut(s) | 74 |
| SphI | GCATGC | 1 cut(s) | 406 |
| SseBI | AGGCCT | 1 cut(s) | 507 |
| SspI | AATATT | 1 cut(s) | 190 |
| SspMI | CTAG | 5 cut(s) | 75, 203, 686, 828, 965 |
| SstI | GAGCTC | 1 cut(s) | 924 |
| StuI | AGGCCT | 1 cut(s) | 507 |
| StyI | CCWWGG | 2 cut(s) | 1031, 1173 |
| TatI | WGTACW | 1 cut(s) | 1193 |
| TfiI | GAWTC | 6 cut(s) | 528, 607, 882, 976, 993, 1169 |
| Tru1I | TTAA | 6 cut(s) | 368, 495, 561, 576, 678, 987 |
| Tru9I | TTAA | 6 cut(s) | 368, 495, 561, 576, 678, 987 |
| TspDTI | ATGAA | 6 cut(s) | 122, 156, 189, 794, 813, 1155 |
| TspGWI | ACGGA | 1 cut(s) | 30 |
| VpaK11BI | GGWCC | 1 cut(s) | 1177 |
| VspI | ATTAAT | 2 cut(s) | 495, 678 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 148 |
| XapI | RAATTY | 5 cut(s) | 67, 176, 722, 845, 1065 |
| XbaI | TCTAGA | 1 cut(s) | 685 |
| XceI | RCATGY | 1 cut(s) | 406 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1070 |
| XmnI | GAANNNNTTC | 1 cut(s) | 474 |
| XspI | CTAG | 5 cut(s) | 75, 203, 686, 828, 965 |
| Zsp2I | ATGCAT | 1 cut(s) | 795 |