ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 58 |
| AciI | CCGC | 3 cut(s) | 277, 284, 353 |
| AclWI | GGATC | 5 cut(s) | 102, 191, 332, 409, 422 |
| AcuI | CTGAAG | 2 cut(s) | 230, 549 |
| AfaI | GTAC | 1 cut(s) | 43 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 208, 283 |
| AgsI | TTSAA | 2 cut(s) | 125, 442 |
| AjiI | CACGTC | 1 cut(s) | 494 |
| AluBI | AGCT | 1 cut(s) | 431 |
| AluI | AGCT | 1 cut(s) | 431 |
| Alw21I | GWGCWC | 1 cut(s) | 499 |
| Alw26I | GTCTC | 1 cut(s) | 281 |
| AlwI | GGATC | 5 cut(s) | 102, 191, 332, 409, 422 |
| AoxI | GGCC | 1 cut(s) | 33 |
| ApeKI | GCWGC | 2 cut(s) | 64, 256 |
| AspS9I | GGNCC | 2 cut(s) | 34, 423 |
| AsuHPI | GGTGA | 1 cut(s) | 206 |
| AvaII | GGWCC | 1 cut(s) | 423 |
| BamHI | GGATCC | 1 cut(s) | 414 |
| BbsI | GAAGAC | 1 cut(s) | 474 |
| Bbv12I | GWGCWC | 1 cut(s) | 499 |
| BbvI | GCAGC | 2 cut(s) | 51, 268 |
| BcoDI | GTCTC | 1 cut(s) | 281 |
| BfaI | CTAG | 1 cut(s) | 12 |
| BisI | GCNGC | 2 cut(s) | 65, 257 |
| BlsI | GCNGC | 2 cut(s) | 66, 258 |
| Bme18I | GGWCC | 1 cut(s) | 423 |
| BmgBI | CACGTC | 1 cut(s) | 494 |
| BmgT120I | GGNCC | 2 cut(s) | 34, 423 |
| BmiI | GGNNCC | 2 cut(s) | 36, 416 |
| BmsI | GCATC | 1 cut(s) | 146 |
| BpiI | GAAGAC | 1 cut(s) | 474 |
| BpmI | CTGGAG | 1 cut(s) | 89 |
| BpuEI | CTTGAG | 2 cut(s) | 381, 461 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 208, 283 |
| BseGI | GGATG | 2 cut(s) | 44, 137 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 208, 283 |
| BseMII | CTCAG | 1 cut(s) | 217 |
| BseXI | GCAGC | 2 cut(s) | 51, 268 |
| BshFI | GGCC | 1 cut(s) | 35 |
| BsiHKAI | GWGCWC | 1 cut(s) | 499 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 208, 283 |
| BsmAI | GTCTC | 1 cut(s) | 281 |
| BsmBI | CGTCTC | 1 cut(s) | 281 |
| BsnI | GGCC | 1 cut(s) | 35 |
| Bsp1286I | GDGCHC | 1 cut(s) | 499 |
| Bsp143I | GATC | 6 cut(s) | 49, 107, 196, 337, 414, 451 |
| BspACI | CCGC | 3 cut(s) | 277, 284, 353 |
| BspANI | GGCC | 1 cut(s) | 35 |
| BspCNI | CTCAG | 1 cut(s) | 216 |
| BspLI | GGNNCC | 2 cut(s) | 36, 416 |
| BspPI | GGATC | 5 cut(s) | 102, 191, 332, 409, 422 |
| BspQI | GCTCTTC | 1 cut(s) | 11 |
| BssMI | GATC | 6 cut(s) | 49, 107, 196, 337, 414, 451 |
| Bst6I | CTCTTC | 1 cut(s) | 11 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 143 |
| BstC8I | GCNNGC | 1 cut(s) | 308 |
| BstDEI | CTNAG | 2 cut(s) | 203, 546 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 206 |
| BstF5I | GGATG | 2 cut(s) | 44, 137 |
| BstKTI | GATC | 6 cut(s) | 52, 110, 199, 340, 417, 454 |
| BstMAI | GTCTC | 1 cut(s) | 281 |
| BstMBI | GATC | 6 cut(s) | 49, 107, 196, 337, 414, 451 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 143, 503 |
| BstV1I | GCAGC | 2 cut(s) | 51, 268 |
| BstV2I | GAAGAC | 1 cut(s) | 474 |
| BstX2I | RGATCY | 1 cut(s) | 414 |
| BstYI | RGATCY | 1 cut(s) | 414 |
| BsuRI | GGCC | 1 cut(s) | 35 |
| BtrI | CACGTC | 1 cut(s) | 494 |
| BtsCI | GGATG | 2 cut(s) | 44, 137 |
| BtsI | GCAGTG | 1 cut(s) | 186 |
| BtsIMutI | CAGTG | 1 cut(s) | 186 |
| Cac8I | GCNNGC | 1 cut(s) | 308 |
| Cfr13I | GGNCC | 2 cut(s) | 34, 423 |
| CseI | GACGC | 1 cut(s) | 83 |
| Csp6I | GTAC | 1 cut(s) | 42 |
| CviAII | CATG | 2 cut(s) | 143, 252 |
| CviJI | RGCY | 6 cut(s) | 35, 212, 310, 327, 365, 431 |
| CviKI_1 | RGCY | 6 cut(s) | 35, 212, 310, 327, 365, 431 |
| CviQI | GTAC | 1 cut(s) | 42 |
| DdeI | CTNAG | 2 cut(s) | 203, 546 |
| DpnI | GATC | 6 cut(s) | 51, 109, 198, 339, 416, 453 |
| DpnII | GATC | 6 cut(s) | 49, 107, 196, 337, 414, 451 |
| Eam1104I | CTCTTC | 1 cut(s) | 11 |
| EarI | CTCTTC | 1 cut(s) | 11 |
| EciI | GGCGGA | 1 cut(s) | 299 |
| Eco47I | GGWCC | 1 cut(s) | 423 |
| Eco57I | CTGAAG | 2 cut(s) | 230, 549 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 206 |
| EcoT22I | ATGCAT | 1 cut(s) | 348 |
| Esp3I | CGTCTC | 1 cut(s) | 281 |
| FaeI | CATG | 2 cut(s) | 146, 255 |
| FaiI | YATR | 9 cut(s) | 54, 76, 144, 253, 272, 344, 348, 522, 538 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 375, 407 |
| FatI | CATG | 2 cut(s) | 142, 251 |
| FblI | GTMKAC | 1 cut(s) | 58 |
| Fnu4HI | GCNGC | 2 cut(s) | 65, 257 |
| FokI | GGATG | 2 cut(s) | 31, 124 |
| Fsp4HI | GCNGC | 2 cut(s) | 65, 257 |
| FspBI | CTAG | 1 cut(s) | 12 |
| GluI | GCNGC | 2 cut(s) | 65, 257 |
| GsuI | CTGGAG | 1 cut(s) | 89 |
| HaeIII | GGCC | 1 cut(s) | 35 |
| HgaI | GACGC | 1 cut(s) | 83 |
| Hin1II | CATG | 2 cut(s) | 146, 255 |
| HincII | GTYRAC | 1 cut(s) | 24 |
| HindII | GTYRAC | 1 cut(s) | 24 |
| HindIII | AAGCTT | 1 cut(s) | 429 |
| HinfI | GANTC | 3 cut(s) | 25, 82, 378 |
| HphI | GGTGA | 1 cut(s) | 206 |
| Hpy166II | GTNNAC | 4 cut(s) | 24, 59, 86, 104 |
| Hpy188I | TCNGA | 2 cut(s) | 49, 302 |
| Hpy188III | TCNNGA | 4 cut(s) | 111, 398, 412, 418 |
| Hpy8I | GTNNAC | 4 cut(s) | 24, 59, 86, 104 |
| Hpy99I | CGWCG | 1 cut(s) | 99 |
| HpyAV | CCTTC | 4 cut(s) | 149, 436, 475, 524 |
| HpyCH4IV | ACGT | 1 cut(s) | 493 |
| HpyCH4V | TGCA | 6 cut(s) | 146, 184, 218, 231, 346, 520 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 143, 503 |
| HpyF3I | CTNAG | 2 cut(s) | 203, 546 |
| HpySE526I | ACGT | 1 cut(s) | 493 |
| Hsp92II | CATG | 2 cut(s) | 146, 255 |
| Kzo9I | GATC | 6 cut(s) | 49, 107, 196, 337, 414, 451 |
| LguI | GCTCTTC | 1 cut(s) | 11 |
| Lsp1109I | GCAGC | 2 cut(s) | 51, 268 |
| LweI | GCATC | 1 cut(s) | 146 |
| MaeI | CTAG | 1 cut(s) | 12 |
| MaeII | ACGT | 1 cut(s) | 493 |
| MaeIII | GTNAC | 1 cut(s) | 387 |
| MalI | GATC | 6 cut(s) | 51, 109, 198, 339, 416, 453 |
| MboI | GATC | 6 cut(s) | 49, 107, 196, 337, 414, 451 |
| MboII | GAAGA | 3 cut(s) | 9, 413, 474 |
| MflI | RGATCY | 1 cut(s) | 414 |
| MhlI | GDGCHC | 1 cut(s) | 499 |
| MluCI | AATT | 2 cut(s) | 128, 317 |
| MlyI | GAGTC | 2 cut(s) | 19, 91 |
| MnlI | CCTC | 5 cut(s) | 212, 285, 338, 377, 414 |
| Mph1103I | ATGCAT | 1 cut(s) | 348 |
| MseI | TTAA | 3 cut(s) | 225, 312, 510 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 143, 503 |
| NdeII | GATC | 6 cut(s) | 49, 107, 196, 337, 414, 451 |
| NlaIII | CATG | 2 cut(s) | 146, 255 |
| NlaIV | GGNNCC | 2 cut(s) | 36, 416 |
| NsiI | ATGCAT | 1 cut(s) | 348 |
| PciSI | GCTCTTC | 1 cut(s) | 11 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 103 |
| PfeI | GAWTC | 1 cut(s) | 378 |
| PkrI | GCNGC | 2 cut(s) | 66, 258 |
| PleI | GAGTC | 2 cut(s) | 19, 90 |
| PpsI | GAGTC | 2 cut(s) | 19, 90 |
| PspN4I | GGNNCC | 2 cut(s) | 36, 416 |
| PspPI | GGNCC | 2 cut(s) | 34, 423 |
| PsuI | RGATCY | 1 cut(s) | 414 |
| RsaI | GTAC | 1 cut(s) | 43 |
| RsaNI | GTAC | 1 cut(s) | 42 |
| SapI | GCTCTTC | 1 cut(s) | 11 |
| SaqAI | TTAA | 3 cut(s) | 225, 312, 510 |
| SatI | GCNGC | 2 cut(s) | 65, 257 |
| Sau3AI | GATC | 6 cut(s) | 49, 107, 196, 337, 414, 451 |
| Sau96I | GGNCC | 2 cut(s) | 34, 423 |
| SchI | GAGTC | 2 cut(s) | 19, 91 |
| SduI | GDGCHC | 1 cut(s) | 499 |
| SetI | ASST | 6 cut(s) | 160, 238, 425, 433, 496, 535 |
| SfaNI | GCATC | 1 cut(s) | 146 |
| SinI | GGWCC | 1 cut(s) | 423 |
| SmlI | CTYRAG | 2 cut(s) | 396, 476 |
| SmoI | CTYRAG | 2 cut(s) | 396, 476 |
| Sse9I | AATT | 2 cut(s) | 128, 317 |
| SsiI | CCGC | 3 cut(s) | 277, 284, 353 |
| SspMI | CTAG | 1 cut(s) | 12 |
| TaiI | ACGT | 1 cut(s) | 496 |
| TaqI | TCGA | 3 cut(s) | 336, 376, 499 |
| TasI | AATT | 2 cut(s) | 128, 317 |
| TatI | WGTACW | 1 cut(s) | 41 |
| TfiI | GAWTC | 1 cut(s) | 378 |
| Tru1I | TTAA | 3 cut(s) | 225, 312, 510 |
| Tru9I | TTAA | 3 cut(s) | 225, 312, 510 |
| TscAI | CASTG | 1 cut(s) | 186 |
| TseI | GCWGC | 2 cut(s) | 64, 256 |
| TspDTI | ATGAA | 1 cut(s) | 461 |
| TspRI | CASTG | 1 cut(s) | 186 |
| VpaK11BI | GGWCC | 1 cut(s) | 423 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 206 |
| XmiI | GTMKAC | 1 cut(s) | 58 |
| XspI | CTAG | 1 cut(s) | 12 |
| Zsp2I | ATGCAT | 1 cut(s) | 348 |