Rmu_sc0002848.1_g000015

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002848.1
OG0000016
Physical Location & Seq
Forward (+)
44284 .. 44793
510 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002848.1_g000015.1.cds

Sequence Viewer

Length: 510 bp
atggtttgtttaactacgtactctggggtttggtgtacgaatgatacagatttggaggaggttgtggtacactattttcaggagctgttttcttcgtcccaaccaggaactttctggaacattcttgagggagttacgtggtgtatttcagagagtgataatagcatattaacaagacagtttgaaaaagaggaggtgtatgcatctctgaaaagtatgcatcattctaagtctccaggaccagacgggttctctcctagttttttccaaactttttgggagttagtcggggatgatattgtgggggcggtgaaggagttctttgtgtctgatgaaaatttgagagctataaactggacgtatgtggccttgatccccaaggttgaggctcctcagtatattcatcaacttcgccccataagtttgtgcaacgttatctacaagttgggttcaaaagtattggctaaccggttaaagccgctgcttgattcattgatctctccatattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000313 GO:0000462 GO:0000956 GO:0002164 GO:0002181 GO:0002182 GO:0002376 GO:0002520 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006412 GO:0006413 GO:0006414 GO:0006518 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009547 GO:0009570 GO:0009790 GO:0009791 GO:0009792 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0012505 GO:0015031 GO:0015833 GO:0015935 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0019222 GO:0019439 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030097 GO:0030490 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033365 GO:0034470 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0034655 GO:0034660 GO:0035166 GO:0035167 GO:0042254 GO:0042255 GO:0042274 GO:0042886 GO:0043009 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043253 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046483 GO:0046700 GO:0046907 GO:0048513 GO:0048519 GO:0048534 GO:0048542 GO:0048569 GO:0048731 GO:0048732 GO:0048856 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051726 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070727 GO:0070925 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0071826 GO:0071840 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0090304 GO:1901360 GO:1901361 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N Ribosomal_S8e

Protein Analysis

169

Amino Acids

19.25

Weight (kDa)

4.88

Isoelectric Point (pI)

44.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000016)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14281 FvH4_1g17621 FvH4_1g18471 FvH4_1g22021 FvH4_1g26014 FvH4_1g26331 FvH4_1g26332 FvH4_1g27351 FvH4_2g04721 FvH4_3g23731 FvH4_4g01641 FvH4_4g08952 FvH4_5g04831 FvH4_5g06181 FvH4_5g24782 FvH4_6g19793 FvH4_6g21830 FvH4_6g22052 FvH4_6g22781 FvH4_6g28711 FvH4_6g38132 FvH4_7g01611 FvH4_7g04461 FvH4_7g10253
malus_domestica MD12G1214900.v1.1
prunus_persica Prupe.1G178300_v2.0.a1 Prupe.2G081900_v2.0.a1 Prupe.7G035400_v2.0.a1 Prupe.8G101400_v2.0.a1
pyrus_communis pycom1094g00140 pycom11g05210 pycom15g38150
rosa_chinensis RchiOBHm_Chr0c45g0503781 RchiOBHm_Chr2g0127321 RchiOBHm_Chr2g0136131 RchiOBHm_Chr2g0137531 RchiOBHm_Chr3g0458071 RchiOBHm_Chr3g0468741 RchiOBHm_Chr4g0385261 RchiOBHm_Chr4g0398301 RchiOBHm_Chr4g0414741 RchiOBHm_Chr4g0427601 RchiOBHm_Chr5g0038191 RchiOBHm_Chr6g0264691 RchiOBHm_Chr7g0222611
rosa_laevigata RLG00000000450 RLG00000012411 RLG00000013342 RLG00000014003 RLG00000014274 RLG00000015222 RLG00000015327 RLG00000017257 RLG00000018284 RLG00000018325 RLG00000021633 RLG00000030959 RLG00000031522 RLG00000031692 RLG00000034534 RLG00000034656 RLG00000034719 RLG00000034775 RLG00000035707 RLG00000035994 RLG00000036662
rosa_multiflora Rmu_co7958827.1_g000001 Rmu_co7982736.1_g000001 Rmu_co7994068.1_g000001 Rmu_co8004766.1_g000001 Rmu_co8055616.1_g000001 Rmu_co8065842.1_g000001 Rmu_co8075422.1_g000001 Rmu_co8115052.1_g000001 Rmu_co8123540.1_g000001 Rmu_co8130588.1_g000001 Rmu_co8141300.1_g000001 Rmu_co8175458.1_g000001 Rmu_co8181142.1_g000001 Rmu_co8186168.1_g000001 Rmu_co8186320.1_g000001 Rmu_co8193972.1_g000001 Rmu_co8218810.1_g000001 Rmu_co8231243.1_g000001 Rmu_co8235827.1_g000001 Rmu_co8238175.1_g000001 Rmu_co8252519.1_g000001 Rmu_co8277813.1_g000001 Rmu_co8305149.1_g000001 Rmu_co8330153.1_g000001 Rmu_co8337761.1_g000001 Rmu_co8342667.1_g000001 Rmu_co8342835.1_g000001 Rmu_co8350369.1_g000001 Rmu_co8364117.1_g000001 Rmu_co8396865.1_g000001 Rmu_co8397583.1_g000001 Rmu_co8402971.1_g000001 Rmu_co8412027.1_g000001 Rmu_co8412027.1_g000002 Rmu_co8426061.1_g000001 Rmu_co8426061.1_g000002 Rmu_co8432275.1_g000001 Rmu_co8439531.1_g000001 Rmu_co8445913.1_g000001 Rmu_co8449645.1_g000001 Rmu_co8455737.1_g000001 Rmu_co8459617.1_g000001 Rmu_co8465509.1_g000001 Rmu_co8471819.1_g000001 Rmu_co8481247.1_g000001 Rmu_co8504529.1_g000001 Rmu_co8509881.1_g000001 Rmu_co8513417.1_g000001 Rmu_co8519167.1_g000002 Rmu_sc0000028.1_g000006 Rmu_sc0000030.1_g000003 Rmu_sc0000047.1_g000031 Rmu_sc0000084.1_g000023 Rmu_sc0000166.1_g000048 Rmu_sc0000335.1_g000038 Rmu_sc0000361.1_g000054 Rmu_sc0000363.1_g000059 Rmu_sc0000365.1_g000045 Rmu_sc0000367.1_g000153 Rmu_sc0000367.1_g000156 Rmu_sc0000367.1_g000157 Rmu_sc0000370.1_g000020 Rmu_sc0000371.1_g000009 Rmu_sc0000371.1_g000010 Rmu_sc0000371.1_g000037 Rmu_sc0000388.1_g000042 Rmu_sc0000388.1_g000051 Rmu_sc0000388.1_g000060 Rmu_sc0000395.1_g000004 Rmu_sc0000395.1_g000005 Rmu_sc0000447.1_g000006 Rmu_sc0000487.1_g000076 Rmu_sc0000499.1_g000009 Rmu_sc0000508.1_g000007 Rmu_sc0000511.1_g000014 Rmu_sc0000511.1_g000015 Rmu_sc0000516.1_g000028 Rmu_sc0000540.1_g000059 Rmu_sc0000543.1_g000053 Rmu_sc0000556.1_g000011 Rmu_sc0000565.1_g000039 Rmu_sc0000574.1_g000015 Rmu_sc0000575.1_g000008 Rmu_sc0000586.1_g000010 Rmu_sc0000663.1_g000017 Rmu_sc0000676.1_g000012 Rmu_sc0000717.1_g000020 Rmu_sc0000744.1_g000048 Rmu_sc0000764.1_g000004 Rmu_sc0000795.1_g000004 Rmu_sc0000805.1_g000018 Rmu_sc0000805.1_g000034 Rmu_sc0000806.1_g000035 Rmu_sc0000806.1_g000036 Rmu_sc0000838.1_g000013 Rmu_sc0000901.1_g000012 Rmu_sc0001062.1_g000012 Rmu_sc0001075.1_g000024 Rmu_sc0001126.1_g000009 Rmu_sc0001136.1_g000047 Rmu_sc0001143.1_g000025 Rmu_sc0001211.1_g000064 Rmu_sc0001291.1_g000032 Rmu_sc0001385.1_g000001 Rmu_sc0001387.1_g000007 Rmu_sc0001405.1_g000010 Rmu_sc0001433.1_g000034 Rmu_sc0001468.1_g000005 Rmu_sc0001516.1_g000071 Rmu_sc0001544.1_g000029 Rmu_sc0001556.1_g000005 Rmu_sc0001565.1_g000015 Rmu_sc0001569.1_g000001 Rmu_sc0001572.1_g000021 Rmu_sc0001619.1_g000008 Rmu_sc0001623.1_g000004 Rmu_sc0001625.1_g000004 Rmu_sc0001631.1_g000011 Rmu_sc0001653.1_g000032 Rmu_sc0001654.1_g000022 Rmu_sc0001701.1_g000018 Rmu_sc0001749.1_g000001 Rmu_sc0001764.1_g000002 Rmu_sc0001764.1_g000003 Rmu_sc0001793.1_g000058 Rmu_sc0001793.1_g000059 Rmu_sc0001836.1_g000041 Rmu_sc0001850.1_g000008 Rmu_sc0001911.1_g000004 Rmu_sc0002070.1_g000016 Rmu_sc0002070.1_g000032 Rmu_sc0002094.1_g000003 Rmu_sc0002107.1_g000010 Rmu_sc0002116.1_g000005 Rmu_sc0002132.1_g000014 Rmu_sc0002138.1_g000003 Rmu_sc0002192.1_g000015 Rmu_sc0002244.1_g000047 Rmu_sc0002269.1_g000020 Rmu_sc0002271.1_g000008 Rmu_sc0002283.1_g000011 Rmu_sc0002343.1_g000061 Rmu_sc0002343.1_g000074 Rmu_sc0002369.1_g000002 Rmu_sc0002403.1_g000003 Rmu_sc0002425.1_g000011 Rmu_sc0002425.1_g000012 Rmu_sc0002447.1_g000017 Rmu_sc0002494.1_g000013 Rmu_sc0002515.1_g000006 Rmu_sc0002515.1_g000007 Rmu_sc0002529.1_g000018 Rmu_sc0002556.1_g000010 Rmu_sc0002586.1_g000010 Rmu_sc0002693.1_g000012 Rmu_sc0002725.1_g000002 Rmu_sc0002738.1_g000006 Rmu_sc0002754.1_g000037 Rmu_sc0002776.1_g000038 Rmu_sc0002793.1_g000008 Rmu_sc0002840.1_g000003 Rmu_sc0002843.1_g000013 Rmu_sc0002843.1_g000014 Rmu_sc0002848.1_g000015 Rmu_sc0002858.1_g000011 Rmu_sc0002927.1_g000005 Rmu_sc0002955.1_g000018 Rmu_sc0002964.1_g000006 Rmu_sc0002986.1_g000055 Rmu_sc0003064.1_g000003 Rmu_sc0003110.1_g000023 Rmu_sc0003124.1_g000014 Rmu_sc0003226.1_g000009 Rmu_sc0003337.1_g000037 Rmu_sc0003387.1_g000002 Rmu_sc0003443.1_g000021 Rmu_sc0003475.1_g000023 Rmu_sc0003669.1_g000033 Rmu_sc0003722.1_g000039 Rmu_sc0003804.1_g000008 Rmu_sc0003804.1_g000009 Rmu_sc0003809.1_g000015 Rmu_sc0003858.1_g000005 Rmu_sc0003919.1_g000010 Rmu_sc0003919.1_g000011 Rmu_sc0004010.1_g000015 Rmu_sc0004036.1_g000004 Rmu_sc0004086.1_g000014 Rmu_sc0004115.1_g000017 Rmu_sc0004133.1_g000013 Rmu_sc0004139.1_g000002 Rmu_sc0004154.1_g000016 Rmu_sc0004165.1_g000088 Rmu_sc0004206.1_g000010 Rmu_sc0004212.1_g000006 Rmu_sc0004213.1_g000007 Rmu_sc0004331.1_g000018 Rmu_sc0004469.1_g000002 Rmu_sc0004565.1_g000004 Rmu_sc0004574.1_g000059 Rmu_sc0004591.1_g000009 Rmu_sc0004610.1_g000004 Rmu_sc0004610.1_g000005 Rmu_sc0004683.1_g000008 Rmu_sc0004723.1_g000003 Rmu_sc0004795.1_g000006 Rmu_sc0004825.1_g000009 Rmu_sc0004841.1_g000043 Rmu_sc0005039.1_g000005 Rmu_sc0005046.1_g000017 Rmu_sc0005173.1_g000012 Rmu_sc0005197.1_g000005 Rmu_sc0005255.1_g000043 Rmu_sc0005285.1_g000010 Rmu_sc0005310.1_g000051 Rmu_sc0005379.1_g000004 Rmu_sc0005385.1_g000015 Rmu_sc0005416.1_g000030 Rmu_sc0005652.1_g000015 Rmu_sc0005745.1_g000015 Rmu_sc0005748.1_g000007 Rmu_sc0005913.1_g000013 Rmu_sc0005950.1_g000016 Rmu_sc0006028.1_g000010 Rmu_sc0006153.1_g000025 Rmu_sc0006184.1_g000021 Rmu_sc0006240.1_g000001 Rmu_sc0006266.1_g000058 Rmu_sc0006323.1_g000013 Rmu_sc0006410.1_g000011 Rmu_sc0006452.1_g000010 Rmu_sc0006537.1_g000008 Rmu_sc0006669.1_g000011 Rmu_sc0006683.1_g000017 Rmu_sc0006691.1_g000004 Rmu_sc0006691.1_g000005 Rmu_sc0006743.1_g000004 Rmu_sc0006793.1_g000001 Rmu_sc0006793.1_g000002 Rmu_sc0006824.1_g000020 Rmu_sc0006959.1_g000018 Rmu_sc0007006.1_g000003 Rmu_sc0007130.1_g000009 Rmu_sc0007221.1_g000004 Rmu_sc0007222.1_g000004 Rmu_sc0007237.1_g000007 Rmu_sc0007292.1_g000013 Rmu_sc0007402.1_g000004 Rmu_sc0007475.1_g000009 Rmu_sc0007635.1_g000001 Rmu_sc0007742.1_g000023 Rmu_sc0007742.1_g000024 Rmu_sc0007802.1_g000033 Rmu_sc0007833.1_g000002 Rmu_sc0007994.1_g000002 Rmu_sc0007994.1_g000003 Rmu_sc0008079.1_g000002 Rmu_sc0008192.1_g000009 Rmu_sc0008529.1_g000021 Rmu_sc0008546.1_g000003 Rmu_sc0008564.1_g000001 Rmu_sc0008676.1_g000026 Rmu_sc0008713.1_g000017 Rmu_sc0008834.1_g000004 Rmu_sc0008967.1_g000017 Rmu_sc0009073.1_g000001 Rmu_sc0009449.1_g000002 Rmu_sc0009674.1_g000003 Rmu_sc0009725.1_g000006 Rmu_sc0010019.1_g000012 Rmu_sc0010132.1_g000034 Rmu_sc0010190.1_g000005 Rmu_sc0010221.1_g000003 Rmu_sc0010224.1_g000002 Rmu_sc0010242.1_g000005 Rmu_sc0010262.1_g000002 Rmu_sc0010338.1_g000011 Rmu_sc0010368.1_g000003 Rmu_sc0010533.1_g000001 Rmu_sc0011216.1_g000005 Rmu_sc0011272.1_g000003 Rmu_sc0011582.1_g000011 Rmu_sc0011585.1_g000002 Rmu_sc0011851.1_g000003 Rmu_sc0011851.1_g000006 Rmu_sc0011917.1_g000001 Rmu_sc0012031.1_g000005 Rmu_sc0012591.1_g000001 Rmu_sc0012856.1_g000014 Rmu_sc0013107.1_g000001 Rmu_sc0013545.1_g000001 Rmu_sc0013783.1_g000005 Rmu_sc0013801.1_g000004 Rmu_sc0013980.1_g000004 Rmu_sc0014006.1_g000006 Rmu_sc0014097.1_g000013 Rmu_sc0014404.1_g000011 Rmu_sc0015273.1_g000001 Rmu_sc0015957.1_g000003 Rmu_sc0015996.1_g000001 Rmu_sc0016141.1_g000011 Rmu_sc0016264.1_g000003 Rmu_sc0017005.1_g000007 Rmu_sc0017112.1_g000001 Rmu_sc0017245.1_g000001 Rmu_sc0018139.1_g000001 Rmu_sc0018325.1_g000007 Rmu_sc0018528.1_g000005 Rmu_sc0018646.1_g000003 Rmu_sc0019157.1_g000002 Rmu_sc0019342.1_g000001 Rmu_sc0019693.1_g000001 Rmu_sc0019742.1_g000003 Rmu_sc0020648.1_g000001 Rmu_sc0021123.1_g000002 Rmu_sc0022252.1_g000001 Rmu_sc0022252.1_g000002 Rmu_sc0023534.1_g000004 Rmu_sc0023853.1_g000003 Rmu_sc0024187.1_g000001 Rmu_sc0024395.1_g000001 Rmu_sc0024668.1_g000001 Rmu_sc0025262.1_g000001 Rmu_sc0026159.1_g000001 Rmu_sc0026159.1_g000002 Rmu_sc0026590.1_g000003 Rmu_sc0027036.1_g000008 Rmu_sc0027184.1_g000006 Rmu_sc0027690.1_g000002 Rmu_sc0030913.1_g000001 Rmu_sc0032471.1_g000002 Rmu_sc0033139.1_g000001 Rmu_sc0033765.1_g000002 Rmu_sc0034257.1_g000002 Rmu_sc0034655.1_g000001 Rmu_sc0035277.1_g000001 Rmu_sc0035833.1_g000001 Rmu_sc0037386.1_g000002 Rmu_sc0042113.1_g000001 Rmu_sc0042241.1_g000001 Rmu_ssc0000011.1_g000022 Rmu_ssc0000026.1_g000004 Rmu_ssc0000042.1_g000015 Rmu_ssc0000071.1_g000003 Rmu_ssc0000087.1_g000002 Rmu_ssc0000091.1_g000023 Rmu_ssc0000120.1_g000002 Rmu_ssc0000127.1_g000002 Rmu_ssc0000151.1_g000019 Rmu_ssc0000197.1_g000021 Rmu_ssc0000215.1_g000014 Rmu_ssc0000240.1_g000011 Rmu_ssc0000252.1_g000035 Rmu_ssc0000255.1_g000075 Rmu_ssc0000377.1_g000026 Rmu_ssc0000388.1_g000055 Rmu_ssc0000391.1_g000010 Rmu_ssc0000395.1_g000043 Rmu_ssc0000432.1_g000011 Rmu_ssc0000432.1_g000045 Rmu_ssc0000432.1_g000084
rosa_roxburghii Rroxscaffold_1G00003990 Rroxscaffold_1G00032350 Rroxscaffold_2G00104520 Rroxscaffold_2G00114410 Rroxscaffold_3G00261440 Rroxscaffold_5G00340750 Rroxscaffold_5G00344400 Rroxscaffold_5G00360340 Rroxscaffold_6G00400850 Rroxscaffold_7G00187980 Rroxscaffold_7G00191360
rosa_rugosa Rorug01G0062600 Rorug01G0235400 Rorug01G0286700 Rorug01G0286800 Rorug01G0332400 Rorug01G0332900 Rorug02G0087500 Rorug02G0110000.1 Rorug02G0114100 Rorug02G0262600 Rorug02G0330000 Rorug03G0232500 Rorug04G0022800 Rorug04G0038200 Rorug04G0114000 Rorug04G0158400 Rorug05G0168700 Rorug05G0171500 Rorug05G0206300 Rorug05G0225600 Rorug05G0256100 Rorug05G0263900 Rorug05G0317700 Rorug05G0341300 Rorug05G0389400 Rorug05G0393000 Rorug05G0393000 Rorug05G0511600 Rorug05G0586200 Rorug06G0124100 Rorug06G0124200 Rorug06G0509200 Rorug07G0197400 Rorug07G0198900 Rorug07G0289300 Rorug07G0289400.1 Rorug07G0294900
rosa_samantha Rh1AG125600 Rh1BG063800 Rh1BG063900 Rh1BG151300 Rh1BG172600 Rh1CG061300 Rh1DG100800 Rh1DG122100 Rh1DG202600 Rh2AG031700 Rh2AG179100 Rh2AG215600 Rh2AG226900 Rh2AG257200 Rh2AG296600 Rh2AG420600 Rh2AG501700 Rh2AG631000 Rh2BG203000 Rh2CG062400 Rh2CG263600 Rh2CG563700 Rh2DG031200 Rh2DG320600 Rh2DG572400 Rh3CG209000 Rh3CG215500 Rh3CG234400 Rh3CG280600 Rh3CG336200 Rh3DG334900 Rh3DG339300 Rh4AG215100 Rh4AG340100 Rh4BG070800 Rh4BG096700 Rh4BG224600 Rh4BG262700 Rh4CG004600 Rh4CG196600 Rh4CG196700 Rh4CG196800 Rh4DG342500 Rh5AG066500 Rh5AG248900 Rh5AG424500 Rh5AG432600 Rh5BG115800 Rh5BG169600 Rh5CG066900 Rh5CG221400 Rh5CG227600 Rh5CG257700 Rh5CG266400 Rh5CG284700 Rh5CG319500 Rh5CG363800 Rh5CG379900 Rh5DG123900 Rh5DG367800 Rh5DG472100 Rh5DG515000 Rh5DG518000 Rh5DG548100 Rh6AG085900 Rh6AG092100 Rh6CG188200 Rh6CG190400 Rh6DG188700 Rh6DG277200 Rh6DG459400 Rh7AG010600 Rh7AG225900 Rh7AG316900 Rh7AG321000 Rh7AG483600 Rh7BG142800 Rh7DG047400 Rh7DG114300 Rh7DG143800 Rh7DG233100 Rh7DG244700 Rh7DG254300 Rh7DG327600 Rh7DG345200 Rh7DG378400
rosa_wichuraiana Rw3G012560 Rw3G022840 Rw4G003390 Rw5G027110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 308, 479
AclI AACGTT 1 cut(s) 432
AclWI GGATC 1 cut(s) 367
AcsI RAATTY 1 cut(s) 337
AfaI GTAC 3 cut(s) 20, 37, 69
AgeI ACCGGT 1 cut(s) 468
AgsI TTSAA 2 cut(s) 185, 453
AjnI CCWGG 2 cut(s) 103, 235
AluBI AGCT 2 cut(s) 85, 347
AluI AGCT 2 cut(s) 85, 347
Alw26I GTCTC 1 cut(s) 237
AlwI GGATC 1 cut(s) 367
AlwNI CAGNNNCTG 1 cut(s) 85
AoxI GGCC 1 cut(s) 366
ApeKI GCWGC 1 cut(s) 481
ApoI RAATTY 1 cut(s) 337
AsiGI ACCGGT 1 cut(s) 468
Asp700I GAANNNNTTC 1 cut(s) 317
AspS9I GGNCC 1 cut(s) 239
AsuHPI GGTGA 1 cut(s) 322
AvaII GGWCC 1 cut(s) 239
BbvI GCAGC 1 cut(s) 468
BciT130I CCWGG 2 cut(s) 105, 237
BcoDI GTCTC 1 cut(s) 237
BfaI CTAG 1 cut(s) 258
BisI GCNGC 2 cut(s) 479, 482
BlsI GCNGC 2 cut(s) 480, 483
Bme1390I CCNGG 2 cut(s) 105, 237
Bme18I GGWCC 1 cut(s) 239
BmgT120I GGNCC 1 cut(s) 239
BmiI GGNNCC 1 cut(s) 390
BmrFI CCNGG 2 cut(s) 105, 237
BmsI GCATC 2 cut(s) 212, 229
BpmI CTGGAG 1 cut(s) 219
BpuEI CTTGAG 1 cut(s) 146
BsaAI YACGTR 2 cut(s) 18, 138
BsaJI CCNNGG 1 cut(s) 378
BsaWI WCCGGW 1 cut(s) 468
Bse118I RCCGGY 1 cut(s) 468
Bse1I ACTGG 1 cut(s) 359
BseBI CCWGG 2 cut(s) 105, 237
BseDI CCNNGG 1 cut(s) 378
BseGI GGATG 1 cut(s) 298
BseMII CTCAG 1 cut(s) 407
BseNI ACTGG 1 cut(s) 359
BseRI GAGGAG 3 cut(s) 71, 206, 381
BseXI GCAGC 1 cut(s) 468
BshFI GGCC 1 cut(s) 368
BshTI ACCGGT 1 cut(s) 468
BsiSI CCGG 1 cut(s) 469
BslFI GGGAC 1 cut(s) 82
BsmAI GTCTC 1 cut(s) 237
BsmFI GGGAC 1 cut(s) 82
BsnI GGCC 1 cut(s) 368
Bsp143I GATC 2 cut(s) 372, 495
BspACI CCGC 2 cut(s) 308, 479
BspANI GGCC 1 cut(s) 368
BspCNI CTCAG 1 cut(s) 406
BspLI GGNNCC 1 cut(s) 390
BspPI GGATC 1 cut(s) 367
BsrFI RCCGGY 1 cut(s) 468
BsrI ACTGG 1 cut(s) 359
BssAI RCCGGY 1 cut(s) 468
BssECI CCNNGG 1 cut(s) 378
BssMI GATC 2 cut(s) 372, 495
BssT1I CCWWGG 1 cut(s) 378
Bst2UI CCWGG 2 cut(s) 105, 237
Bst4CI ACNGT 1 cut(s) 180
BstBAI YACGTR 2 cut(s) 18, 138
BstDEI CTNAG 2 cut(s) 228, 393
BstF5I GGATG 1 cut(s) 298
BstKTI GATC 2 cut(s) 375, 498
BstMAI GTCTC 1 cut(s) 237
BstMBI GATC 2 cut(s) 372, 495
BstNI CCWGG 2 cut(s) 105, 237
BstSCI CCNGG 2 cut(s) 103, 235
BstSNI TACGTA 1 cut(s) 18
BstV1I GCAGC 1 cut(s) 468
BsuRI GGCC 1 cut(s) 368
BtsCI GGATG 1 cut(s) 298
CaiI CAGNNNCTG 1 cut(s) 85
Cfr10I RCCGGY 1 cut(s) 468
Cfr13I GGNCC 1 cut(s) 239
Csp6I GTAC 3 cut(s) 19, 36, 68
CspAI ACCGGT 1 cut(s) 468
CviJI RGCY 6 cut(s) 85, 347, 368, 389, 464, 478
CviKI_1 RGCY 6 cut(s) 85, 347, 368, 389, 464, 478
CviQI GTAC 3 cut(s) 19, 36, 68
DdeI CTNAG 2 cut(s) 228, 393
DpnI GATC 2 cut(s) 374, 497
DpnII GATC 2 cut(s) 372, 495
Eco105I TACGTA 1 cut(s) 18
Eco130I CCWWGG 1 cut(s) 378
Eco47I GGWCC 1 cut(s) 239
EcoRII CCWGG 2 cut(s) 103, 235
EcoT14I CCWWGG 1 cut(s) 378
EcoT22I ATGCAT 2 cut(s) 205, 222
ErhI CCWWGG 1 cut(s) 378
FaiI YATR 8 cut(s) 167, 201, 218, 350, 363, 399, 419, 505
FalI AAGNNNNNCTT 2 cut(s) 305, 337
FaqI GGGAC 1 cut(s) 82
Fnu4HI GCNGC 2 cut(s) 479, 482
FokI GGATG 1 cut(s) 305
Fsp4HI GCNGC 2 cut(s) 479, 482
FspBI CTAG 1 cut(s) 258
GluI GCNGC 2 cut(s) 479, 482
GsuI CTGGAG 1 cut(s) 219
HaeIII GGCC 1 cut(s) 368
HapII CCGG 1 cut(s) 469
HinfI GANTC 1 cut(s) 488
HpaII CCGG 1 cut(s) 469
HphI GGTGA 1 cut(s) 322
Hpy166II GTNNAC 2 cut(s) 36, 70
Hpy188I TCNGA 3 cut(s) 151, 210, 331
Hpy188III TCNNGA 3 cut(s) 80, 115, 125
Hpy8I GTNNAC 2 cut(s) 36, 70
HpyAV CCTTC 1 cut(s) 307
HpyCH4III ACNGT 1 cut(s) 180
HpyCH4IV ACGT 4 cut(s) 17, 137, 359, 432
HpyCH4V TGCA 3 cut(s) 203, 220, 429
HpyF3I CTNAG 2 cut(s) 228, 393
HpySE526I ACGT 4 cut(s) 17, 137, 359, 432
Kzo9I GATC 2 cut(s) 372, 495
LmnI GCTCC 2 cut(s) 82, 394
Lsp1109I GCAGC 1 cut(s) 468
LweI GCATC 2 cut(s) 212, 229
MaeI CTAG 1 cut(s) 258
MaeII ACGT 4 cut(s) 17, 137, 359, 432
MaeIII GTNAC 1 cut(s) 133
MalI GATC 2 cut(s) 374, 497
MboI GATC 2 cut(s) 372, 495
MboII GAAGA 1 cut(s) 84
MluCI AATT 1 cut(s) 337
MnlI CCTC 7 cut(s) 49, 52, 121, 184, 187, 379, 402
Mph1103I ATGCAT 2 cut(s) 205, 222
MroXI GAANNNNTTC 1 cut(s) 317
MseI TTAA 3 cut(s) 11, 170, 473
MspA1I CMGCKG 1 cut(s) 481
MspI CCGG 1 cut(s) 469
MspR9I CCNGG 2 cut(s) 105, 237
MvaI CCWGG 2 cut(s) 105, 237
NdeII GATC 2 cut(s) 372, 495
NlaIV GGNNCC 1 cut(s) 390
NsiI ATGCAT 2 cut(s) 205, 222
PdmI GAANNNNTTC 1 cut(s) 317
PfeI GAWTC 1 cut(s) 488
PfoI TCCNGGA 1 cut(s) 235
PinAI ACCGGT 1 cut(s) 468
PkrI GCNGC 2 cut(s) 480, 483
Ppu21I YACGTR 2 cut(s) 18, 138
Psp1406I AACGTT 1 cut(s) 432
Psp6I CCWGG 2 cut(s) 103, 235
PspGI CCWGG 2 cut(s) 103, 235
PspN4I GGNNCC 1 cut(s) 390
PspPI GGNCC 1 cut(s) 239
PstNI CAGNNNCTG 1 cut(s) 85
RsaI GTAC 3 cut(s) 20, 37, 69
RsaNI GTAC 3 cut(s) 19, 36, 68
SaqAI TTAA 3 cut(s) 11, 170, 473
SatI GCNGC 2 cut(s) 479, 482
Sau3AI GATC 2 cut(s) 372, 495
Sau96I GGNCC 1 cut(s) 239
ScrFI CCNGG 2 cut(s) 105, 237
SetI ASST 9 cut(s) 20, 63, 87, 140, 198, 349, 362, 384, 435
SfaNI GCATC 2 cut(s) 212, 229
SinI GGWCC 1 cut(s) 239
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
SnaBI TACGTA 1 cut(s) 18
Sse9I AATT 1 cut(s) 337
SsiI CCGC 2 cut(s) 308, 479
SspMI CTAG 1 cut(s) 258
StyD4I CCNGG 2 cut(s) 103, 235
StyI CCWWGG 1 cut(s) 378
TaaI ACNGT 1 cut(s) 180
TaiI ACGT 4 cut(s) 20, 140, 362, 435
TasI AATT 1 cut(s) 337
TauI GCSGC 1 cut(s) 481
TfiI GAWTC 1 cut(s) 488
Tru1I TTAA 3 cut(s) 11, 170, 473
Tru9I TTAA 3 cut(s) 11, 170, 473
TseI GCWGC 1 cut(s) 481
TspDTI ATGAA 3 cut(s) 348, 392, 480
VpaK11BI GGWCC 1 cut(s) 239
XapI RAATTY 1 cut(s) 337
XcmI CCANNNNNNNNNTGG 1 cut(s) 111
XmnI GAANNNNTTC 1 cut(s) 317
XspI CTAG 1 cut(s) 258
Zsp2I ATGCAT 2 cut(s) 205, 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.