ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 347 |
| AccI | GTMKAC | 1 cut(s) | 196 |
| AciI | CCGC | 1 cut(s) | 347 |
| AclWI | GGATC | 1 cut(s) | 466 |
| AcsI | RAATTY | 2 cut(s) | 76, 276 |
| AcuI | CTGAAG | 1 cut(s) | 549 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 238, 481 |
| AflIII | ACRYGT | 1 cut(s) | 199 |
| AluBI | AGCT | 3 cut(s) | 214, 298, 356 |
| AluI | AGCT | 3 cut(s) | 214, 298, 356 |
| Alw26I | GTCTC | 1 cut(s) | 321 |
| AlwI | GGATC | 1 cut(s) | 466 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 325 |
| AoxI | GGCC | 2 cut(s) | 552, 672 |
| ApoI | RAATTY | 2 cut(s) | 76, 276 |
| AspA2I | CCTAGG | 1 cut(s) | 23 |
| AspS9I | GGNCC | 3 cut(s) | 178, 245, 553 |
| AsuC2I | CCSGG | 2 cut(s) | 233, 592 |
| AsuHPI | GGTGA | 1 cut(s) | 142 |
| AsuII | TTCGAA | 1 cut(s) | 340 |
| AvaII | GGWCC | 2 cut(s) | 178, 245 |
| AvrII | CCTAGG | 1 cut(s) | 23 |
| BccI | CCATC | 2 cut(s) | 137, 178 |
| BclI | TGATCA | 1 cut(s) | 523 |
| BcnI | CCSGG | 2 cut(s) | 233, 592 |
| BcoDI | GTCTC | 1 cut(s) | 321 |
| BfaI | CTAG | 1 cut(s) | 24 |
| BlnI | CCTAGG | 1 cut(s) | 23 |
| Bme1390I | CCNGG | 2 cut(s) | 233, 592 |
| Bme18I | GGWCC | 2 cut(s) | 178, 245 |
| BmgT120I | GGNCC | 3 cut(s) | 178, 245, 553 |
| BmiI | GGNNCC | 3 cut(s) | 179, 180, 555 |
| BmrFI | CCNGG | 2 cut(s) | 233, 592 |
| Bpu14I | TTCGAA | 1 cut(s) | 340 |
| BpuMI | CCSGG | 2 cut(s) | 233, 592 |
| BsaI | GGTCTC | 1 cut(s) | 321 |
| BsaJI | CCNNGG | 3 cut(s) | 23, 248, 590 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 238, 481 |
| Bse1I | ACTGG | 1 cut(s) | 169 |
| Bse3DI | GCAATG | 1 cut(s) | 284 |
| BseDI | CCNNGG | 3 cut(s) | 23, 248, 590 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 238, 481 |
| BseMI | GCAATG | 1 cut(s) | 284 |
| BseMII | CTCAG | 1 cut(s) | 332 |
| BseNI | ACTGG | 1 cut(s) | 169 |
| BseRI | GAGGAG | 1 cut(s) | 623 |
| BseYI | CCCAGC | 1 cut(s) | 658 |
| BshFI | GGCC | 2 cut(s) | 554, 674 |
| BsiSI | CCGG | 2 cut(s) | 232, 592 |
| BslFI | GGGAC | 1 cut(s) | 191 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 238, 481 |
| BsmAI | GTCTC | 1 cut(s) | 321 |
| BsmFI | GGGAC | 1 cut(s) | 191 |
| BsnI | GGCC | 2 cut(s) | 554, 674 |
| Bso31I | GGTCTC | 1 cut(s) | 321 |
| Bsp119I | TTCGAA | 1 cut(s) | 340 |
| Bsp143I | GATC | 3 cut(s) | 445, 471, 523 |
| BspACI | CCGC | 1 cut(s) | 347 |
| BspANI | GGCC | 2 cut(s) | 554, 674 |
| BspCNI | CTCAG | 1 cut(s) | 331 |
| BspLI | GGNNCC | 3 cut(s) | 179, 180, 555 |
| BspPI | GGATC | 1 cut(s) | 466 |
| BspQI | GCTCTTC | 1 cut(s) | 337 |
| BspT104I | TTCGAA | 1 cut(s) | 340 |
| BspTNI | GGTCTC | 1 cut(s) | 321 |
| BsrBI | CCGCTC | 1 cut(s) | 347 |
| BsrDI | GCAATG | 1 cut(s) | 284 |
| BsrI | ACTGG | 1 cut(s) | 169 |
| BssECI | CCNNGG | 3 cut(s) | 23, 248, 590 |
| BssMI | GATC | 3 cut(s) | 445, 471, 523 |
| BssT1I | CCWWGG | 1 cut(s) | 23 |
| Bst4CI | ACNGT | 2 cut(s) | 249, 315 |
| Bst6I | CTCTTC | 2 cut(s) | 337, 622 |
| BstBI | TTCGAA | 1 cut(s) | 340 |
| BstC8I | GCNNGC | 1 cut(s) | 65 |
| BstDEI | CTNAG | 1 cut(s) | 318 |
| BstDSI | CCRYGG | 1 cut(s) | 248 |
| BstKTI | GATC | 3 cut(s) | 448, 474, 526 |
| BstMAI | GTCTC | 1 cut(s) | 321 |
| BstMBI | GATC | 3 cut(s) | 445, 471, 523 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 295, 353 |
| BstNSI | RCATGY | 1 cut(s) | 203 |
| BstSCI | CCNGG | 2 cut(s) | 231, 590 |
| BsuRI | GGCC | 2 cut(s) | 554, 674 |
| BtgI | CCRYGG | 1 cut(s) | 248 |
| Cac8I | GCNNGC | 1 cut(s) | 65 |
| CaiI | CAGNNNCTG | 1 cut(s) | 325 |
| Cfr13I | GGNCC | 3 cut(s) | 178, 245, 553 |
| CviAII | CATG | 3 cut(s) | 200, 290, 399 |
| DdeI | CTNAG | 1 cut(s) | 318 |
| DpnI | GATC | 3 cut(s) | 447, 473, 525 |
| DpnII | GATC | 3 cut(s) | 445, 471, 523 |
| Eam1104I | CTCTTC | 2 cut(s) | 337, 622 |
| EarI | CTCTTC | 2 cut(s) | 337, 622 |
| Eco130I | CCWWGG | 1 cut(s) | 23 |
| Eco31I | GGTCTC | 1 cut(s) | 321 |
| Eco47I | GGWCC | 2 cut(s) | 178, 245 |
| Eco57I | CTGAAG | 1 cut(s) | 549 |
| EcoO109I | RGGNCCY | 2 cut(s) | 178, 553 |
| EcoRI | GAATTC | 1 cut(s) | 76 |
| EcoT14I | CCWWGG | 1 cut(s) | 23 |
| ErhI | CCWWGG | 1 cut(s) | 23 |
| FaeI | CATG | 3 cut(s) | 203, 293, 402 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 97, 129 |
| FaqI | GGGAC | 1 cut(s) | 191 |
| FatI | CATG | 3 cut(s) | 199, 289, 398 |
| FbaI | TGATCA | 1 cut(s) | 523 |
| FblI | GTMKAC | 1 cut(s) | 196 |
| FspBI | CTAG | 1 cut(s) | 24 |
| GsaI | CCCAGC | 1 cut(s) | 662 |
| HaeIII | GGCC | 2 cut(s) | 554, 674 |
| HapII | CCGG | 2 cut(s) | 232, 592 |
| Hin1II | CATG | 3 cut(s) | 203, 293, 402 |
| HindIII | AAGCTT | 2 cut(s) | 296, 354 |
| HinfI | GANTC | 1 cut(s) | 560 |
| HpaII | CCGG | 2 cut(s) | 232, 592 |
| HphI | GGTGA | 1 cut(s) | 142 |
| Hpy166II | GTNNAC | 2 cut(s) | 197, 396 |
| Hpy188I | TCNGA | 5 cut(s) | 321, 411, 523, 540, 568 |
| Hpy188III | TCNNGA | 2 cut(s) | 475, 624 |
| Hpy8I | GTNNAC | 2 cut(s) | 197, 396 |
| HpyAV | CCTTC | 2 cut(s) | 236, 410 |
| HpyCH4III | ACNGT | 2 cut(s) | 249, 315 |
| HpyCH4V | TGCA | 2 cut(s) | 284, 289 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 295, 353 |
| HpyF3I | CTNAG | 1 cut(s) | 318 |
| Hsp92II | CATG | 3 cut(s) | 203, 293, 402 |
| KflI | GGGWCCC | 1 cut(s) | 178 |
| Ksp22I | TGATCA | 1 cut(s) | 523 |
| Kzo9I | GATC | 3 cut(s) | 445, 471, 523 |
| LguI | GCTCTTC | 1 cut(s) | 337 |
| LmnI | GCTCC | 1 cut(s) | 211 |
| LpnPI | CCDG | 9 cut(s) | 150, 245, 369, 488, 546, 570, 605, 644, 651 |
| MaeI | CTAG | 1 cut(s) | 24 |
| MaeIII | GTNAC | 1 cut(s) | 130 |
| MalI | GATC | 3 cut(s) | 447, 473, 525 |
| MbiI | CCGCTC | 1 cut(s) | 347 |
| MboI | GATC | 3 cut(s) | 445, 471, 523 |
| MboII | GAAGA | 5 cut(s) | 85, 152, 354, 555, 639 |
| MluCI | AATT | 5 cut(s) | 76, 276, 307, 441, 460 |
| MseI | TTAA | 1 cut(s) | 270 |
| MspI | CCGG | 2 cut(s) | 232, 592 |
| MspR9I | CCNGG | 2 cut(s) | 233, 592 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 295, 353 |
| NciI | CCSGG | 2 cut(s) | 233, 592 |
| NdeII | GATC | 3 cut(s) | 445, 471, 523 |
| NlaIII | CATG | 3 cut(s) | 203, 293, 402 |
| NlaIV | GGNNCC | 3 cut(s) | 179, 180, 555 |
| NmuCI | GTSAC | 1 cut(s) | 130 |
| NspI | RCATGY | 1 cut(s) | 203 |
| NspV | TTCGAA | 1 cut(s) | 340 |
| PciI | ACATGT | 1 cut(s) | 199 |
| PciSI | GCTCTTC | 1 cut(s) | 337 |
| PfeI | GAWTC | 1 cut(s) | 560 |
| PpuMI | RGGWCCY | 1 cut(s) | 178 |
| PscI | ACATGT | 1 cut(s) | 199 |
| Psp5II | RGGWCCY | 1 cut(s) | 178 |
| PspFI | CCCAGC | 1 cut(s) | 658 |
| PspN4I | GGNNCC | 3 cut(s) | 179, 180, 555 |
| PspPI | GGNCC | 3 cut(s) | 178, 245, 553 |
| PspPPI | RGGWCCY | 1 cut(s) | 178 |
| PstNI | CAGNNNCTG | 1 cut(s) | 325 |
| SapI | GCTCTTC | 1 cut(s) | 337 |
| SaqAI | TTAA | 1 cut(s) | 270 |
| Sau3AI | GATC | 3 cut(s) | 445, 471, 523 |
| Sau96I | GGNCC | 3 cut(s) | 178, 245, 553 |
| ScrFI | CCNGG | 2 cut(s) | 233, 592 |
| SetI | ASST | 6 cut(s) | 55, 216, 224, 300, 358, 599 |
| SfuI | TTCGAA | 1 cut(s) | 340 |
| SinI | GGWCC | 2 cut(s) | 178, 245 |
| Sse9I | AATT | 5 cut(s) | 76, 276, 307, 441, 460 |
| SsiI | CCGC | 1 cut(s) | 347 |
| SspMI | CTAG | 1 cut(s) | 24 |
| StyD4I | CCNGG | 2 cut(s) | 231, 590 |
| StyI | CCWWGG | 1 cut(s) | 23 |
| TaaI | ACNGT | 2 cut(s) | 249, 315 |
| TaqI | TCGA | 1 cut(s) | 340 |
| TasI | AATT | 5 cut(s) | 76, 276, 307, 441, 460 |
| TfiI | GAWTC | 1 cut(s) | 560 |
| Tru1I | TTAA | 1 cut(s) | 270 |
| Tru9I | TTAA | 1 cut(s) | 270 |
| TseFI | GTSAC | 1 cut(s) | 130 |
| Tsp45I | GTSAC | 1 cut(s) | 130 |
| TspDTI | ATGAA | 1 cut(s) | 288 |
| VpaK11BI | GGWCC | 2 cut(s) | 178, 245 |
| XapI | RAATTY | 2 cut(s) | 76, 276 |
| XceI | RCATGY | 1 cut(s) | 203 |
| XmaJI | CCTAGG | 1 cut(s) | 23 |
| XmiI | GTMKAC | 1 cut(s) | 196 |
| XspI | CTAG | 1 cut(s) | 24 |