ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 365 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 110, 682 |
| AccII | CGCG | 1 cut(s) | 25 |
| AciI | CCGC | 1 cut(s) | 25 |
| AclWI | GGATC | 1 cut(s) | 177 |
| AcuI | CTGAAG | 1 cut(s) | 686 |
| AcyI | GRCGYC | 2 cut(s) | 362, 581 |
| AfaI | GTAC | 2 cut(s) | 595, 602 |
| AfeI | AGCGCT | 1 cut(s) | 720 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 110, 377, 559, 682 |
| AgsI | TTSAA | 1 cut(s) | 439 |
| AluBI | AGCT | 3 cut(s) | 534, 682, 700 |
| AluI | AGCT | 3 cut(s) | 534, 682, 700 |
| Alw26I | GTCTC | 3 cut(s) | 204, 381, 485 |
| AlwI | GGATC | 1 cut(s) | 177 |
| Ama87I | CYCGRG | 1 cut(s) | 186 |
| Aor51HI | AGCGCT | 1 cut(s) | 720 |
| AoxI | GGCC | 1 cut(s) | 274 |
| ApeKI | GCWGC | 1 cut(s) | 151 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 380, 412, 571, 603 |
| AspLEI | GCGC | 1 cut(s) | 721 |
| AspS9I | GGNCC | 1 cut(s) | 274 |
| AvaI | CYCGRG | 1 cut(s) | 186 |
| BauI | CACGAG | 1 cut(s) | 482 |
| BbvI | GCAGC | 1 cut(s) | 138 |
| BccI | CCATC | 1 cut(s) | 313 |
| BcoDI | GTCTC | 3 cut(s) | 204, 381, 485 |
| BfaI | CTAG | 2 cut(s) | 405, 548 |
| BfmI | CTRYAG | 1 cut(s) | 714 |
| BfoI | RGCGCY | 1 cut(s) | 722 |
| BisI | GCNGC | 1 cut(s) | 152 |
| BlsI | GCNGC | 1 cut(s) | 153 |
| BmcAI | AGTACT | 1 cut(s) | 595 |
| BmeT110I | CYCGRG | 1 cut(s) | 186 |
| BmgT120I | GGNCC | 1 cut(s) | 274 |
| BpmI | CTGGAG | 1 cut(s) | 34 |
| Bpu10I | CCTNAGC | 1 cut(s) | 470 |
| BpuEI | CTTGAG | 1 cut(s) | 535 |
| BsaHI | GRCGYC | 2 cut(s) | 362, 581 |
| BsaI | GGTCTC | 2 cut(s) | 381, 485 |
| BsaJI | CCNNGG | 1 cut(s) | 734 |
| BsaWI | WCCGGW | 1 cut(s) | 249 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 110, 377, 559, 682 |
| Bse1I | ACTGG | 1 cut(s) | 671 |
| Bse3DI | GCAATG | 1 cut(s) | 564 |
| BseDI | CCNNGG | 1 cut(s) | 734 |
| BseGI | GGATG | 3 cut(s) | 463, 505, 712 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 110, 377, 559, 682 |
| BseMI | GCAATG | 1 cut(s) | 564 |
| BseMII | CTCAG | 5 cut(s) | 306, 383, 408, 484, 563 |
| BseNI | ACTGG | 1 cut(s) | 671 |
| BseRI | GAGGAG | 2 cut(s) | 323, 434 |
| BseXI | GCAGC | 1 cut(s) | 138 |
| Bsh1236I | CGCG | 1 cut(s) | 25 |
| BshFI | GGCC | 1 cut(s) | 276 |
| BsiHKCI | CYCGRG | 1 cut(s) | 186 |
| BsiSI | CCGG | 1 cut(s) | 250 |
| BslFI | GGGAC | 2 cut(s) | 536, 592 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 110, 377, 559, 682 |
| BsmAI | GTCTC | 3 cut(s) | 204, 381, 485 |
| BsmFI | GGGAC | 2 cut(s) | 536, 592 |
| BsnI | GGCC | 1 cut(s) | 276 |
| Bso31I | GGTCTC | 2 cut(s) | 381, 485 |
| BsoBI | CYCGRG | 1 cut(s) | 186 |
| Bsp1407I | TGTACA | 1 cut(s) | 600 |
| Bsp143I | GATC | 1 cut(s) | 182 |
| BspACI | CCGC | 1 cut(s) | 25 |
| BspANI | GGCC | 1 cut(s) | 276 |
| BspCNI | CTCAG | 5 cut(s) | 307, 384, 409, 483, 564 |
| BspFNI | CGCG | 1 cut(s) | 25 |
| BspPI | GGATC | 1 cut(s) | 177 |
| BspTNI | GGTCTC | 2 cut(s) | 381, 485 |
| BsrDI | GCAATG | 1 cut(s) | 564 |
| BsrGI | TGTACA | 1 cut(s) | 600 |
| BsrI | ACTGG | 1 cut(s) | 671 |
| BssECI | CCNNGG | 1 cut(s) | 734 |
| BssMI | GATC | 1 cut(s) | 182 |
| BssNI | GRCGYC | 2 cut(s) | 362, 581 |
| BssSI | CACGAG | 1 cut(s) | 482 |
| BssT1I | CCWWGG | 1 cut(s) | 734 |
| Bst2BI | CACGAG | 1 cut(s) | 482 |
| Bst6I | CTCTTC | 1 cut(s) | 573 |
| BstACI | GRCGYC | 2 cut(s) | 362, 581 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 148 |
| BstAUI | TGTACA | 1 cut(s) | 600 |
| BstC8I | GCNNGC | 2 cut(s) | 244, 489 |
| BstDEI | CTNAG | 5 cut(s) | 315, 392, 417, 470, 572 |
| BstF5I | GGATG | 3 cut(s) | 463, 505, 712 |
| BstFNI | CGCG | 1 cut(s) | 25 |
| BstH2I | RGCGCY | 1 cut(s) | 722 |
| BstHHI | GCGC | 1 cut(s) | 721 |
| BstKTI | GATC | 1 cut(s) | 185 |
| BstMAI | GTCTC | 3 cut(s) | 204, 381, 485 |
| BstMBI | GATC | 1 cut(s) | 182 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 148, 160 |
| BstNSI | RCATGY | 2 cut(s) | 491, 648 |
| BstSFI | CTRYAG | 1 cut(s) | 714 |
| BstUI | CGCG | 1 cut(s) | 25 |
| BstV1I | GCAGC | 1 cut(s) | 138 |
| BsuRI | GGCC | 1 cut(s) | 276 |
| BtsCI | GGATG | 3 cut(s) | 463, 505, 712 |
| Cac8I | GCNNGC | 2 cut(s) | 244, 489 |
| CfoI | GCGC | 1 cut(s) | 721 |
| Cfr13I | GGNCC | 1 cut(s) | 274 |
| CseI | GACGC | 1 cut(s) | 589 |
| Csp6I | GTAC | 2 cut(s) | 594, 601 |
| CviAII | CATG | 3 cut(s) | 105, 488, 645 |
| CviJI | RGCY | 4 cut(s) | 276, 534, 682, 700 |
| CviKI_1 | RGCY | 4 cut(s) | 276, 534, 682, 700 |
| CviQI | GTAC | 2 cut(s) | 594, 601 |
| DdeI | CTNAG | 5 cut(s) | 315, 392, 417, 470, 572 |
| DpnI | GATC | 1 cut(s) | 184 |
| DpnII | GATC | 1 cut(s) | 182 |
| DraI | TTTAAA | 1 cut(s) | 270 |
| Eam1104I | CTCTTC | 1 cut(s) | 573 |
| EarI | CTCTTC | 1 cut(s) | 573 |
| Eco130I | CCWWGG | 1 cut(s) | 734 |
| Eco31I | GGTCTC | 2 cut(s) | 381, 485 |
| Eco47III | AGCGCT | 1 cut(s) | 720 |
| Eco57I | CTGAAG | 1 cut(s) | 686 |
| Eco88I | CYCGRG | 1 cut(s) | 186 |
| EcoO109I | RGGNCCY | 1 cut(s) | 274 |
| EcoT14I | CCWWGG | 1 cut(s) | 734 |
| EcoT22I | ATGCAT | 1 cut(s) | 525 |
| ErhI | CCWWGG | 1 cut(s) | 734 |
| FaeI | CATG | 3 cut(s) | 108, 491, 648 |
| FaqI | GGGAC | 2 cut(s) | 536, 592 |
| FatI | CATG | 3 cut(s) | 104, 487, 644 |
| Fnu4HI | GCNGC | 1 cut(s) | 152 |
| FokI | GGATG | 3 cut(s) | 470, 512, 719 |
| Fsp4HI | GCNGC | 1 cut(s) | 152 |
| FspBI | CTAG | 2 cut(s) | 405, 548 |
| GlaI | GCGC | 1 cut(s) | 720 |
| GluI | GCNGC | 1 cut(s) | 152 |
| GsuI | CTGGAG | 1 cut(s) | 34 |
| HaeII | RGCGCY | 1 cut(s) | 722 |
| HaeIII | GGCC | 1 cut(s) | 276 |
| HapII | CCGG | 1 cut(s) | 250 |
| HgaI | GACGC | 1 cut(s) | 589 |
| HhaI | GCGC | 1 cut(s) | 721 |
| Hin1I | GRCGYC | 2 cut(s) | 362, 581 |
| Hin1II | CATG | 3 cut(s) | 108, 491, 648 |
| Hin6I | GCGC | 1 cut(s) | 719 |
| HinP1I | GCGC | 1 cut(s) | 719 |
| HinfI | GANTC | 2 cut(s) | 54, 311 |
| HpaII | CCGG | 1 cut(s) | 250 |
| Hpy166II | GTNNAC | 2 cut(s) | 357, 635 |
| Hpy188I | TCNGA | 4 cut(s) | 237, 316, 418, 573 |
| Hpy188III | TCNNGA | 3 cut(s) | 186, 358, 704 |
| Hpy8I | GTNNAC | 2 cut(s) | 357, 635 |
| Hpy99I | CGWCG | 1 cut(s) | 364 |
| HpyAV | CCTTC | 4 cut(s) | 232, 284, 470, 627 |
| HpyCH4IV | ACGT | 1 cut(s) | 362 |
| HpyCH4V | TGCA | 8 cut(s) | 40, 125, 142, 487, 491, 523, 557, 625 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 148, 160 |
| HpyF3I | CTNAG | 5 cut(s) | 315, 392, 417, 470, 572 |
| HpySE526I | ACGT | 1 cut(s) | 362 |
| Hsp92I | GRCGYC | 2 cut(s) | 362, 581 |
| Hsp92II | CATG | 3 cut(s) | 108, 491, 648 |
| HspAI | GCGC | 1 cut(s) | 719 |
| Kzo9I | GATC | 1 cut(s) | 182 |
| Lsp1109I | GCAGC | 1 cut(s) | 138 |
| MaeI | CTAG | 2 cut(s) | 405, 548 |
| MaeII | ACGT | 1 cut(s) | 362 |
| MalI | GATC | 1 cut(s) | 184 |
| MboI | GATC | 1 cut(s) | 182 |
| MboII | GAAGA | 2 cut(s) | 265, 560 |
| MluCI | AATT | 5 cut(s) | 35, 137, 349, 439, 586 |
| MlyI | GAGTC | 2 cut(s) | 48, 320 |
| MnlI | CCTC | 9 cut(s) | 109, 199, 280, 287, 301, 316, 412, 415, 569 |
| Mph1103I | ATGCAT | 1 cut(s) | 525 |
| MseI | TTAA | 3 cut(s) | 215, 269, 654 |
| MspI | CCGG | 1 cut(s) | 250 |
| MvnI | CGCG | 1 cut(s) | 25 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 148, 160 |
| NdeII | GATC | 1 cut(s) | 182 |
| NlaIII | CATG | 3 cut(s) | 108, 491, 648 |
| NsiI | ATGCAT | 1 cut(s) | 525 |
| NspI | RCATGY | 2 cut(s) | 491, 648 |
| PaeI | GCATGC | 1 cut(s) | 491 |
| PflFI | GACNNNGTC | 1 cut(s) | 548 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 110, 682 |
| PkrI | GCNGC | 1 cut(s) | 153 |
| PleI | GAGTC | 2 cut(s) | 48, 319 |
| PpsI | GAGTC | 2 cut(s) | 48, 319 |
| PspPI | GGNCC | 1 cut(s) | 274 |
| PsyI | GACNNNGTC | 1 cut(s) | 548 |
| RsaI | GTAC | 2 cut(s) | 595, 602 |
| RsaNI | GTAC | 2 cut(s) | 594, 601 |
| SaqAI | TTAA | 3 cut(s) | 215, 269, 654 |
| SatI | GCNGC | 1 cut(s) | 152 |
| Sau3AI | GATC | 1 cut(s) | 182 |
| Sau96I | GGNCC | 1 cut(s) | 274 |
| ScaI | AGTACT | 1 cut(s) | 595 |
| SchI | GAGTC | 2 cut(s) | 48, 320 |
| SetI | ASST | 8 cut(s) | 23, 365, 393, 481, 536, 549, 684, 702 |
| SfcI | CTRYAG | 1 cut(s) | 714 |
| SmlI | CTYRAG | 1 cut(s) | 514 |
| SmoI | CTYRAG | 1 cut(s) | 514 |
| SphI | GCATGC | 1 cut(s) | 491 |
| Sse9I | AATT | 5 cut(s) | 35, 137, 349, 439, 586 |
| SsiI | CCGC | 1 cut(s) | 25 |
| SspI | AATATT | 1 cut(s) | 227 |
| SspMI | CTAG | 2 cut(s) | 405, 548 |
| StyI | CCWWGG | 1 cut(s) | 734 |
| TaiI | ACGT | 1 cut(s) | 365 |
| TasI | AATT | 5 cut(s) | 35, 137, 349, 439, 586 |
| TatI | WGTACW | 2 cut(s) | 593, 600 |
| Tru1I | TTAA | 3 cut(s) | 215, 269, 654 |
| Tru9I | TTAA | 3 cut(s) | 215, 269, 654 |
| TseI | GCWGC | 1 cut(s) | 151 |
| TspDTI | ATGAA | 2 cut(s) | 474, 683 |
| Tth111I | GACNNNGTC | 1 cut(s) | 548 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 110, 682 |
| XceI | RCATGY | 2 cut(s) | 491, 648 |
| XspI | CTAG | 2 cut(s) | 405, 548 |
| ZraI | GACGTC | 1 cut(s) | 363 |
| ZrmI | AGTACT | 1 cut(s) | 595 |
| Zsp2I | ATGCAT | 1 cut(s) | 525 |