ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 393 |
| Acc36I | ACCTGC | 1 cut(s) | 545 |
| AccBSI | CCGCTC | 1 cut(s) | 619 |
| AccI | GTMKAC | 1 cut(s) | 539 |
| AciI | CCGC | 4 cut(s) | 127, 299, 455, 619 |
| AclWI | GGATC | 3 cut(s) | 288, 633, 824 |
| AcsI | RAATTY | 2 cut(s) | 605, 967 |
| AfaI | GTAC | 1 cut(s) | 321 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 198 |
| AgeI | ACCGGT | 1 cut(s) | 356 |
| AgsI | TTSAA | 3 cut(s) | 89, 466, 601 |
| AjiI | CACGTC | 1 cut(s) | 20 |
| AluBI | AGCT | 3 cut(s) | 161, 431, 551 |
| AluI | AGCT | 3 cut(s) | 161, 431, 551 |
| Alw26I | GTCTC | 1 cut(s) | 300 |
| AlwI | GGATC | 3 cut(s) | 288, 633, 824 |
| AoxI | GGCC | 2 cut(s) | 11, 128 |
| ApeKI | GCWGC | 3 cut(s) | 40, 374, 551 |
| ApoI | RAATTY | 2 cut(s) | 605, 967 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 521, 553 |
| AsiGI | ACCGGT | 1 cut(s) | 356 |
| AspA2I | CCTAGG | 1 cut(s) | 506 |
| AspLEI | GCGC | 2 cut(s) | 351, 520 |
| AspS9I | GGNCC | 1 cut(s) | 500 |
| AsuC2I | CCSGG | 1 cut(s) | 193 |
| AsuHPI | GGTGA | 2 cut(s) | 743, 746 |
| AvaII | GGWCC | 1 cut(s) | 500 |
| AvrII | CCTAGG | 1 cut(s) | 506 |
| BbvI | GCAGC | 3 cut(s) | 27, 361, 538 |
| BccI | CCATC | 4 cut(s) | 445, 700, 722, 893 |
| BclI | TGATCA | 2 cut(s) | 174, 733 |
| BcnI | CCSGG | 1 cut(s) | 193 |
| BcoDI | GTCTC | 1 cut(s) | 300 |
| BfaI | CTAG | 4 cut(s) | 158, 197, 507, 979 |
| BfmI | CTRYAG | 3 cut(s) | 67, 552, 834 |
| BfoI | RGCGCY | 1 cut(s) | 352 |
| BfuAI | ACCTGC | 1 cut(s) | 545 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 10 |
| BisI | GCNGC | 4 cut(s) | 41, 128, 375, 552 |
| BlnI | CCTAGG | 1 cut(s) | 506 |
| BlpI | GCTNAGC | 1 cut(s) | 123 |
| BlsI | GCNGC | 4 cut(s) | 42, 129, 376, 553 |
| Bme1390I | CCNGG | 1 cut(s) | 193 |
| Bme18I | GGWCC | 1 cut(s) | 500 |
| BmgBI | CACGTC | 1 cut(s) | 20 |
| BmgT120I | GGNCC | 1 cut(s) | 500 |
| BmrFI | CCNGG | 1 cut(s) | 193 |
| BmsI | GCATC | 3 cut(s) | 301, 661, 773 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 123 |
| BpuEI | CTTGAG | 1 cut(s) | 225 |
| BpuMI | CCSGG | 1 cut(s) | 193 |
| BsaBI | GATNNNNATC | 1 cut(s) | 732 |
| BsaI | GGTCTC | 1 cut(s) | 300 |
| BsaJI | CCNNGG | 3 cut(s) | 443, 506, 543 |
| BsaWI | WCCGGW | 1 cut(s) | 356 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 280, 310, 673, 703 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 198 |
| Bse118I | RCCGGY | 1 cut(s) | 356 |
| Bse1I | ACTGG | 1 cut(s) | 637 |
| Bse8I | GATNNNNATC | 1 cut(s) | 732 |
| BseDI | CCNNGG | 3 cut(s) | 443, 506, 543 |
| BseGI | GGATG | 2 cut(s) | 188, 733 |
| BseJI | GATNNNNATC | 1 cut(s) | 732 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 198 |
| BseMII | CTCAG | 2 cut(s) | 801, 876 |
| BseNI | ACTGG | 1 cut(s) | 637 |
| BseXI | GCAGC | 3 cut(s) | 27, 361, 538 |
| BseYI | CCCAGC | 1 cut(s) | 28 |
| BshFI | GGCC | 2 cut(s) | 13, 130 |
| BshTI | ACCGGT | 1 cut(s) | 356 |
| BsiSI | CCGG | 2 cut(s) | 193, 357 |
| BslFI | GGGAC | 2 cut(s) | 473, 578 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 198 |
| BsmAI | GTCTC | 1 cut(s) | 300 |
| BsmFI | GGGAC | 2 cut(s) | 473, 578 |
| BsnI | GGCC | 2 cut(s) | 13, 130 |
| Bso31I | GGTCTC | 1 cut(s) | 300 |
| Bsp143I | GATC | 7 cut(s) | 174, 280, 408, 625, 733, 796, 829 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 123 |
| Bsp19I | CCATGG | 1 cut(s) | 543 |
| BspACI | CCGC | 4 cut(s) | 127, 299, 455, 619 |
| BspANI | GGCC | 2 cut(s) | 13, 130 |
| BspCNI | CTCAG | 2 cut(s) | 800, 877 |
| BspMAI | CTGCAG | 2 cut(s) | 556, 838 |
| BspMI | ACCTGC | 1 cut(s) | 545 |
| BspPI | GGATC | 3 cut(s) | 288, 633, 824 |
| BspTNI | GGTCTC | 1 cut(s) | 300 |
| BsrBI | CCGCTC | 1 cut(s) | 619 |
| BsrFI | RCCGGY | 1 cut(s) | 356 |
| BsrI | ACTGG | 1 cut(s) | 637 |
| BssAI | RCCGGY | 1 cut(s) | 356 |
| BssECI | CCNNGG | 3 cut(s) | 443, 506, 543 |
| BssMI | GATC | 7 cut(s) | 174, 280, 408, 625, 733, 796, 829 |
| BssT1I | CCWWGG | 3 cut(s) | 443, 506, 543 |
| Bst4CI | ACNGT | 2 cut(s) | 68, 758 |
| Bst6I | CTCTTC | 2 cut(s) | 378, 444 |
| BstDEI | CTNAG | 6 cut(s) | 8, 123, 145, 418, 787, 885 |
| BstDSI | CCRYGG | 1 cut(s) | 543 |
| BstF5I | GGATG | 2 cut(s) | 188, 733 |
| BstH2I | RGCGCY | 1 cut(s) | 352 |
| BstHHI | GCGC | 2 cut(s) | 351, 520 |
| BstKTI | GATC | 7 cut(s) | 177, 283, 411, 628, 736, 799, 832 |
| BstMAI | GTCTC | 1 cut(s) | 300 |
| BstMBI | GATC | 7 cut(s) | 174, 280, 408, 625, 733, 796, 829 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 10, 649, 853 |
| BstSCI | CCNGG | 1 cut(s) | 191 |
| BstSFI | CTRYAG | 3 cut(s) | 67, 552, 834 |
| BstV1I | GCAGC | 3 cut(s) | 27, 361, 538 |
| BstX2I | RGATCY | 1 cut(s) | 280 |
| BstYI | RGATCY | 1 cut(s) | 280 |
| BsuRI | GGCC | 2 cut(s) | 13, 130 |
| BtgI | CCRYGG | 1 cut(s) | 543 |
| BtgZI | GCGATG | 1 cut(s) | 8 |
| BtrI | CACGTC | 1 cut(s) | 20 |
| BtsCI | GGATG | 2 cut(s) | 188, 733 |
| BveI | ACCTGC | 1 cut(s) | 545 |
| CfoI | GCGC | 2 cut(s) | 351, 520 |
| Cfr10I | RCCGGY | 1 cut(s) | 356 |
| Cfr13I | GGNCC | 1 cut(s) | 500 |
| CseI | GACGC | 1 cut(s) | 836 |
| Csp6I | GTAC | 1 cut(s) | 320 |
| CspAI | ACCGGT | 1 cut(s) | 356 |
| CviAII | CATG | 8 cut(s) | 37, 119, 247, 275, 544, 568, 594, 871 |
| CviQI | GTAC | 1 cut(s) | 320 |
| DdeI | CTNAG | 6 cut(s) | 8, 123, 145, 418, 787, 885 |
| DpnI | GATC | 7 cut(s) | 176, 282, 410, 627, 735, 798, 831 |
| DpnII | GATC | 7 cut(s) | 174, 280, 408, 625, 733, 796, 829 |
| Eam1104I | CTCTTC | 2 cut(s) | 378, 444 |
| EarI | CTCTTC | 2 cut(s) | 378, 444 |
| Eco130I | CCWWGG | 3 cut(s) | 443, 506, 543 |
| Eco147I | AGGCCT | 1 cut(s) | 13 |
| Eco31I | GGTCTC | 1 cut(s) | 300 |
| Eco47I | GGWCC | 1 cut(s) | 500 |
| EcoT14I | CCWWGG | 3 cut(s) | 443, 506, 543 |
| ErhI | CCWWGG | 3 cut(s) | 443, 506, 543 |
| FaeI | CATG | 8 cut(s) | 40, 122, 250, 278, 547, 571, 597, 874 |
| FaqI | GGGAC | 2 cut(s) | 473, 578 |
| FatI | CATG | 8 cut(s) | 36, 118, 246, 274, 543, 567, 593, 870 |
| FauI | CCCGC | 1 cut(s) | 448 |
| FbaI | TGATCA | 2 cut(s) | 174, 733 |
| FblI | GTMKAC | 1 cut(s) | 539 |
| Fnu4HI | GCNGC | 4 cut(s) | 41, 128, 375, 552 |
| FokI | GGATG | 2 cut(s) | 175, 740 |
| Fsp4HI | GCNGC | 4 cut(s) | 41, 128, 375, 552 |
| FspBI | CTAG | 4 cut(s) | 158, 197, 507, 979 |
| GlaI | GCGC | 2 cut(s) | 350, 519 |
| GluI | GCNGC | 4 cut(s) | 41, 128, 375, 552 |
| GsaI | CCCAGC | 1 cut(s) | 32 |
| HaeII | RGCGCY | 1 cut(s) | 352 |
| HaeIII | GGCC | 2 cut(s) | 13, 130 |
| HapII | CCGG | 2 cut(s) | 193, 357 |
| HgaI | GACGC | 1 cut(s) | 836 |
| HhaI | GCGC | 2 cut(s) | 351, 520 |
| Hin1II | CATG | 8 cut(s) | 40, 122, 250, 278, 547, 571, 597, 874 |
| Hin6I | GCGC | 2 cut(s) | 349, 518 |
| HinP1I | GCGC | 2 cut(s) | 349, 518 |
| HincII | GTYRAC | 1 cut(s) | 82 |
| HindII | GTYRAC | 1 cut(s) | 82 |
| HindIII | AAGCTT | 1 cut(s) | 429 |
| HinfI | GANTC | 4 cut(s) | 236, 250, 413, 573 |
| HpaI | GTTAAC | 1 cut(s) | 82 |
| HpaII | CCGG | 2 cut(s) | 193, 357 |
| HphI | GGTGA | 2 cut(s) | 743, 746 |
| Hpy166II | GTNNAC | 3 cut(s) | 82, 500, 540 |
| Hpy188I | TCNGA | 7 cut(s) | 255, 268, 738, 886, 913, 923, 966 |
| Hpy188III | TCNNGA | 1 cut(s) | 949 |
| Hpy8I | GTNNAC | 3 cut(s) | 82, 500, 540 |
| HpyAV | CCTTC | 1 cut(s) | 24 |
| HpyCH4III | ACNGT | 2 cut(s) | 68, 758 |
| HpyCH4IV | ACGT | 3 cut(s) | 19, 97, 683 |
| HpyCH4V | TGCA | 6 cut(s) | 43, 206, 377, 554, 836, 905 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 10, 649, 853 |
| HpyF3I | CTNAG | 6 cut(s) | 8, 123, 145, 418, 787, 885 |
| HpySE526I | ACGT | 3 cut(s) | 19, 97, 683 |
| Hsp92II | CATG | 8 cut(s) | 40, 122, 250, 278, 547, 571, 597, 874 |
| HspAI | GCGC | 2 cut(s) | 349, 518 |
| Ksp22I | TGATCA | 2 cut(s) | 174, 733 |
| KspAI | GTTAAC | 1 cut(s) | 82 |
| Kzo9I | GATC | 7 cut(s) | 174, 280, 408, 625, 733, 796, 829 |
| LmnI | GCTCC | 1 cut(s) | 616 |
| LpnPI | CCDG | 9 cut(s) | 42, 206, 218, 370, 480, 520, 540, 650, 846 |
| Lsp1109I | GCAGC | 3 cut(s) | 27, 361, 538 |
| LweI | GCATC | 3 cut(s) | 301, 661, 773 |
| MaeI | CTAG | 4 cut(s) | 158, 197, 507, 979 |
| MaeII | ACGT | 3 cut(s) | 19, 97, 683 |
| MaeIII | GTNAC | 1 cut(s) | 940 |
| MalI | GATC | 7 cut(s) | 176, 282, 410, 627, 735, 798, 831 |
| MbiI | CCGCTC | 1 cut(s) | 619 |
| MboI | GATC | 7 cut(s) | 174, 280, 408, 625, 733, 796, 829 |
| MboII | GAAGA | 4 cut(s) | 133, 275, 395, 431 |
| MflI | RGATCY | 1 cut(s) | 280 |
| MluCI | AATT | 5 cut(s) | 178, 397, 605, 697, 967 |
| MlyI | GAGTC | 1 cut(s) | 244 |
| MmeI | TCCRAC | 1 cut(s) | 603 |
| MnlI | CCTC | 7 cut(s) | 15, 513, 555, 699, 718, 723, 880 |
| MseI | TTAA | 3 cut(s) | 81, 473, 668 |
| MslI | CAYNNNNRTG | 1 cut(s) | 309 |
| MspI | CCGG | 2 cut(s) | 193, 357 |
| MspR9I | CCNGG | 1 cut(s) | 193 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 10, 649, 853 |
| NciI | CCSGG | 1 cut(s) | 193 |
| NcoI | CCATGG | 1 cut(s) | 543 |
| NdeII | GATC | 7 cut(s) | 174, 280, 408, 625, 733, 796, 829 |
| NlaIII | CATG | 8 cut(s) | 40, 122, 250, 278, 547, 571, 597, 874 |
| PceI | AGGCCT | 1 cut(s) | 13 |
| PfeI | GAWTC | 3 cut(s) | 236, 413, 573 |
| PinAI | ACCGGT | 1 cut(s) | 356 |
| PkrI | GCNGC | 4 cut(s) | 42, 129, 376, 553 |
| PleI | GAGTC | 1 cut(s) | 244 |
| PpsI | GAGTC | 1 cut(s) | 244 |
| PsiI | TTATAA | 1 cut(s) | 393 |
| PspFI | CCCAGC | 1 cut(s) | 28 |
| PspPI | GGNCC | 1 cut(s) | 500 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 731, 763 |
| PstI | CTGCAG | 2 cut(s) | 556, 838 |
| PsuI | RGATCY | 1 cut(s) | 280 |
| RsaI | GTAC | 1 cut(s) | 321 |
| RsaNI | GTAC | 1 cut(s) | 320 |
| RseI | CAYNNNNRTG | 1 cut(s) | 309 |
| SaqAI | TTAA | 3 cut(s) | 81, 473, 668 |
| SatI | GCNGC | 4 cut(s) | 41, 128, 375, 552 |
| Sau3AI | GATC | 7 cut(s) | 174, 280, 408, 625, 733, 796, 829 |
| Sau96I | GGNCC | 1 cut(s) | 500 |
| SchI | GAGTC | 1 cut(s) | 244 |
| ScrFI | CCNGG | 1 cut(s) | 193 |
| SfaNI | GCATC | 3 cut(s) | 301, 661, 773 |
| SfcI | CTRYAG | 3 cut(s) | 67, 552, 834 |
| SinI | GGWCC | 1 cut(s) | 500 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 309 |
| SmlI | CTYRAG | 1 cut(s) | 240 |
| SmoI | CTYRAG | 1 cut(s) | 240 |
| Sse9I | AATT | 5 cut(s) | 178, 397, 605, 697, 967 |
| SseBI | AGGCCT | 1 cut(s) | 13 |
| SsiI | CCGC | 4 cut(s) | 127, 299, 455, 619 |
| SspI | AATATT | 1 cut(s) | 918 |
| SspMI | CTAG | 4 cut(s) | 158, 197, 507, 979 |
| StuI | AGGCCT | 1 cut(s) | 13 |
| StyD4I | CCNGG | 1 cut(s) | 191 |
| StyI | CCWWGG | 3 cut(s) | 443, 506, 543 |
| TaaI | ACNGT | 2 cut(s) | 68, 758 |
| TaiI | ACGT | 3 cut(s) | 22, 100, 686 |
| TaqI | TCGA | 1 cut(s) | 411 |
| TaqII | GACCGA | 1 cut(s) | 282 |
| TasI | AATT | 5 cut(s) | 178, 397, 605, 697, 967 |
| TauI | GCSGC | 1 cut(s) | 130 |
| TfiI | GAWTC | 3 cut(s) | 236, 413, 573 |
| Tru1I | TTAA | 3 cut(s) | 81, 473, 668 |
| Tru9I | TTAA | 3 cut(s) | 81, 473, 668 |
| TseI | GCWGC | 3 cut(s) | 40, 374, 551 |
| TspDTI | ATGAA | 3 cut(s) | 354, 950, 968 |
| TspGWI | ACGGA | 1 cut(s) | 782 |
| VpaK11BI | GGWCC | 1 cut(s) | 500 |
| XapI | RAATTY | 2 cut(s) | 605, 967 |
| XmaJI | CCTAGG | 1 cut(s) | 506 |
| XmiI | GTMKAC | 1 cut(s) | 539 |
| XspI | CTAG | 4 cut(s) | 158, 197, 507, 979 |