Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 222 |
| AciI | CCGC | 3 cut(s) | 336, 355, 383 |
| AcsI | RAATTY | 1 cut(s) | 431 |
| AcuI | CTGAAG | 1 cut(s) | 478 |
| AfaI | GTAC | 1 cut(s) | 136 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 222 |
| AjnI | CCWGG | 1 cut(s) | 292 |
| AluBI | AGCT | 2 cut(s) | 65, 165 |
| AluI | AGCT | 2 cut(s) | 65, 165 |
| Alw21I | GWGCWC | 1 cut(s) | 84 |
| Alw26I | GTCTC | 1 cut(s) | 345 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 299 |
| AoxI | GGCC | 1 cut(s) | 384 |
| ApeKI | GCWGC | 1 cut(s) | 479 |
| ApoI | RAATTY | 1 cut(s) | 431 |
| AspLEI | GCGC | 1 cut(s) | 252 |
| AspS9I | GGNCC | 2 cut(s) | 385, 461 |
| AsuHPI | GGTGA | 1 cut(s) | 252 |
| AvaII | GGWCC | 1 cut(s) | 461 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 493, 525 |
| BbsI | GAAGAC | 1 cut(s) | 389 |
| Bbv12I | GWGCWC | 1 cut(s) | 84 |
| BbvI | GCAGC | 1 cut(s) | 491 |
| BccI | CCATC | 2 cut(s) | 224, 406 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 22, 56 |
| BciT130I | CCWGG | 1 cut(s) | 294 |
| BcoDI | GTCTC | 1 cut(s) | 345 |
| BfaI | CTAG | 4 cut(s) | 122, 380, 468, 584 |
| BisI | GCNGC | 3 cut(s) | 336, 384, 480 |
| BlsI | GCNGC | 3 cut(s) | 337, 385, 481 |
| Bme1390I | CCNGG | 1 cut(s) | 294 |
| Bme18I | GGWCC | 1 cut(s) | 461 |
| BmgT120I | GGNCC | 2 cut(s) | 385, 461 |
| BmiI | GGNNCC | 1 cut(s) | 463 |
| BmrFI | CCNGG | 1 cut(s) | 294 |
| BmsI | GCATC | 1 cut(s) | 192 |
| BpiI | GAAGAC | 1 cut(s) | 389 |
| BpmI | CTGGAG | 1 cut(s) | 477 |
| Bsa29I | ATCGAT | 1 cut(s) | 525 |
| BsaI | GGTCTC | 1 cut(s) | 345 |
| BsaJI | CCNNGG | 2 cut(s) | 205, 404 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 222 |
| Bse3DI | GCAATG | 1 cut(s) | 489 |
| BseBI | CCWGG | 1 cut(s) | 294 |
| BseCI | ATCGAT | 1 cut(s) | 525 |
| BseDI | CCNNGG | 2 cut(s) | 205, 404 |
| BseGI | GGATG | 2 cut(s) | 183, 235 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 222 |
| BseMI | GCAATG | 1 cut(s) | 489 |
| BseXI | GCAGC | 1 cut(s) | 491 |
| BseYI | CCCAGC | 1 cut(s) | 387 |
| BshFI | GGCC | 1 cut(s) | 386 |
| BshVI | ATCGAT | 1 cut(s) | 525 |
| BsiHKAI | GWGCWC | 1 cut(s) | 84 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 222 |
| BsmAI | GTCTC | 1 cut(s) | 345 |
| BsnI | GGCC | 1 cut(s) | 386 |
| Bso31I | GGTCTC | 1 cut(s) | 345 |
| Bsp1286I | GDGCHC | 1 cut(s) | 84 |
| Bsp143I | GATC | 3 cut(s) | 147, 470, 586 |
| Bsp19I | CCATGG | 1 cut(s) | 404 |
| BspACI | CCGC | 3 cut(s) | 336, 355, 383 |
| BspANI | GGCC | 1 cut(s) | 386 |
| BspDI | ATCGAT | 1 cut(s) | 525 |
| BspLI | GGNNCC | 1 cut(s) | 463 |
| BspTNI | GGTCTC | 1 cut(s) | 345 |
| BsrDI | GCAATG | 1 cut(s) | 489 |
| BssECI | CCNNGG | 2 cut(s) | 205, 404 |
| BssMI | GATC | 3 cut(s) | 147, 470, 586 |
| BssT1I | CCWWGG | 2 cut(s) | 205, 404 |
| Bst2UI | CCWGG | 1 cut(s) | 294 |
| Bst4CI | ACNGT | 2 cut(s) | 280, 566 |
| Bst6I | CTCTTC | 1 cut(s) | 343 |
| BstC8I | GCNNGC | 2 cut(s) | 84, 213 |
| BstDSI | CCRYGG | 1 cut(s) | 404 |
| BstF5I | GGATG | 2 cut(s) | 183, 235 |
| BstHHI | GCGC | 1 cut(s) | 252 |
| BstKTI | GATC | 3 cut(s) | 150, 473, 589 |
| BstMAI | GTCTC | 1 cut(s) | 345 |
| BstMBI | GATC | 3 cut(s) | 147, 470, 586 |
| BstNI | CCWGG | 1 cut(s) | 294 |
| BstNSI | RCATGY | 1 cut(s) | 242 |
| BstSCI | CCNGG | 1 cut(s) | 292 |
| BstV1I | GCAGC | 1 cut(s) | 491 |
| BstV2I | GAAGAC | 1 cut(s) | 389 |
| Bsu15I | ATCGAT | 1 cut(s) | 525 |
| BsuRI | GGCC | 1 cut(s) | 386 |
| BsuTUI | ATCGAT | 1 cut(s) | 525 |
| BtgI | CCRYGG | 1 cut(s) | 404 |
| BtsCI | GGATG | 2 cut(s) | 183, 235 |
| BtsIMutI | CAGTG | 1 cut(s) | 297 |
| Cac8I | GCNNGC | 2 cut(s) | 84, 213 |
| CaiI | CAGNNNCTG | 1 cut(s) | 299 |
| CfoI | GCGC | 1 cut(s) | 252 |
| Cfr13I | GGNCC | 2 cut(s) | 385, 461 |
| ClaI | ATCGAT | 1 cut(s) | 525 |
| Csp6I | GTAC | 1 cut(s) | 135 |
| CviAII | CATG | 6 cut(s) | 34, 191, 239, 405, 513, 555 |
| CviJI | RGCY | 4 cut(s) | 65, 165, 211, 386 |
| CviKI_1 | RGCY | 4 cut(s) | 65, 165, 211, 386 |
| CviQI | GTAC | 1 cut(s) | 135 |
| DpnI | GATC | 3 cut(s) | 149, 472, 588 |
| DpnII | GATC | 3 cut(s) | 147, 470, 586 |
| Eam1104I | CTCTTC | 1 cut(s) | 343 |
| EarI | CTCTTC | 1 cut(s) | 343 |
| Eco130I | CCWWGG | 2 cut(s) | 205, 404 |
| Eco31I | GGTCTC | 1 cut(s) | 345 |
| Eco32I | GATATC | 1 cut(s) | 76 |
| Eco47I | GGWCC | 1 cut(s) | 461 |
| Eco57I | CTGAAG | 1 cut(s) | 478 |
| EcoO109I | RGGNCCY | 1 cut(s) | 461 |
| EcoRI | GAATTC | 1 cut(s) | 431 |
| EcoRII | CCWGG | 1 cut(s) | 292 |
| EcoRV | GATATC | 1 cut(s) | 76 |
| EcoT14I | CCWWGG | 2 cut(s) | 205, 404 |
| ErhI | CCWWGG | 2 cut(s) | 205, 404 |
| FaeI | CATG | 6 cut(s) | 37, 194, 242, 408, 516, 558 |
| FatI | CATG | 6 cut(s) | 33, 190, 238, 404, 512, 554 |
| Fnu4HI | GCNGC | 3 cut(s) | 336, 384, 480 |
| FokI | GGATG | 2 cut(s) | 170, 242 |
| Fsp4HI | GCNGC | 3 cut(s) | 336, 384, 480 |
| FspBI | CTAG | 4 cut(s) | 122, 380, 468, 584 |
| GlaI | GCGC | 1 cut(s) | 251 |
| GluI | GCNGC | 3 cut(s) | 336, 384, 480 |
| GsaI | CCCAGC | 1 cut(s) | 391 |
| GsuI | CTGGAG | 1 cut(s) | 477 |
| HaeIII | GGCC | 1 cut(s) | 386 |
| HhaI | GCGC | 1 cut(s) | 252 |
| Hin1II | CATG | 6 cut(s) | 37, 194, 242, 408, 516, 558 |
| Hin6I | GCGC | 1 cut(s) | 250 |
| HinP1I | GCGC | 1 cut(s) | 250 |
| HinfI | GANTC | 4 cut(s) | 39, 143, 200, 519 |
| HphI | GGTGA | 1 cut(s) | 252 |
| Hpy166II | GTNNAC | 2 cut(s) | 518, 552 |
| Hpy188I | TCNGA | 4 cut(s) | 115, 374, 497, 600 |
| Hpy188III | TCNNGA | 4 cut(s) | 25, 43, 223, 456 |
| Hpy8I | GTNNAC | 2 cut(s) | 518, 552 |
| HpyAV | CCTTC | 2 cut(s) | 120, 568 |
| HpyCH4III | ACNGT | 2 cut(s) | 280, 566 |
| HpyCH4IV | ACGT | 1 cut(s) | 499 |
| HpyCH4V | TGCA | 2 cut(s) | 33, 183 |
| HpySE526I | ACGT | 1 cut(s) | 499 |
| Hsp92II | CATG | 6 cut(s) | 37, 194, 242, 408, 516, 558 |
| HspAI | GCGC | 1 cut(s) | 250 |
| Kzo9I | GATC | 3 cut(s) | 147, 470, 586 |
| LpnPI | CCDG | 8 cut(s) | 10, 142, 208, 279, 303, 306, 401, 441 |
| Lsp1109I | GCAGC | 1 cut(s) | 491 |
| LweI | GCATC | 1 cut(s) | 192 |
| MaeI | CTAG | 4 cut(s) | 122, 380, 468, 584 |
| MaeII | ACGT | 1 cut(s) | 499 |
| MaeIII | GTNAC | 1 cut(s) | 254 |
| MalI | GATC | 3 cut(s) | 149, 472, 588 |
| MboI | GATC | 3 cut(s) | 147, 470, 586 |
| MboII | GAAGA | 2 cut(s) | 360, 389 |
| MfeI | CAATTG | 1 cut(s) | 138 |
| MhlI | GDGCHC | 1 cut(s) | 84 |
| MluCI | AATT | 3 cut(s) | 102, 138, 431 |
| MlyI | GAGTC | 3 cut(s) | 152, 194, 513 |
| MnlI | CCTC | 3 cut(s) | 335, 452, 584 |
| MseI | TTAA | 3 cut(s) | 101, 426, 607 |
| MslI | CAYNNNNRTG | 2 cut(s) | 243, 527 |
| MspR9I | CCNGG | 1 cut(s) | 294 |
| MunI | CAATTG | 1 cut(s) | 138 |
| MvaI | CCWGG | 1 cut(s) | 294 |
| NcoI | CCATGG | 1 cut(s) | 404 |
| NdeII | GATC | 3 cut(s) | 147, 470, 586 |
| NlaIII | CATG | 6 cut(s) | 37, 194, 242, 408, 516, 558 |
| NlaIV | GGNNCC | 1 cut(s) | 463 |
| NmuCI | GTSAC | 1 cut(s) | 254 |
| NspI | RCATGY | 1 cut(s) | 242 |
| PfeI | GAWTC | 1 cut(s) | 39 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 222 |
| PkrI | GCNGC | 3 cut(s) | 337, 385, 481 |
| PleI | GAGTC | 3 cut(s) | 151, 194, 513 |
| PpsI | GAGTC | 3 cut(s) | 151, 194, 513 |
| PpuMI | RGGWCCY | 1 cut(s) | 461 |
| Psp5II | RGGWCCY | 1 cut(s) | 461 |
| Psp6I | CCWGG | 1 cut(s) | 292 |
| PspFI | CCCAGC | 1 cut(s) | 387 |
| PspGI | CCWGG | 1 cut(s) | 292 |
| PspN4I | GGNNCC | 1 cut(s) | 463 |
| PspPI | GGNCC | 2 cut(s) | 385, 461 |
| PspPPI | RGGWCCY | 1 cut(s) | 461 |
| PstNI | CAGNNNCTG | 1 cut(s) | 299 |
| RsaI | GTAC | 1 cut(s) | 136 |
| RsaNI | GTAC | 1 cut(s) | 135 |
| RseI | CAYNNNNRTG | 2 cut(s) | 243, 527 |
| SaqAI | TTAA | 3 cut(s) | 101, 426, 607 |
| SatI | GCNGC | 3 cut(s) | 336, 384, 480 |
| Sau3AI | GATC | 3 cut(s) | 147, 470, 586 |
| Sau96I | GGNCC | 2 cut(s) | 385, 461 |
| SchI | GAGTC | 3 cut(s) | 152, 194, 513 |
| ScrFI | CCNGG | 1 cut(s) | 294 |
| SduI | GDGCHC | 1 cut(s) | 84 |
| SetI | ASST | 9 cut(s) | 67, 97, 101, 161, 167, 322, 346, 502, 551 |
| SfaNI | GCATC | 1 cut(s) | 192 |
| SinI | GGWCC | 1 cut(s) | 461 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 243, 527 |
| Sse9I | AATT | 3 cut(s) | 102, 138, 431 |
| SsiI | CCGC | 3 cut(s) | 336, 355, 383 |
| SspI | AATATT | 1 cut(s) | 604 |
| SspMI | CTAG | 4 cut(s) | 122, 380, 468, 584 |
| StyD4I | CCNGG | 1 cut(s) | 292 |
| StyI | CCWWGG | 2 cut(s) | 205, 404 |
| TaaI | ACNGT | 2 cut(s) | 280, 566 |
| TaiI | ACGT | 1 cut(s) | 502 |
| TaqI | TCGA | 3 cut(s) | 146, 525, 589 |
| TasI | AATT | 3 cut(s) | 102, 138, 431 |
| TatI | WGTACW | 1 cut(s) | 134 |
| TauI | GCSGC | 2 cut(s) | 338, 386 |
| TfiI | GAWTC | 1 cut(s) | 39 |
| Tru1I | TTAA | 3 cut(s) | 101, 426, 607 |
| Tru9I | TTAA | 3 cut(s) | 101, 426, 607 |
| TscAI | CASTG | 1 cut(s) | 304 |
| TseFI | GTSAC | 1 cut(s) | 254 |
| TseI | GCWGC | 1 cut(s) | 479 |
| Tsp45I | GTSAC | 1 cut(s) | 254 |
| TspDTI | ATGAA | 4 cut(s) | 207, 246, 444, 501 |
| TspGWI | ACGGA | 1 cut(s) | 242 |
| TspRI | CASTG | 1 cut(s) | 304 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 222 |
| VpaK11BI | GGWCC | 1 cut(s) | 461 |
| XapI | RAATTY | 1 cut(s) | 431 |
| XceI | RCATGY | 1 cut(s) | 242 |
| XspI | CTAG | 4 cut(s) | 122, 380, 468, 584 |