ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 356 |
| AciI | CCGC | 4 cut(s) | 341, 371, 529, 532 |
| AclWI | GGATC | 1 cut(s) | 726 |
| AcsI | RAATTY | 1 cut(s) | 303 |
| AfaI | GTAC | 1 cut(s) | 280 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 531 |
| AgsI | TTSAA | 4 cut(s) | 257, 349, 514, 636 |
| AluBI | AGCT | 3 cut(s) | 462, 510, 660 |
| AluI | AGCT | 3 cut(s) | 462, 510, 660 |
| Alw21I | GWGCWC | 2 cut(s) | 430, 464 |
| Alw26I | GTCTC | 1 cut(s) | 277 |
| Alw44I | GTGCAC | 1 cut(s) | 426 |
| AlwI | GGATC | 1 cut(s) | 726 |
| Ama87I | CYCGRG | 1 cut(s) | 274 |
| AoxI | GGCC | 3 cut(s) | 164, 324, 522 |
| ApaLI | GTGCAC | 1 cut(s) | 426 |
| ApoI | RAATTY | 1 cut(s) | 303 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 14 |
| AspS9I | GGNCC | 3 cut(s) | 164, 325, 523 |
| AsuC2I | CCSGG | 1 cut(s) | 526 |
| AsuHPI | GGTGA | 6 cut(s) | 59, 220, 239, 374, 529, 655 |
| AvaI | CYCGRG | 1 cut(s) | 274 |
| BaeGI | GKGCMC | 1 cut(s) | 430 |
| BanII | GRGCYC | 1 cut(s) | 464 |
| BbsI | GAAGAC | 1 cut(s) | 783 |
| Bbv12I | GWGCWC | 2 cut(s) | 430, 464 |
| BccI | CCATC | 5 cut(s) | 44, 113, 117, 331, 514 |
| BcnI | CCSGG | 1 cut(s) | 526 |
| BcoDI | GTCTC | 1 cut(s) | 277 |
| BfaI | CTAG | 2 cut(s) | 72, 300 |
| BisI | GCNGC | 2 cut(s) | 342, 530 |
| BlsI | GCNGC | 2 cut(s) | 343, 531 |
| Bme1390I | CCNGG | 1 cut(s) | 526 |
| BmeT110I | CYCGRG | 1 cut(s) | 274 |
| BmgT120I | GGNCC | 3 cut(s) | 164, 325, 523 |
| BmiI | GGNNCC | 2 cut(s) | 165, 327 |
| BmrFI | CCNGG | 1 cut(s) | 526 |
| BmsI | GCATC | 4 cut(s) | 190, 191, 636, 685 |
| BoxI | GACNNNNGTC | 1 cut(s) | 801 |
| BpiI | GAAGAC | 1 cut(s) | 783 |
| BpuMI | CCSGG | 1 cut(s) | 526 |
| BsaI | GGTCTC | 1 cut(s) | 277 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 12, 42, 49, 79 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 531 |
| Bse1I | ACTGG | 1 cut(s) | 364 |
| Bse3DI | GCAATG | 1 cut(s) | 758 |
| BseGI | GGATG | 4 cut(s) | 128, 205, 700, 825 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 531 |
| BseMI | GCAATG | 1 cut(s) | 758 |
| BseMII | CTCAG | 1 cut(s) | 573 |
| BseNI | ACTGG | 1 cut(s) | 364 |
| BseSI | GKGCMC | 1 cut(s) | 430 |
| BshFI | GGCC | 3 cut(s) | 166, 326, 524 |
| BsiHKAI | GWGCWC | 2 cut(s) | 430, 464 |
| BsiHKCI | CYCGRG | 1 cut(s) | 274 |
| BsiSI | CCGG | 1 cut(s) | 526 |
| BslFI | GGGAC | 1 cut(s) | 789 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 531 |
| BsmAI | GTCTC | 1 cut(s) | 277 |
| BsmFI | GGGAC | 1 cut(s) | 789 |
| BsnI | GGCC | 3 cut(s) | 166, 326, 524 |
| Bso31I | GGTCTC | 1 cut(s) | 277 |
| BsoBI | CYCGRG | 1 cut(s) | 274 |
| Bsp1286I | GDGCHC | 2 cut(s) | 430, 464 |
| Bsp143I | GATC | 1 cut(s) | 718 |
| BspACI | CCGC | 4 cut(s) | 341, 371, 529, 532 |
| BspANI | GGCC | 3 cut(s) | 166, 326, 524 |
| BspCNI | CTCAG | 1 cut(s) | 574 |
| BspLI | GGNNCC | 2 cut(s) | 165, 327 |
| BspPI | GGATC | 1 cut(s) | 726 |
| BspTNI | GGTCTC | 1 cut(s) | 277 |
| BsrDI | GCAATG | 1 cut(s) | 758 |
| BsrI | ACTGG | 1 cut(s) | 364 |
| BssMI | GATC | 1 cut(s) | 718 |
| Bst4CI | ACNGT | 1 cut(s) | 15 |
| Bst6I | CTCTTC | 1 cut(s) | 488 |
| BstDEI | CTNAG | 1 cut(s) | 582 |
| BstF5I | GGATG | 4 cut(s) | 128, 205, 700, 825 |
| BstKTI | GATC | 1 cut(s) | 721 |
| BstMAI | GTCTC | 1 cut(s) | 277 |
| BstMBI | GATC | 1 cut(s) | 718 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 801 |
| BstSCI | CCNGG | 1 cut(s) | 524 |
| BstSLI | GKGCMC | 1 cut(s) | 430 |
| BstV2I | GAAGAC | 1 cut(s) | 783 |
| BsuRI | GGCC | 3 cut(s) | 166, 326, 524 |
| BtsCI | GGATG | 4 cut(s) | 128, 205, 700, 825 |
| BtsI | GCAGTG | 1 cut(s) | 149 |
| BtsIMutI | CAGTG | 2 cut(s) | 87, 149 |
| Cfr13I | GGNCC | 3 cut(s) | 164, 325, 523 |
| Csp6I | GTAC | 1 cut(s) | 279 |
| CviAII | CATG | 4 cut(s) | 5, 192, 416, 613 |
| CviQI | GTAC | 1 cut(s) | 279 |
| DdeI | CTNAG | 1 cut(s) | 582 |
| DpnI | GATC | 1 cut(s) | 720 |
| DpnII | GATC | 1 cut(s) | 718 |
| Eam1104I | CTCTTC | 1 cut(s) | 488 |
| EarI | CTCTTC | 1 cut(s) | 488 |
| EciI | GGCGGA | 2 cut(s) | 386, 547 |
| Ecl136II | GAGCTC | 1 cut(s) | 462 |
| Eco24I | GRGCYC | 1 cut(s) | 464 |
| Eco31I | GGTCTC | 1 cut(s) | 277 |
| Eco53kI | GAGCTC | 1 cut(s) | 462 |
| Eco88I | CYCGRG | 1 cut(s) | 274 |
| EcoICRI | GAGCTC | 1 cut(s) | 462 |
| EcoO109I | RGGNCCY | 1 cut(s) | 325 |
| EcoT22I | ATGCAT | 3 cut(s) | 6, 417, 442 |
| EcoT38I | GRGCYC | 1 cut(s) | 464 |
| FaeI | CATG | 4 cut(s) | 8, 195, 419, 616 |
| FaiI | YATR | 7 cut(s) | 6, 114, 193, 413, 417, 614, 663 |
| FaqI | GGGAC | 1 cut(s) | 789 |
| FatI | CATG | 4 cut(s) | 4, 191, 415, 612 |
| FblI | GTMKAC | 1 cut(s) | 356 |
| Fnu4HI | GCNGC | 2 cut(s) | 342, 530 |
| FokI | GGATG | 3 cut(s) | 135, 212, 707 |
| FriOI | GRGCYC | 1 cut(s) | 464 |
| Fsp4HI | GCNGC | 2 cut(s) | 342, 530 |
| FspBI | CTAG | 2 cut(s) | 72, 300 |
| GluI | GCNGC | 2 cut(s) | 342, 530 |
| HaeIII | GGCC | 3 cut(s) | 166, 326, 524 |
| HapII | CCGG | 1 cut(s) | 526 |
| Hin1II | CATG | 4 cut(s) | 8, 195, 419, 616 |
| HindIII | AAGCTT | 1 cut(s) | 508 |
| HinfI | GANTC | 2 cut(s) | 77, 392 |
| HpaII | CCGG | 1 cut(s) | 526 |
| HphI | GGTGA | 6 cut(s) | 59, 220, 239, 374, 529, 655 |
| Hpy166II | GTNNAC | 4 cut(s) | 230, 357, 428, 669 |
| Hpy188I | TCNGA | 4 cut(s) | 20, 655, 684, 796 |
| Hpy188III | TCNNGA | 1 cut(s) | 314 |
| Hpy8I | GTNNAC | 4 cut(s) | 230, 357, 428, 669 |
| HpyAV | CCTTC | 6 cut(s) | 359, 469, 473, 508, 634, 683 |
| HpyCH4III | ACNGT | 1 cut(s) | 15 |
| HpyCH4IV | ACGT | 1 cut(s) | 40 |
| HpyCH4V | TGCA | 6 cut(s) | 4, 195, 203, 415, 428, 440 |
| HpyF3I | CTNAG | 1 cut(s) | 582 |
| HpySE526I | ACGT | 1 cut(s) | 40 |
| Hsp92II | CATG | 4 cut(s) | 8, 195, 419, 616 |
| Kzo9I | GATC | 1 cut(s) | 718 |
| LmnI | GCTCC | 1 cut(s) | 459 |
| LpnPI | CCDG | 7 cut(s) | 84, 123, 191, 278, 327, 345, 539 |
| LweI | GCATC | 4 cut(s) | 190, 191, 636, 685 |
| MaeI | CTAG | 2 cut(s) | 72, 300 |
| MaeII | ACGT | 1 cut(s) | 40 |
| MaeIII | GTNAC | 2 cut(s) | 571, 781 |
| MalI | GATC | 1 cut(s) | 720 |
| MboI | GATC | 1 cut(s) | 718 |
| MboII | GAAGA | 6 cut(s) | 177, 401, 505, 578, 624, 783 |
| MfeI | CAATTG | 1 cut(s) | 452 |
| MhlI | GDGCHC | 2 cut(s) | 430, 464 |
| MluCI | AATT | 6 cut(s) | 252, 303, 452, 550, 733, 813 |
| Mph1103I | ATGCAT | 3 cut(s) | 6, 417, 442 |
| MroXI | GAANNNNTTC | 1 cut(s) | 14 |
| MseI | TTAA | 3 cut(s) | 332, 705, 812 |
| MspI | CCGG | 1 cut(s) | 526 |
| MspR9I | CCNGG | 1 cut(s) | 526 |
| MunI | CAATTG | 1 cut(s) | 452 |
| NciI | CCSGG | 1 cut(s) | 526 |
| NdeII | GATC | 1 cut(s) | 718 |
| NlaIII | CATG | 4 cut(s) | 8, 195, 419, 616 |
| NlaIV | GGNNCC | 2 cut(s) | 165, 327 |
| NmuCI | GTSAC | 2 cut(s) | 571, 781 |
| NsiI | ATGCAT | 3 cut(s) | 6, 417, 442 |
| PdmI | GAANNNNTTC | 1 cut(s) | 14 |
| PfeI | GAWTC | 2 cut(s) | 77, 392 |
| PflFI | GACNNNGTC | 1 cut(s) | 787 |
| PkrI | GCNGC | 2 cut(s) | 343, 531 |
| PshAI | GACNNNNGTC | 1 cut(s) | 801 |
| Psp124BI | GAGCTC | 1 cut(s) | 464 |
| PspN4I | GGNNCC | 2 cut(s) | 165, 327 |
| PspPI | GGNCC | 3 cut(s) | 164, 325, 523 |
| PsyI | GACNNNGTC | 1 cut(s) | 787 |
| RsaI | GTAC | 1 cut(s) | 280 |
| RsaNI | GTAC | 1 cut(s) | 279 |
| SacI | GAGCTC | 1 cut(s) | 464 |
| SaqAI | TTAA | 3 cut(s) | 332, 705, 812 |
| SatI | GCNGC | 2 cut(s) | 342, 530 |
| Sau3AI | GATC | 1 cut(s) | 718 |
| Sau96I | GGNCC | 3 cut(s) | 164, 325, 523 |
| ScrFI | CCNGG | 1 cut(s) | 526 |
| SduI | GDGCHC | 2 cut(s) | 430, 464 |
| SfaNI | GCATC | 4 cut(s) | 190, 191, 636, 685 |
| Sse9I | AATT | 6 cut(s) | 252, 303, 452, 550, 733, 813 |
| SsiI | CCGC | 4 cut(s) | 341, 371, 529, 532 |
| SspMI | CTAG | 2 cut(s) | 72, 300 |
| SstI | GAGCTC | 1 cut(s) | 464 |
| StyD4I | CCNGG | 1 cut(s) | 524 |
| TaaI | ACNGT | 1 cut(s) | 15 |
| TaiI | ACGT | 1 cut(s) | 43 |
| TaqI | TCGA | 2 cut(s) | 221, 502 |
| TasI | AATT | 6 cut(s) | 252, 303, 452, 550, 733, 813 |
| TauI | GCSGC | 2 cut(s) | 344, 532 |
| TfiI | GAWTC | 2 cut(s) | 77, 392 |
| Tru1I | TTAA | 3 cut(s) | 332, 705, 812 |
| Tru9I | TTAA | 3 cut(s) | 332, 705, 812 |
| TscAI | CASTG | 2 cut(s) | 87, 156 |
| TseFI | GTSAC | 2 cut(s) | 571, 781 |
| Tsp45I | GTSAC | 2 cut(s) | 571, 781 |
| TspDTI | ATGAA | 1 cut(s) | 579 |
| TspRI | CASTG | 2 cut(s) | 87, 156 |
| Tth111I | GACNNNGTC | 1 cut(s) | 787 |
| VneI | GTGCAC | 1 cut(s) | 426 |
| XapI | RAATTY | 1 cut(s) | 303 |
| XmiI | GTMKAC | 1 cut(s) | 356 |
| XmnI | GAANNNNTTC | 1 cut(s) | 14 |
| XspI | CTAG | 2 cut(s) | 72, 300 |
| Zsp2I | ATGCAT | 3 cut(s) | 6, 417, 442 |