ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 448 |
| AccI | GTMKAC | 1 cut(s) | 259 |
| AclWI | GGATC | 1 cut(s) | 10 |
| AcsI | RAATTY | 1 cut(s) | 480 |
| AcuI | CTGAAG | 1 cut(s) | 32 |
| AfaI | GTAC | 3 cut(s) | 195, 405, 766 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 162, 518, 658, 659 |
| AflIII | ACRYGT | 1 cut(s) | 682 |
| AgsI | TTSAA | 3 cut(s) | 475, 734, 788 |
| AjiI | CACGTC | 1 cut(s) | 257 |
| AjnI | CCWGG | 4 cut(s) | 410, 593, 602, 656 |
| AleI | CACNNNNGTG | 1 cut(s) | 807 |
| AluBI | AGCT | 1 cut(s) | 434 |
| AluI | AGCT | 1 cut(s) | 434 |
| Alw21I | GWGCWC | 1 cut(s) | 690 |
| AlwI | GGATC | 1 cut(s) | 10 |
| Ama87I | CYCGRG | 1 cut(s) | 189 |
| AoxI | GGCC | 1 cut(s) | 509 |
| ApeKI | GCWGC | 3 cut(s) | 386, 389, 524 |
| ApoI | RAATTY | 1 cut(s) | 480 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 307 |
| AspLEI | GCGC | 1 cut(s) | 279 |
| AspS9I | GGNCC | 1 cut(s) | 509 |
| AsuHPI | GGTGA | 5 cut(s) | 82, 177, 592, 682, 821 |
| AvaI | CYCGRG | 1 cut(s) | 189 |
| BaeGI | GKGCMC | 1 cut(s) | 802 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 276, 309 |
| Bbv12I | GWGCWC | 1 cut(s) | 690 |
| BbvI | GCAGC | 3 cut(s) | 373, 376, 536 |
| BccI | CCATC | 2 cut(s) | 164, 206 |
| BceAI | ACGGC | 1 cut(s) | 747 |
| BciT130I | CCWGG | 4 cut(s) | 412, 595, 604, 658 |
| BclI | TGATCA | 1 cut(s) | 712 |
| BfaI | CTAG | 5 cut(s) | 20, 96, 431, 458, 632 |
| BisI | GCNGC | 3 cut(s) | 387, 390, 525 |
| BlsI | GCNGC | 3 cut(s) | 388, 391, 526 |
| Bme1390I | CCNGG | 4 cut(s) | 412, 595, 604, 658 |
| BmeT110I | CYCGRG | 1 cut(s) | 189 |
| BmgBI | CACGTC | 1 cut(s) | 257 |
| BmgT120I | GGNCC | 1 cut(s) | 509 |
| BmiI | GGNNCC | 1 cut(s) | 592 |
| BmrFI | CCNGG | 4 cut(s) | 412, 595, 604, 658 |
| BmsI | GCATC | 3 cut(s) | 52, 134, 334 |
| BpmI | CTGGAG | 2 cut(s) | 114, 414 |
| BsaAI | YACGTR | 1 cut(s) | 197 |
| BsaBI | GATNNNNATC | 2 cut(s) | 564, 717 |
| BsaJI | CCNNGG | 6 cut(s) | 66, 411, 517, 603, 657, 805 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 387, 417 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 162, 518, 658, 659 |
| Bse3DI | GCAATG | 1 cut(s) | 286 |
| Bse8I | GATNNNNATC | 2 cut(s) | 564, 717 |
| BseBI | CCWGG | 4 cut(s) | 412, 595, 604, 658 |
| BseDI | CCNNGG | 6 cut(s) | 66, 411, 517, 603, 657, 805 |
| BseGI | GGATG | 1 cut(s) | 217 |
| BseJI | GATNNNNATC | 2 cut(s) | 564, 717 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 162, 518, 658, 659 |
| BseMI | GCAATG | 1 cut(s) | 286 |
| BseMII | CTCAG | 2 cut(s) | 290, 452 |
| BseSI | GKGCMC | 1 cut(s) | 802 |
| BseXI | GCAGC | 3 cut(s) | 373, 376, 536 |
| BseYI | CCCAGC | 1 cut(s) | 121 |
| BsgI | GTGCAG | 1 cut(s) | 543 |
| BshFI | GGCC | 1 cut(s) | 511 |
| BsiHKAI | GWGCWC | 1 cut(s) | 690 |
| BsiHKCI | CYCGRG | 1 cut(s) | 189 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 162, 518, 658, 659 |
| BsmI | GAATGC | 1 cut(s) | 99 |
| BsnI | GGCC | 1 cut(s) | 511 |
| BsoBI | CYCGRG | 1 cut(s) | 189 |
| Bsp1286I | GDGCHC | 2 cut(s) | 690, 802 |
| Bsp143I | GATC | 4 cut(s) | 15, 251, 565, 712 |
| Bsp19I | CCATGG | 1 cut(s) | 805 |
| BspANI | GGCC | 1 cut(s) | 511 |
| BspCNI | CTCAG | 2 cut(s) | 291, 451 |
| BspLI | GGNNCC | 1 cut(s) | 592 |
| BspPI | GGATC | 1 cut(s) | 10 |
| BsrDI | GCAATG | 1 cut(s) | 286 |
| BssECI | CCNNGG | 6 cut(s) | 66, 411, 517, 603, 657, 805 |
| BssMI | GATC | 4 cut(s) | 15, 251, 565, 712 |
| BssT1I | CCWWGG | 3 cut(s) | 66, 517, 805 |
| Bst2UI | CCWGG | 4 cut(s) | 412, 595, 604, 658 |
| Bst4CI | ACNGT | 3 cut(s) | 225, 638, 777 |
| BstBAI | YACGTR | 1 cut(s) | 197 |
| BstC8I | GCNNGC | 1 cut(s) | 466 |
| BstDEI | CTNAG | 3 cut(s) | 299, 438, 553 |
| BstDSI | CCRYGG | 1 cut(s) | 805 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 516 |
| BstF5I | GGATG | 1 cut(s) | 217 |
| BstHHI | GCGC | 1 cut(s) | 279 |
| BstKTI | GATC | 4 cut(s) | 18, 254, 568, 715 |
| BstMBI | GATC | 4 cut(s) | 15, 251, 565, 712 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 180, 533 |
| BstNI | CCWGG | 4 cut(s) | 412, 595, 604, 658 |
| BstNSI | RCATGY | 1 cut(s) | 686 |
| BstSCI | CCNGG | 4 cut(s) | 410, 593, 602, 656 |
| BstSLI | GKGCMC | 1 cut(s) | 802 |
| BstV1I | GCAGC | 3 cut(s) | 373, 376, 536 |
| BstX2I | RGATCY | 1 cut(s) | 15 |
| BstYI | RGATCY | 1 cut(s) | 15 |
| BsuRI | GGCC | 1 cut(s) | 511 |
| BtgI | CCRYGG | 1 cut(s) | 805 |
| BtrI | CACGTC | 1 cut(s) | 257 |
| BtsCI | GGATG | 1 cut(s) | 217 |
| Cac8I | GCNNGC | 1 cut(s) | 466 |
| CfoI | GCGC | 1 cut(s) | 279 |
| Cfr13I | GGNCC | 1 cut(s) | 509 |
| Csp6I | GTAC | 3 cut(s) | 194, 404, 765 |
| CviAII | CATG | 2 cut(s) | 683, 806 |
| CviJI | RGCY | 8 cut(s) | 174, 434, 457, 511, 551, 591, 608, 631 |
| CviKI_1 | RGCY | 8 cut(s) | 174, 434, 457, 511, 551, 591, 608, 631 |
| CviQI | GTAC | 3 cut(s) | 194, 404, 765 |
| DdeI | CTNAG | 3 cut(s) | 299, 438, 553 |
| DpnI | GATC | 4 cut(s) | 17, 253, 567, 714 |
| DpnII | GATC | 4 cut(s) | 15, 251, 565, 712 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 448 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 448 |
| Eco130I | CCWWGG | 3 cut(s) | 66, 517, 805 |
| Eco57I | CTGAAG | 1 cut(s) | 32 |
| Eco88I | CYCGRG | 1 cut(s) | 189 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 516 |
| EcoO109I | RGGNCCY | 1 cut(s) | 509 |
| EcoRII | CCWGG | 4 cut(s) | 410, 593, 602, 656 |
| EcoT14I | CCWWGG | 3 cut(s) | 66, 517, 805 |
| ErhI | CCWWGG | 3 cut(s) | 66, 517, 805 |
| FaeI | CATG | 2 cut(s) | 686, 809 |
| FatI | CATG | 2 cut(s) | 682, 805 |
| FbaI | TGATCA | 1 cut(s) | 712 |
| FblI | GTMKAC | 1 cut(s) | 259 |
| Fnu4HI | GCNGC | 3 cut(s) | 387, 390, 525 |
| FokI | GGATG | 1 cut(s) | 224 |
| Fsp4HI | GCNGC | 3 cut(s) | 387, 390, 525 |
| FspBI | CTAG | 5 cut(s) | 20, 96, 431, 458, 632 |
| GlaI | GCGC | 1 cut(s) | 278 |
| GluI | GCNGC | 3 cut(s) | 387, 390, 525 |
| GsaI | CCCAGC | 1 cut(s) | 125 |
| GsuI | CTGGAG | 2 cut(s) | 114, 414 |
| HaeIII | GGCC | 1 cut(s) | 511 |
| HhaI | GCGC | 1 cut(s) | 279 |
| Hin1II | CATG | 2 cut(s) | 686, 809 |
| Hin6I | GCGC | 1 cut(s) | 277 |
| HinP1I | GCGC | 1 cut(s) | 277 |
| HincII | GTYRAC | 2 cut(s) | 260, 739 |
| HindII | GTYRAC | 2 cut(s) | 260, 739 |
| HinfI | GANTC | 2 cut(s) | 200, 703 |
| HpaI | GTTAAC | 1 cut(s) | 739 |
| HphI | GGTGA | 5 cut(s) | 82, 177, 592, 682, 821 |
| Hpy166II | GTNNAC | 4 cut(s) | 260, 600, 739, 767 |
| Hpy188I | TCNGA | 7 cut(s) | 115, 205, 238, 441, 712, 745, 831 |
| Hpy188III | TCNNGA | 2 cut(s) | 25, 131 |
| Hpy8I | GTNNAC | 4 cut(s) | 260, 600, 739, 767 |
| Hpy99I | CGWCG | 1 cut(s) | 261 |
| HpyAV | CCTTC | 3 cut(s) | 139, 367, 826 |
| HpyCH4III | ACNGT | 3 cut(s) | 225, 638, 777 |
| HpyCH4IV | ACGT | 2 cut(s) | 196, 256 |
| HpyCH4V | TGCA | 2 cut(s) | 494, 524 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 180, 533 |
| HpyF3I | CTNAG | 3 cut(s) | 299, 438, 553 |
| HpySE526I | ACGT | 2 cut(s) | 196, 256 |
| Hsp92II | CATG | 2 cut(s) | 686, 809 |
| HspAI | GCGC | 1 cut(s) | 277 |
| Ksp22I | TGATCA | 1 cut(s) | 712 |
| KspAI | GTTAAC | 1 cut(s) | 739 |
| Kzo9I | GATC | 4 cut(s) | 15, 251, 565, 712 |
| LmnI | GCTCC | 2 cut(s) | 205, 596 |
| Lsp1109I | GCAGC | 3 cut(s) | 373, 376, 536 |
| LweI | GCATC | 3 cut(s) | 52, 134, 334 |
| MaeI | CTAG | 5 cut(s) | 20, 96, 431, 458, 632 |
| MaeII | ACGT | 2 cut(s) | 196, 256 |
| MaeIII | GTNAC | 3 cut(s) | 225, 704, 809 |
| MalI | GATC | 4 cut(s) | 17, 253, 567, 714 |
| MboI | GATC | 4 cut(s) | 15, 251, 565, 712 |
| MboII | GAAGA | 3 cut(s) | 25, 353, 800 |
| MflI | RGATCY | 1 cut(s) | 15 |
| MhlI | GDGCHC | 2 cut(s) | 690, 802 |
| MluCI | AATT | 7 cut(s) | 28, 232, 304, 349, 480, 615, 746 |
| MlyI | GAGTC | 1 cut(s) | 712 |
| MnlI | CCTC | 4 cut(s) | 500, 522, 621, 732 |
| MroXI | GAANNNNTTC | 1 cut(s) | 307 |
| MseI | TTAA | 3 cut(s) | 422, 485, 738 |
| MslI | CAYNNNNRTG | 2 cut(s) | 324, 807 |
| MspR9I | CCNGG | 4 cut(s) | 412, 595, 604, 658 |
| Mva1269I | GAATGC | 1 cut(s) | 99 |
| MvaI | CCWGG | 4 cut(s) | 412, 595, 604, 658 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 180, 533 |
| NcoI | CCATGG | 1 cut(s) | 805 |
| NdeII | GATC | 4 cut(s) | 15, 251, 565, 712 |
| NlaIII | CATG | 2 cut(s) | 686, 809 |
| NlaIV | GGNNCC | 1 cut(s) | 592 |
| NmuCI | GTSAC | 2 cut(s) | 704, 809 |
| NspI | RCATGY | 1 cut(s) | 686 |
| OliI | CACNNNNGTG | 1 cut(s) | 807 |
| PciI | ACATGT | 1 cut(s) | 682 |
| PctI | GAATGC | 1 cut(s) | 99 |
| PdmI | GAANNNNTTC | 1 cut(s) | 307 |
| PfeI | GAWTC | 1 cut(s) | 200 |
| PkrI | GCNGC | 3 cut(s) | 388, 391, 526 |
| PleI | GAGTC | 1 cut(s) | 711 |
| PpsI | GAGTC | 1 cut(s) | 711 |
| Ppu21I | YACGTR | 1 cut(s) | 197 |
| PscI | ACATGT | 1 cut(s) | 682 |
| Psp6I | CCWGG | 4 cut(s) | 410, 593, 602, 656 |
| PspFI | CCCAGC | 1 cut(s) | 121 |
| PspGI | CCWGG | 4 cut(s) | 410, 593, 602, 656 |
| PspN4I | GGNNCC | 1 cut(s) | 592 |
| PspPI | GGNCC | 1 cut(s) | 509 |
| PsuI | RGATCY | 1 cut(s) | 15 |
| RsaI | GTAC | 3 cut(s) | 195, 405, 766 |
| RsaNI | GTAC | 3 cut(s) | 194, 404, 765 |
| RseI | CAYNNNNRTG | 2 cut(s) | 324, 807 |
| SalI | GTCGAC | 1 cut(s) | 258 |
| SaqAI | TTAA | 3 cut(s) | 422, 485, 738 |
| SatI | GCNGC | 3 cut(s) | 387, 390, 525 |
| Sau3AI | GATC | 4 cut(s) | 15, 251, 565, 712 |
| Sau96I | GGNCC | 1 cut(s) | 509 |
| SchI | GAGTC | 1 cut(s) | 712 |
| ScrFI | CCNGG | 4 cut(s) | 412, 595, 604, 658 |
| SduI | GDGCHC | 2 cut(s) | 690, 802 |
| SfaNI | GCATC | 3 cut(s) | 52, 134, 334 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 324, 807 |
| Sse9I | AATT | 7 cut(s) | 28, 232, 304, 349, 480, 615, 746 |
| SspMI | CTAG | 5 cut(s) | 20, 96, 431, 458, 632 |
| StyD4I | CCNGG | 4 cut(s) | 410, 593, 602, 656 |
| StyI | CCWWGG | 3 cut(s) | 66, 517, 805 |
| TaaI | ACNGT | 3 cut(s) | 225, 638, 777 |
| TaiI | ACGT | 2 cut(s) | 199, 259 |
| TaqI | TCGA | 2 cut(s) | 82, 259 |
| TasI | AATT | 7 cut(s) | 28, 232, 304, 349, 480, 615, 746 |
| TfiI | GAWTC | 1 cut(s) | 200 |
| Tru1I | TTAA | 3 cut(s) | 422, 485, 738 |
| Tru9I | TTAA | 3 cut(s) | 422, 485, 738 |
| TseFI | GTSAC | 2 cut(s) | 704, 809 |
| TseI | GCWGC | 3 cut(s) | 386, 389, 524 |
| Tsp45I | GTSAC | 2 cut(s) | 704, 809 |
| TspDTI | ATGAA | 3 cut(s) | 207, 355, 492 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 516 |
| XapI | RAATTY | 1 cut(s) | 480 |
| XceI | RCATGY | 1 cut(s) | 686 |
| XmiI | GTMKAC | 1 cut(s) | 259 |
| XmnI | GAANNNNTTC | 1 cut(s) | 307 |
| XspI | CTAG | 5 cut(s) | 20, 96, 431, 458, 632 |