ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Exo_endo_phos | PF03372 | 57 - 173 | 1.7e-08 | Endonuclease/Exonuclease/phosphatase family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 2 cut(s) | 108, 163 |
| AciI | CCGC | 2 cut(s) | 462, 503 |
| AcsI | RAATTY | 1 cut(s) | 860 |
| AcuI | CTGAAG | 2 cut(s) | 20, 663 |
| AfaI | GTAC | 2 cut(s) | 799, 813 |
| AflIII | ACRYGT | 1 cut(s) | 493 |
| AgsI | TTSAA | 4 cut(s) | 145, 593, 599, 766 |
| AjnI | CCWGG | 1 cut(s) | 254 |
| AluBI | AGCT | 3 cut(s) | 133, 509, 688 |
| AluI | AGCT | 3 cut(s) | 133, 509, 688 |
| Alw26I | GTCTC | 1 cut(s) | 123 |
| AoxI | GGCC | 5 cut(s) | 39, 155, 391, 459, 785 |
| ApaI | GGGCCC | 1 cut(s) | 395 |
| ApeKI | GCWGC | 2 cut(s) | 98, 236 |
| ApoI | RAATTY | 1 cut(s) | 860 |
| AseI | ATTAAT | 1 cut(s) | 450 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 73, 341 |
| AspLEI | GCGC | 3 cut(s) | 98, 163, 165 |
| AspS9I | GGNCC | 5 cut(s) | 155, 251, 391, 392, 459 |
| AsuHPI | GGTGA | 1 cut(s) | 308 |
| AvaII | GGWCC | 1 cut(s) | 251 |
| AxyI | CCTNAGG | 1 cut(s) | 709 |
| BaeGI | GKGCMC | 1 cut(s) | 395 |
| BanII | GRGCYC | 2 cut(s) | 314, 395 |
| BbvI | GCAGC | 2 cut(s) | 110, 223 |
| BccI | CCATC | 4 cut(s) | 198, 287, 536, 850 |
| BciT130I | CCWGG | 1 cut(s) | 256 |
| BcoDI | GTCTC | 1 cut(s) | 123 |
| BfmI | CTRYAG | 2 cut(s) | 134, 689 |
| BisI | GCNGC | 3 cut(s) | 99, 237, 462 |
| BlsI | GCNGC | 3 cut(s) | 100, 238, 463 |
| Bme1390I | CCNGG | 1 cut(s) | 256 |
| Bme18I | GGWCC | 1 cut(s) | 251 |
| BmgT120I | GGNCC | 5 cut(s) | 155, 251, 391, 392, 459 |
| BmiI | GGNNCC | 6 cut(s) | 156, 252, 253, 313, 393, 460 |
| BmrFI | CCNGG | 1 cut(s) | 256 |
| BmsI | GCATC | 1 cut(s) | 490 |
| BsaI | GGTCTC | 1 cut(s) | 123 |
| BsaJI | CCNNGG | 2 cut(s) | 254, 746 |
| Bse118I | RCCGGY | 1 cut(s) | 582 |
| Bse21I | CCTNAGG | 1 cut(s) | 709 |
| Bse3DI | GCAATG | 2 cut(s) | 565, 722 |
| BseBI | CCWGG | 1 cut(s) | 256 |
| BseDI | CCNNGG | 2 cut(s) | 254, 746 |
| BseGI | GGATG | 5 cut(s) | 382, 505, 547, 741, 808 |
| BseMI | GCAATG | 2 cut(s) | 565, 722 |
| BsePI | GCGCGC | 1 cut(s) | 161 |
| BseRI | GAGGAG | 1 cut(s) | 424 |
| BseSI | GKGCMC | 1 cut(s) | 395 |
| BseXI | GCAGC | 2 cut(s) | 110, 223 |
| Bsh1236I | CGCG | 2 cut(s) | 108, 163 |
| BshFI | GGCC | 5 cut(s) | 41, 157, 393, 461, 787 |
| BsiSI | CCGG | 1 cut(s) | 583 |
| BslFI | GGGAC | 3 cut(s) | 61, 264, 284 |
| BsmAI | GTCTC | 1 cut(s) | 123 |
| BsmFI | GGGAC | 3 cut(s) | 61, 264, 284 |
| BsmI | GAATGC | 1 cut(s) | 480 |
| BsnI | GGCC | 5 cut(s) | 41, 157, 393, 461, 787 |
| Bso31I | GGTCTC | 1 cut(s) | 123 |
| Bsp120I | GGGCCC | 1 cut(s) | 391 |
| Bsp1286I | GDGCHC | 2 cut(s) | 314, 395 |
| Bsp1407I | TGTACA | 1 cut(s) | 811 |
| Bsp143I | GATC | 1 cut(s) | 103 |
| Bsp19I | CCATGG | 1 cut(s) | 746 |
| BspACI | CCGC | 2 cut(s) | 462, 503 |
| BspANI | GGCC | 5 cut(s) | 41, 157, 393, 461, 787 |
| BspFNI | CGCG | 2 cut(s) | 108, 163 |
| BspHI | TCATGA | 1 cut(s) | 484 |
| BspLI | GGNNCC | 6 cut(s) | 156, 252, 253, 313, 393, 460 |
| BspTNI | GGTCTC | 1 cut(s) | 123 |
| BsrDI | GCAATG | 2 cut(s) | 565, 722 |
| BsrFI | RCCGGY | 1 cut(s) | 582 |
| BsrGI | TGTACA | 1 cut(s) | 811 |
| BssAI | RCCGGY | 1 cut(s) | 582 |
| BssECI | CCNNGG | 2 cut(s) | 254, 746 |
| BssHII | GCGCGC | 1 cut(s) | 161 |
| BssMI | GATC | 1 cut(s) | 103 |
| BssT1I | CCWWGG | 1 cut(s) | 746 |
| Bst2UI | CCWGG | 1 cut(s) | 256 |
| Bst4CI | ACNGT | 2 cut(s) | 244, 365 |
| Bst6I | CTCTTC | 2 cut(s) | 7, 612 |
| BstAUI | TGTACA | 1 cut(s) | 811 |
| BstC8I | GCNNGC | 3 cut(s) | 159, 163, 705 |
| BstDEI | CTNAG | 3 cut(s) | 287, 684, 709 |
| BstDSI | CCRYGG | 1 cut(s) | 746 |
| BstF5I | GGATG | 5 cut(s) | 382, 505, 547, 741, 808 |
| BstFNI | CGCG | 2 cut(s) | 108, 163 |
| BstHHI | GCGC | 3 cut(s) | 98, 163, 165 |
| BstKTI | GATC | 1 cut(s) | 106 |
| BstMAI | GTCTC | 1 cut(s) | 123 |
| BstMBI | GATC | 1 cut(s) | 103 |
| BstNI | CCWGG | 1 cut(s) | 256 |
| BstNSI | RCATGY | 1 cut(s) | 497 |
| BstSCI | CCNGG | 1 cut(s) | 254 |
| BstSFI | CTRYAG | 2 cut(s) | 134, 689 |
| BstSLI | GKGCMC | 1 cut(s) | 395 |
| BstUI | CGCG | 2 cut(s) | 108, 163 |
| BstV1I | GCAGC | 2 cut(s) | 110, 223 |
| Bsu36I | CCTNAGG | 1 cut(s) | 709 |
| BsuRI | GGCC | 5 cut(s) | 41, 157, 393, 461, 787 |
| BtgI | CCRYGG | 1 cut(s) | 746 |
| BtsCI | GGATG | 5 cut(s) | 382, 505, 547, 741, 808 |
| Cac8I | GCNNGC | 3 cut(s) | 159, 163, 705 |
| CciI | TCATGA | 1 cut(s) | 484 |
| CfoI | GCGC | 3 cut(s) | 98, 163, 165 |
| Cfr10I | RCCGGY | 1 cut(s) | 582 |
| Cfr13I | GGNCC | 5 cut(s) | 155, 251, 391, 392, 459 |
| Csp6I | GTAC | 2 cut(s) | 798, 812 |
| CviAII | CATG | 3 cut(s) | 485, 494, 747 |
| CviQI | GTAC | 2 cut(s) | 798, 812 |
| DdeI | CTNAG | 3 cut(s) | 287, 684, 709 |
| DpnI | GATC | 1 cut(s) | 105 |
| DpnII | GATC | 1 cut(s) | 103 |
| Eam1104I | CTCTTC | 2 cut(s) | 7, 612 |
| EarI | CTCTTC | 2 cut(s) | 7, 612 |
| Eco130I | CCWWGG | 1 cut(s) | 746 |
| Eco24I | GRGCYC | 2 cut(s) | 314, 395 |
| Eco31I | GGTCTC | 1 cut(s) | 123 |
| Eco47I | GGWCC | 1 cut(s) | 251 |
| Eco57I | CTGAAG | 2 cut(s) | 20, 663 |
| Eco81I | CCTNAGG | 1 cut(s) | 709 |
| EcoO109I | RGGNCCY | 1 cut(s) | 251 |
| EcoRII | CCWGG | 1 cut(s) | 254 |
| EcoT14I | CCWWGG | 1 cut(s) | 746 |
| EcoT38I | GRGCYC | 2 cut(s) | 314, 395 |
| ErhI | CCWWGG | 1 cut(s) | 746 |
| FaeI | CATG | 3 cut(s) | 488, 497, 750 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 61, 93 |
| FaqI | GGGAC | 3 cut(s) | 61, 264, 284 |
| FatI | CATG | 3 cut(s) | 484, 493, 746 |
| FauI | CCCGC | 1 cut(s) | 496 |
| Fnu4HI | GCNGC | 3 cut(s) | 99, 237, 462 |
| FokI | GGATG | 5 cut(s) | 389, 512, 554, 728, 815 |
| FriOI | GRGCYC | 2 cut(s) | 314, 395 |
| Fsp4HI | GCNGC | 3 cut(s) | 99, 237, 462 |
| GlaI | GCGC | 3 cut(s) | 97, 162, 164 |
| GluI | GCNGC | 3 cut(s) | 99, 237, 462 |
| HaeIII | GGCC | 5 cut(s) | 41, 157, 393, 461, 787 |
| HapII | CCGG | 1 cut(s) | 583 |
| HhaI | GCGC | 3 cut(s) | 98, 163, 165 |
| Hin1II | CATG | 3 cut(s) | 488, 497, 750 |
| Hin6I | GCGC | 3 cut(s) | 96, 161, 163 |
| HinP1I | GCGC | 3 cut(s) | 96, 161, 163 |
| HinfI | GANTC | 2 cut(s) | 191, 326 |
| HpaII | CCGG | 1 cut(s) | 583 |
| HphI | GGTGA | 1 cut(s) | 308 |
| Hpy166II | GTNNAC | 2 cut(s) | 371, 812 |
| Hpy188I | TCNGA | 1 cut(s) | 514 |
| Hpy188III | TCNNGA | 4 cut(s) | 20, 485, 607, 839 |
| Hpy8I | GTNNAC | 2 cut(s) | 371, 812 |
| HpyAV | CCTTC | 7 cut(s) | 44, 59, 63, 298, 568, 607, 688 |
| HpyCH4III | ACNGT | 2 cut(s) | 244, 365 |
| HpyCH4V | TGCA | 1 cut(s) | 480 |
| HpyF3I | CTNAG | 3 cut(s) | 287, 684, 709 |
| Hsp92II | CATG | 3 cut(s) | 488, 497, 750 |
| HspAI | GCGC | 3 cut(s) | 96, 161, 163 |
| KflI | GGGWCCC | 1 cut(s) | 251 |
| Kzo9I | GATC | 1 cut(s) | 103 |
| LmnI | GCTCC | 2 cut(s) | 317, 506 |
| Lsp1109I | GCAGC | 2 cut(s) | 110, 223 |
| LweI | GCATC | 1 cut(s) | 490 |
| MaeIII | GTNAC | 5 cut(s) | 219, 327, 679, 774, 843 |
| MalI | GATC | 1 cut(s) | 105 |
| MboI | GATC | 1 cut(s) | 103 |
| MboII | GAAGA | 5 cut(s) | 24, 313, 349, 629, 643 |
| MhlI | GDGCHC | 2 cut(s) | 314, 395 |
| MluCI | AATT | 8 cut(s) | 23, 196, 231, 281, 587, 593, 781, 860 |
| MlyI | GAGTC | 1 cut(s) | 335 |
| MmeI | TCCRAC | 2 cut(s) | 63, 537 |
| MroXI | GAANNNNTTC | 2 cut(s) | 73, 341 |
| MseI | TTAA | 2 cut(s) | 276, 450 |
| MslI | CAYNNNNRTG | 1 cut(s) | 498 |
| MspA1I | CMGCKG | 1 cut(s) | 464 |
| MspI | CCGG | 1 cut(s) | 583 |
| MspR9I | CCNGG | 1 cut(s) | 256 |
| Mva1269I | GAATGC | 1 cut(s) | 480 |
| MvaI | CCWGG | 1 cut(s) | 256 |
| MvnI | CGCG | 2 cut(s) | 108, 163 |
| NcoI | CCATGG | 1 cut(s) | 746 |
| NdeII | GATC | 1 cut(s) | 103 |
| NlaIII | CATG | 3 cut(s) | 488, 497, 750 |
| NlaIV | GGNNCC | 6 cut(s) | 156, 252, 253, 313, 393, 460 |
| NmuCI | GTSAC | 1 cut(s) | 327 |
| NspI | RCATGY | 1 cut(s) | 497 |
| PagI | TCATGA | 1 cut(s) | 484 |
| PauI | GCGCGC | 1 cut(s) | 161 |
| PciI | ACATGT | 1 cut(s) | 493 |
| PctI | GAATGC | 1 cut(s) | 480 |
| PdmI | GAANNNNTTC | 2 cut(s) | 73, 341 |
| PfeI | GAWTC | 1 cut(s) | 191 |
| PkrI | GCNGC | 3 cut(s) | 100, 238, 463 |
| PleI | GAGTC | 1 cut(s) | 334 |
| PpsI | GAGTC | 1 cut(s) | 334 |
| PpuMI | RGGWCCY | 1 cut(s) | 251 |
| PscI | ACATGT | 1 cut(s) | 493 |
| PshBI | ATTAAT | 1 cut(s) | 450 |
| Psp5II | RGGWCCY | 1 cut(s) | 251 |
| Psp6I | CCWGG | 1 cut(s) | 254 |
| PspGI | CCWGG | 1 cut(s) | 254 |
| PspN4I | GGNNCC | 6 cut(s) | 156, 252, 253, 313, 393, 460 |
| PspOMI | GGGCCC | 1 cut(s) | 391 |
| PspPI | GGNCC | 5 cut(s) | 155, 251, 391, 392, 459 |
| PspPPI | RGGWCCY | 1 cut(s) | 251 |
| PteI | GCGCGC | 1 cut(s) | 161 |
| RsaI | GTAC | 2 cut(s) | 799, 813 |
| RsaNI | GTAC | 2 cut(s) | 798, 812 |
| RseI | CAYNNNNRTG | 1 cut(s) | 498 |
| SaqAI | TTAA | 2 cut(s) | 276, 450 |
| SatI | GCNGC | 3 cut(s) | 99, 237, 462 |
| Sau3AI | GATC | 1 cut(s) | 103 |
| Sau96I | GGNCC | 5 cut(s) | 155, 251, 391, 392, 459 |
| SchI | GAGTC | 1 cut(s) | 335 |
| ScrFI | CCNGG | 1 cut(s) | 256 |
| SduI | GDGCHC | 2 cut(s) | 314, 395 |
| SetI | ASST | 9 cut(s) | 90, 135, 150, 387, 443, 511, 624, 690, 699 |
| SfaNI | GCATC | 1 cut(s) | 490 |
| SfcI | CTRYAG | 2 cut(s) | 134, 689 |
| SinI | GGWCC | 1 cut(s) | 251 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 498 |
| Sse9I | AATT | 8 cut(s) | 23, 196, 231, 281, 587, 593, 781, 860 |
| SsiI | CCGC | 2 cut(s) | 462, 503 |
| SspI | AATATT | 1 cut(s) | 264 |
| StyD4I | CCNGG | 1 cut(s) | 254 |
| StyI | CCWWGG | 1 cut(s) | 746 |
| TaaI | ACNGT | 2 cut(s) | 244, 365 |
| TaqI | TCGA | 4 cut(s) | 10, 90, 381, 830 |
| TaqII | GACCGA | 1 cut(s) | 105 |
| TasI | AATT | 8 cut(s) | 23, 196, 231, 281, 587, 593, 781, 860 |
| TatI | WGTACW | 1 cut(s) | 811 |
| TauI | GCSGC | 1 cut(s) | 464 |
| TfiI | GAWTC | 1 cut(s) | 191 |
| Tru1I | TTAA | 2 cut(s) | 276, 450 |
| Tru9I | TTAA | 2 cut(s) | 276, 450 |
| TseFI | GTSAC | 1 cut(s) | 327 |
| TseI | GCWGC | 2 cut(s) | 98, 236 |
| Tsp45I | GTSAC | 1 cut(s) | 327 |
| TspDTI | ATGAA | 5 cut(s) | 294, 334, 350, 473, 501 |
| TspGWI | ACGGA | 1 cut(s) | 815 |
| VpaK11BI | GGWCC | 1 cut(s) | 251 |
| VspI | ATTAAT | 1 cut(s) | 450 |
| XapI | RAATTY | 1 cut(s) | 860 |
| XceI | RCATGY | 1 cut(s) | 497 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 402 |
| XmnI | GAANNNNTTC | 2 cut(s) | 73, 341 |