ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 319 |
| AccII | CGCG | 1 cut(s) | 310 |
| AciI | CCGC | 3 cut(s) | 227, 308, 328 |
| AclWI | GGATC | 1 cut(s) | 887 |
| AcoI | YGGCCR | 1 cut(s) | 714 |
| AcsI | RAATTY | 2 cut(s) | 484, 856 |
| AcyI | GRCGYC | 1 cut(s) | 320 |
| AfaI | GTAC | 1 cut(s) | 730 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 63, 479 |
| AgsI | TTSAA | 9 cut(s) | 91, 268, 413, 477, 508, 560, 590, 724, 816 |
| AjnI | CCWGG | 2 cut(s) | 495, 823 |
| Alw26I | GTCTC | 2 cut(s) | 471, 512 |
| AlwI | GGATC | 1 cut(s) | 887 |
| AoxI | GGCC | 5 cut(s) | 54, 305, 470, 639, 714 |
| ApeKI | GCWGC | 3 cut(s) | 15, 361, 615 |
| ApoI | RAATTY | 2 cut(s) | 484, 856 |
| AseI | ATTAAT | 1 cut(s) | 212 |
| AspLEI | GCGC | 2 cut(s) | 156, 322 |
| AspS9I | GGNCC | 2 cut(s) | 399, 827 |
| AsuC2I | CCSGG | 1 cut(s) | 718 |
| AsuHPI | GGTGA | 2 cut(s) | 272, 745 |
| AvaII | GGWCC | 2 cut(s) | 399, 827 |
| AxyI | CCTNAGG | 1 cut(s) | 897 |
| BaeGI | GKGCMC | 1 cut(s) | 427 |
| BanI | GGYRCC | 1 cut(s) | 319 |
| BbsI | GAAGAC | 1 cut(s) | 98 |
| BbvI | GCAGC | 3 cut(s) | 2, 348, 627 |
| BccI | CCATC | 6 cut(s) | 61, 189, 247, 592, 596, 650 |
| BciT130I | CCWGG | 2 cut(s) | 497, 825 |
| BcnI | CCSGG | 1 cut(s) | 718 |
| BcoDI | GTCTC | 2 cut(s) | 471, 512 |
| BfaI | CTAG | 3 cut(s) | 224, 345, 681 |
| BfoI | RGCGCY | 2 cut(s) | 157, 323 |
| BisI | GCNGC | 5 cut(s) | 16, 228, 308, 362, 616 |
| BlsI | GCNGC | 5 cut(s) | 17, 229, 309, 363, 617 |
| Bme1390I | CCNGG | 3 cut(s) | 497, 718, 825 |
| Bme18I | GGWCC | 2 cut(s) | 399, 827 |
| BmgT120I | GGNCC | 2 cut(s) | 399, 827 |
| BmiI | GGNNCC | 1 cut(s) | 321 |
| BmrFI | CCNGG | 3 cut(s) | 497, 718, 825 |
| BmrI | ACTGGG | 1 cut(s) | 171 |
| BmsI | GCATC | 3 cut(s) | 106, 795, 892 |
| BmuI | ACTGGG | 1 cut(s) | 171 |
| BpiI | GAAGAC | 1 cut(s) | 98 |
| BpuMI | CCSGG | 1 cut(s) | 718 |
| BsaHI | GRCGYC | 1 cut(s) | 320 |
| BsaI | GGTCTC | 1 cut(s) | 471 |
| BsaJI | CCNNGG | 1 cut(s) | 245 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 507, 537 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 63, 479 |
| Bse1I | ACTGG | 1 cut(s) | 166 |
| Bse21I | CCTNAGG | 1 cut(s) | 897 |
| Bse3DI | GCAATG | 1 cut(s) | 18 |
| BseBI | CCWGG | 2 cut(s) | 497, 825 |
| BseDI | CCNNGG | 1 cut(s) | 245 |
| BseGI | GGATG | 8 cut(s) | 72, 292, 305, 336, 607, 694, 781, 907 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 63, 479 |
| BseMI | GCAATG | 1 cut(s) | 18 |
| BseMII | CTCAG | 3 cut(s) | 135, 617, 911 |
| BseNI | ACTGG | 1 cut(s) | 166 |
| BseRI | GAGGAG | 3 cut(s) | 677, 707, 794 |
| BseSI | GKGCMC | 1 cut(s) | 427 |
| BseXI | GCAGC | 3 cut(s) | 2, 348, 627 |
| BsgI | GTGCAG | 1 cut(s) | 333 |
| Bsh1236I | CGCG | 1 cut(s) | 310 |
| BshFI | GGCC | 5 cut(s) | 56, 307, 472, 641, 716 |
| BshNI | GGYRCC | 1 cut(s) | 319 |
| BsiSI | CCGG | 1 cut(s) | 717 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 63, 479 |
| BsmAI | GTCTC | 2 cut(s) | 471, 512 |
| BsnI | GGCC | 5 cut(s) | 56, 307, 472, 641, 716 |
| Bso31I | GGTCTC | 1 cut(s) | 471 |
| Bsp1286I | GDGCHC | 1 cut(s) | 427 |
| Bsp143I | GATC | 1 cut(s) | 892 |
| BspACI | CCGC | 3 cut(s) | 227, 308, 328 |
| BspANI | GGCC | 5 cut(s) | 56, 307, 472, 641, 716 |
| BspCNI | CTCAG | 3 cut(s) | 136, 618, 910 |
| BspFNI | CGCG | 1 cut(s) | 310 |
| BspLI | GGNNCC | 1 cut(s) | 321 |
| BspPI | GGATC | 1 cut(s) | 887 |
| BspT107I | GGYRCC | 1 cut(s) | 319 |
| BspTNI | GGTCTC | 1 cut(s) | 471 |
| BsrDI | GCAATG | 1 cut(s) | 18 |
| BsrI | ACTGG | 1 cut(s) | 166 |
| BssECI | CCNNGG | 1 cut(s) | 245 |
| BssMI | GATC | 1 cut(s) | 892 |
| BssNI | GRCGYC | 1 cut(s) | 320 |
| BssT1I | CCWWGG | 1 cut(s) | 245 |
| Bst2UI | CCWGG | 2 cut(s) | 497, 825 |
| Bst4CI | ACNGT | 4 cut(s) | 173, 440, 523, 733 |
| Bst6I | CTCTTC | 1 cut(s) | 408 |
| BstACI | GRCGYC | 1 cut(s) | 320 |
| BstC8I | GCNNGC | 2 cut(s) | 13, 312 |
| BstDEI | CTNAG | 3 cut(s) | 144, 626, 897 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 477 |
| BstF5I | GGATG | 8 cut(s) | 72, 292, 305, 336, 607, 694, 781, 907 |
| BstFNI | CGCG | 1 cut(s) | 310 |
| BstH2I | RGCGCY | 2 cut(s) | 157, 323 |
| BstHHI | GCGC | 2 cut(s) | 156, 322 |
| BstKTI | GATC | 1 cut(s) | 895 |
| BstMAI | GTCTC | 2 cut(s) | 471, 512 |
| BstMBI | GATC | 1 cut(s) | 892 |
| BstNI | CCWGG | 2 cut(s) | 497, 825 |
| BstNSI | RCATGY | 1 cut(s) | 566 |
| BstSCI | CCNGG | 3 cut(s) | 495, 716, 823 |
| BstSLI | GKGCMC | 1 cut(s) | 427 |
| BstUI | CGCG | 1 cut(s) | 310 |
| BstV1I | GCAGC | 3 cut(s) | 2, 348, 627 |
| BstV2I | GAAGAC | 1 cut(s) | 98 |
| BstX2I | RGATCY | 1 cut(s) | 892 |
| BstYI | RGATCY | 1 cut(s) | 892 |
| Bsu36I | CCTNAGG | 1 cut(s) | 897 |
| BsuRI | GGCC | 5 cut(s) | 56, 307, 472, 641, 716 |
| BtsCI | GGATG | 8 cut(s) | 72, 292, 305, 336, 607, 694, 781, 907 |
| BtsI | GCAGTG | 1 cut(s) | 321 |
| BtsIMutI | CAGTG | 2 cut(s) | 321, 737 |
| Cac8I | GCNNGC | 2 cut(s) | 13, 312 |
| CfoI | GCGC | 2 cut(s) | 156, 322 |
| Cfr13I | GGNCC | 2 cut(s) | 399, 827 |
| CsiI | ACCWGGT | 1 cut(s) | 495 |
| Csp6I | GTAC | 1 cut(s) | 729 |
| CviAII | CATG | 2 cut(s) | 30, 563 |
| CviQI | GTAC | 1 cut(s) | 729 |
| DdeI | CTNAG | 3 cut(s) | 144, 626, 897 |
| DinI | GGCGCC | 1 cut(s) | 321 |
| DpnI | GATC | 1 cut(s) | 894 |
| DpnII | GATC | 1 cut(s) | 892 |
| EaeI | YGGCCR | 1 cut(s) | 714 |
| Eam1104I | CTCTTC | 1 cut(s) | 408 |
| EarI | CTCTTC | 1 cut(s) | 408 |
| Eco130I | CCWWGG | 1 cut(s) | 245 |
| Eco31I | GGTCTC | 1 cut(s) | 471 |
| Eco47I | GGWCC | 2 cut(s) | 399, 827 |
| Eco81I | CCTNAGG | 1 cut(s) | 897 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 477 |
| EcoRI | GAATTC | 1 cut(s) | 484 |
| EcoRII | CCWGG | 2 cut(s) | 495, 823 |
| EcoT14I | CCWWGG | 1 cut(s) | 245 |
| EgeI | GGCGCC | 1 cut(s) | 321 |
| EheI | GGCGCC | 1 cut(s) | 321 |
| ErhI | CCWWGG | 1 cut(s) | 245 |
| FaeI | CATG | 2 cut(s) | 33, 566 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 629, 661 |
| FatI | CATG | 2 cut(s) | 29, 562 |
| Fnu4HI | GCNGC | 5 cut(s) | 16, 228, 308, 362, 616 |
| FokI | GGATG | 7 cut(s) | 79, 299, 312, 343, 614, 701, 788 |
| Fsp4HI | GCNGC | 5 cut(s) | 16, 228, 308, 362, 616 |
| FspBI | CTAG | 3 cut(s) | 224, 345, 681 |
| GlaI | GCGC | 2 cut(s) | 155, 321 |
| GluI | GCNGC | 5 cut(s) | 16, 228, 308, 362, 616 |
| HaeII | RGCGCY | 2 cut(s) | 157, 323 |
| HaeIII | GGCC | 5 cut(s) | 56, 307, 472, 641, 716 |
| HapII | CCGG | 1 cut(s) | 717 |
| HhaI | GCGC | 2 cut(s) | 156, 322 |
| Hin1I | GRCGYC | 1 cut(s) | 320 |
| Hin1II | CATG | 2 cut(s) | 33, 566 |
| Hin6I | GCGC | 2 cut(s) | 154, 320 |
| HinP1I | GCGC | 2 cut(s) | 154, 320 |
| HincII | GTYRAC | 1 cut(s) | 191 |
| HindII | GTYRAC | 1 cut(s) | 191 |
| HinfI | GANTC | 6 cut(s) | 41, 586, 630, 820, 851, 877 |
| HpaII | CCGG | 1 cut(s) | 717 |
| HphI | GGTGA | 2 cut(s) | 272, 745 |
| Hpy166II | GTNNAC | 1 cut(s) | 191 |
| Hpy188I | TCNGA | 4 cut(s) | 145, 338, 627, 775 |
| Hpy188III | TCNNGA | 5 cut(s) | 297, 590, 704, 802, 899 |
| Hpy8I | GTNNAC | 1 cut(s) | 191 |
| HpyAV | CCTTC | 2 cut(s) | 483, 822 |
| HpyCH4III | ACNGT | 4 cut(s) | 173, 440, 523, 733 |
| HpyCH4V | TGCA | 6 cut(s) | 11, 18, 119, 314, 566, 808 |
| HpyF3I | CTNAG | 3 cut(s) | 144, 626, 897 |
| Hsp92I | GRCGYC | 1 cut(s) | 320 |
| Hsp92II | CATG | 2 cut(s) | 33, 566 |
| HspAI | GCGC | 2 cut(s) | 154, 320 |
| KasI | GGCGCC | 1 cut(s) | 319 |
| Kzo9I | GATC | 1 cut(s) | 892 |
| Lsp1109I | GCAGC | 3 cut(s) | 2, 348, 627 |
| LweI | GCATC | 3 cut(s) | 106, 795, 892 |
| MabI | ACCWGGT | 1 cut(s) | 495 |
| MaeI | CTAG | 3 cut(s) | 224, 345, 681 |
| MaeIII | GTNAC | 1 cut(s) | 733 |
| MalI | GATC | 1 cut(s) | 894 |
| MboI | GATC | 1 cut(s) | 892 |
| MboII | GAAGA | 5 cut(s) | 50, 103, 425, 520, 756 |
| MflI | RGATCY | 1 cut(s) | 892 |
| MhlI | GDGCHC | 1 cut(s) | 427 |
| MluCI | AATT | 5 cut(s) | 209, 213, 484, 724, 856 |
| Mly113I | GGCGCC | 1 cut(s) | 320 |
| MlyI | GAGTC | 2 cut(s) | 829, 860 |
| MmeI | TCCRAC | 1 cut(s) | 426 |
| MseI | TTAA | 3 cut(s) | 212, 491, 636 |
| MslI | CAYNNNNRTG | 1 cut(s) | 114 |
| MspI | CCGG | 1 cut(s) | 717 |
| MspR9I | CCNGG | 3 cut(s) | 497, 718, 825 |
| MvaI | CCWGG | 2 cut(s) | 497, 825 |
| MvnI | CGCG | 1 cut(s) | 310 |
| NarI | GGCGCC | 1 cut(s) | 320 |
| NciI | CCSGG | 1 cut(s) | 718 |
| NdeII | GATC | 1 cut(s) | 892 |
| NlaIII | CATG | 2 cut(s) | 33, 566 |
| NlaIV | GGNNCC | 1 cut(s) | 321 |
| NmeAIII | GCCGAG | 1 cut(s) | 448 |
| NmuCI | GTSAC | 1 cut(s) | 733 |
| NspI | RCATGY | 1 cut(s) | 566 |
| PfeI | GAWTC | 4 cut(s) | 41, 586, 630, 877 |
| PfoI | TCCNGGA | 1 cut(s) | 823 |
| PkrI | GCNGC | 5 cut(s) | 17, 229, 309, 363, 617 |
| PleI | GAGTC | 2 cut(s) | 828, 859 |
| PluTI | GGCGCC | 1 cut(s) | 323 |
| PpsI | GAGTC | 2 cut(s) | 828, 859 |
| PshBI | ATTAAT | 1 cut(s) | 212 |
| Psp6I | CCWGG | 2 cut(s) | 495, 823 |
| PspGI | CCWGG | 2 cut(s) | 495, 823 |
| PspN4I | GGNNCC | 1 cut(s) | 321 |
| PspPI | GGNCC | 2 cut(s) | 399, 827 |
| PsuI | RGATCY | 1 cut(s) | 892 |
| RsaI | GTAC | 1 cut(s) | 730 |
| RsaNI | GTAC | 1 cut(s) | 729 |
| RseI | CAYNNNNRTG | 1 cut(s) | 114 |
| SaqAI | TTAA | 3 cut(s) | 212, 491, 636 |
| SatI | GCNGC | 5 cut(s) | 16, 228, 308, 362, 616 |
| Sau3AI | GATC | 1 cut(s) | 892 |
| Sau96I | GGNCC | 2 cut(s) | 399, 827 |
| SchI | GAGTC | 2 cut(s) | 829, 860 |
| ScrFI | CCNGG | 3 cut(s) | 497, 718, 825 |
| SduI | GDGCHC | 1 cut(s) | 427 |
| SetI | ASST | 8 cut(s) | 126, 150, 247, 276, 357, 410, 501, 711 |
| SexAI | ACCWGGT | 1 cut(s) | 495 |
| SfaNI | GCATC | 3 cut(s) | 106, 795, 892 |
| SfoI | GGCGCC | 1 cut(s) | 321 |
| SinI | GGWCC | 2 cut(s) | 399, 827 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 114 |
| Sse9I | AATT | 5 cut(s) | 209, 213, 484, 724, 856 |
| SsiI | CCGC | 3 cut(s) | 227, 308, 328 |
| SspDI | GGCGCC | 1 cut(s) | 319 |
| SspMI | CTAG | 3 cut(s) | 224, 345, 681 |
| StyD4I | CCNGG | 3 cut(s) | 495, 716, 823 |
| StyI | CCWWGG | 1 cut(s) | 245 |
| TaaI | ACNGT | 4 cut(s) | 173, 440, 523, 733 |
| TaqII | GACCGA | 1 cut(s) | 844 |
| TasI | AATT | 5 cut(s) | 209, 213, 484, 724, 856 |
| TauI | GCSGC | 2 cut(s) | 230, 310 |
| TfiI | GAWTC | 4 cut(s) | 41, 586, 630, 877 |
| Tru1I | TTAA | 3 cut(s) | 212, 491, 636 |
| Tru9I | TTAA | 3 cut(s) | 212, 491, 636 |
| TscAI | CASTG | 2 cut(s) | 321, 744 |
| TseFI | GTSAC | 1 cut(s) | 733 |
| TseI | GCWGC | 3 cut(s) | 15, 361, 615 |
| Tsp45I | GTSAC | 1 cut(s) | 733 |
| TspDTI | ATGAA | 3 cut(s) | 477, 622, 761 |
| TspRI | CASTG | 2 cut(s) | 321, 744 |
| VpaK11BI | GGWCC | 2 cut(s) | 399, 827 |
| VspI | ATTAAT | 1 cut(s) | 212 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 477 |
| XapI | RAATTY | 2 cut(s) | 484, 856 |
| XceI | RCATGY | 1 cut(s) | 566 |
| XspI | CTAG | 3 cut(s) | 224, 345, 681 |