ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Exo_endo_phos | PF03372 | 6 - 213 | 1.5e-11 | Endonuclease/Exonuclease/phosphatase family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 447 |
| AccI | GTMKAC | 1 cut(s) | 697 |
| AccII | CGCG | 1 cut(s) | 581 |
| AciI | CCGC | 2 cut(s) | 236, 581 |
| AclWI | GGATC | 1 cut(s) | 56 |
| AcoI | YGGCCR | 1 cut(s) | 298 |
| AcsI | RAATTY | 1 cut(s) | 461 |
| AcvI | CACGTG | 1 cut(s) | 616 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 310, 311 |
| AflIII | ACRYGT | 1 cut(s) | 538 |
| AgsI | TTSAA | 3 cut(s) | 31, 266, 713 |
| AjiI | CACGTC | 1 cut(s) | 539 |
| AluBI | AGCT | 2 cut(s) | 107, 446 |
| AluI | AGCT | 2 cut(s) | 107, 446 |
| Alw26I | GTCTC | 4 cut(s) | 80, 132, 313, 433 |
| AlwI | GGATC | 1 cut(s) | 56 |
| AoxI | GGCC | 2 cut(s) | 298, 666 |
| ApeKI | GCWGC | 2 cut(s) | 104, 682 |
| ApoI | RAATTY | 1 cut(s) | 461 |
| AspS9I | GGNCC | 2 cut(s) | 512, 666 |
| AsuHPI | GGTGA | 1 cut(s) | 289 |
| AvaII | GGWCC | 1 cut(s) | 512 |
| BaeGI | GKGCMC | 1 cut(s) | 58 |
| BalI | TGGCCA | 1 cut(s) | 300 |
| BauI | CACGAG | 1 cut(s) | 328 |
| BbrPI | CACGTG | 1 cut(s) | 616 |
| BbsI | GAAGAC | 1 cut(s) | 67 |
| BbvI | GCAGC | 2 cut(s) | 116, 694 |
| BccI | CCATC | 1 cut(s) | 448 |
| BceAI | ACGGC | 1 cut(s) | 628 |
| BciVI | GTATCC | 1 cut(s) | 372 |
| BclI | TGATCA | 1 cut(s) | 634 |
| BcoDI | GTCTC | 4 cut(s) | 80, 132, 313, 433 |
| BfaI | CTAG | 2 cut(s) | 131, 721 |
| BfmI | CTRYAG | 1 cut(s) | 491 |
| BfuI | GTATCC | 1 cut(s) | 372 |
| BisI | GCNGC | 3 cut(s) | 105, 582, 683 |
| BlsI | GCNGC | 3 cut(s) | 106, 583, 684 |
| Bme18I | GGWCC | 1 cut(s) | 512 |
| BmgBI | CACGTC | 1 cut(s) | 539 |
| BmgT120I | GGNCC | 2 cut(s) | 512, 666 |
| BmiI | GGNNCC | 3 cut(s) | 17, 513, 667 |
| BmsI | GCATC | 1 cut(s) | 217 |
| BpiI | GAAGAC | 1 cut(s) | 67 |
| BpuEI | CTTGAG | 1 cut(s) | 453 |
| BsaAI | YACGTR | 1 cut(s) | 616 |
| BsaI | GGTCTC | 1 cut(s) | 433 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 310, 311 |
| Bse118I | RCCGGY | 1 cut(s) | 668 |
| Bse1I | ACTGG | 1 cut(s) | 169 |
| BseGI | GGATG | 1 cut(s) | 223 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 310, 311 |
| BseNI | ACTGG | 1 cut(s) | 169 |
| BseSI | GKGCMC | 1 cut(s) | 58 |
| BseXI | GCAGC | 2 cut(s) | 116, 694 |
| Bsh1236I | CGCG | 1 cut(s) | 581 |
| BshFI | GGCC | 2 cut(s) | 300, 668 |
| BsiSI | CCGG | 1 cut(s) | 669 |
| BslFI | GGGAC | 1 cut(s) | 525 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 310, 311 |
| BsmAI | GTCTC | 4 cut(s) | 80, 132, 313, 433 |
| BsmFI | GGGAC | 1 cut(s) | 525 |
| BsmI | GAATGC | 1 cut(s) | 488 |
| BsnI | GGCC | 2 cut(s) | 300, 668 |
| Bso31I | GGTCTC | 1 cut(s) | 433 |
| Bsp1286I | GDGCHC | 1 cut(s) | 58 |
| Bsp143I | GATC | 2 cut(s) | 61, 634 |
| BspACI | CCGC | 2 cut(s) | 236, 581 |
| BspANI | GGCC | 2 cut(s) | 300, 668 |
| BspFNI | CGCG | 1 cut(s) | 581 |
| BspLI | GGNNCC | 3 cut(s) | 17, 513, 667 |
| BspPI | GGATC | 1 cut(s) | 56 |
| BspTNI | GGTCTC | 1 cut(s) | 433 |
| BsrFI | RCCGGY | 1 cut(s) | 668 |
| BsrI | ACTGG | 1 cut(s) | 169 |
| BssAI | RCCGGY | 1 cut(s) | 668 |
| BssMI | GATC | 2 cut(s) | 61, 634 |
| BssSI | CACGAG | 1 cut(s) | 328 |
| Bst2BI | CACGAG | 1 cut(s) | 328 |
| BstBAI | YACGTR | 1 cut(s) | 616 |
| BstC8I | GCNNGC | 1 cut(s) | 670 |
| BstDEI | CTNAG | 1 cut(s) | 50 |
| BstF5I | GGATG | 1 cut(s) | 223 |
| BstFNI | CGCG | 1 cut(s) | 581 |
| BstKTI | GATC | 2 cut(s) | 64, 637 |
| BstMAI | GTCTC | 4 cut(s) | 80, 132, 313, 433 |
| BstMBI | GATC | 2 cut(s) | 61, 634 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 587 |
| BstSFI | CTRYAG | 1 cut(s) | 491 |
| BstSLI | GKGCMC | 1 cut(s) | 58 |
| BstUI | CGCG | 1 cut(s) | 581 |
| BstV1I | GCAGC | 2 cut(s) | 116, 694 |
| BstV2I | GAAGAC | 1 cut(s) | 67 |
| BstX2I | RGATCY | 1 cut(s) | 61 |
| BstYI | RGATCY | 1 cut(s) | 61 |
| BsuI | GTATCC | 1 cut(s) | 372 |
| BsuRI | GGCC | 2 cut(s) | 300, 668 |
| BtrI | CACGTC | 1 cut(s) | 539 |
| BtsCI | GGATG | 1 cut(s) | 223 |
| Cac8I | GCNNGC | 1 cut(s) | 670 |
| Cfr10I | RCCGGY | 1 cut(s) | 668 |
| Cfr13I | GGNCC | 2 cut(s) | 512, 666 |
| CseI | GACGC | 2 cut(s) | 335, 587 |
| CviAII | CATG | 4 cut(s) | 375, 525, 545, 605 |
| CviJI | RGCY | 9 cut(s) | 10, 107, 183, 300, 446, 584, 590, 668, 717 |
| CviKI_1 | RGCY | 9 cut(s) | 10, 107, 183, 300, 446, 584, 590, 668, 717 |
| DdeI | CTNAG | 1 cut(s) | 50 |
| DpnI | GATC | 2 cut(s) | 63, 636 |
| DpnII | GATC | 2 cut(s) | 61, 634 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 447 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 447 |
| EaeI | YGGCCR | 1 cut(s) | 298 |
| Eco31I | GGTCTC | 1 cut(s) | 433 |
| Eco47I | GGWCC | 1 cut(s) | 512 |
| Eco72I | CACGTG | 1 cut(s) | 616 |
| EcoO109I | RGGNCCY | 1 cut(s) | 512 |
| FaeI | CATG | 4 cut(s) | 378, 528, 548, 608 |
| FaqI | GGGAC | 1 cut(s) | 525 |
| FatI | CATG | 4 cut(s) | 374, 524, 544, 604 |
| FauI | CCCGC | 1 cut(s) | 229 |
| FauNDI | CATATG | 1 cut(s) | 367 |
| FbaI | TGATCA | 1 cut(s) | 634 |
| FblI | GTMKAC | 1 cut(s) | 697 |
| Fnu4HI | GCNGC | 3 cut(s) | 105, 582, 683 |
| FokI | GGATG | 1 cut(s) | 230 |
| Fsp4HI | GCNGC | 3 cut(s) | 105, 582, 683 |
| FspBI | CTAG | 2 cut(s) | 131, 721 |
| GluI | GCNGC | 3 cut(s) | 105, 582, 683 |
| HaeIII | GGCC | 2 cut(s) | 300, 668 |
| HapII | CCGG | 1 cut(s) | 669 |
| HgaI | GACGC | 2 cut(s) | 335, 587 |
| Hin1II | CATG | 4 cut(s) | 378, 528, 548, 608 |
| HincII | GTYRAC | 1 cut(s) | 698 |
| HindII | GTYRAC | 1 cut(s) | 698 |
| HinfI | GANTC | 3 cut(s) | 117, 203, 498 |
| HpaII | CCGG | 1 cut(s) | 669 |
| HphI | GGTGA | 1 cut(s) | 289 |
| Hpy166II | GTNNAC | 4 cut(s) | 24, 507, 522, 698 |
| Hpy188I | TCNGA | 2 cut(s) | 389, 453 |
| Hpy188III | TCNNGA | 1 cut(s) | 65 |
| Hpy8I | GTNNAC | 4 cut(s) | 24, 507, 522, 698 |
| Hpy99I | CGWCG | 1 cut(s) | 702 |
| HpyAV | CCTTC | 5 cut(s) | 94, 193, 205, 260, 707 |
| HpyCH4IV | ACGT | 3 cut(s) | 538, 615, 700 |
| HpyCH4V | TGCA | 6 cut(s) | 4, 230, 374, 544, 604, 629 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 587 |
| HpyF3I | CTNAG | 1 cut(s) | 50 |
| HpySE526I | ACGT | 3 cut(s) | 538, 615, 700 |
| Hsp92II | CATG | 4 cut(s) | 378, 528, 548, 608 |
| KroI | GCCGGC | 1 cut(s) | 668 |
| KroNI | GCCGGC | 1 cut(s) | 670 |
| Ksp22I | TGATCA | 1 cut(s) | 634 |
| Kzo9I | GATC | 2 cut(s) | 61, 634 |
| LpnPI | CCDG | 7 cut(s) | 150, 158, 318, 456, 479, 544, 682 |
| Lsp1109I | GCAGC | 2 cut(s) | 116, 694 |
| LweI | GCATC | 1 cut(s) | 217 |
| MaeI | CTAG | 2 cut(s) | 131, 721 |
| MaeII | ACGT | 3 cut(s) | 538, 615, 700 |
| MaeIII | GTNAC | 1 cut(s) | 45 |
| MalI | GATC | 2 cut(s) | 63, 636 |
| MboI | GATC | 2 cut(s) | 61, 634 |
| MboII | GAAGA | 3 cut(s) | 67, 109, 428 |
| MfeI | CAATTG | 1 cut(s) | 356 |
| MflI | RGATCY | 1 cut(s) | 61 |
| MhlI | GDGCHC | 1 cut(s) | 58 |
| MlsI | TGGCCA | 1 cut(s) | 300 |
| MluCI | AATT | 3 cut(s) | 356, 461, 686 |
| MluNI | TGGCCA | 1 cut(s) | 300 |
| MmeI | TCCRAC | 1 cut(s) | 176 |
| MnlI | CCTC | 4 cut(s) | 135, 328, 525, 613 |
| Mox20I | TGGCCA | 1 cut(s) | 300 |
| MroNI | GCCGGC | 1 cut(s) | 668 |
| MscI | TGGCCA | 1 cut(s) | 300 |
| MseI | TTAA | 2 cut(s) | 396, 675 |
| MslI | CAYNNNNRTG | 1 cut(s) | 248 |
| Msp20I | TGGCCA | 1 cut(s) | 300 |
| MspI | CCGG | 1 cut(s) | 669 |
| MunI | CAATTG | 1 cut(s) | 356 |
| Mva1269I | GAATGC | 1 cut(s) | 488 |
| MvnI | CGCG | 1 cut(s) | 581 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 587 |
| NaeI | GCCGGC | 1 cut(s) | 670 |
| NdeI | CATATG | 1 cut(s) | 367 |
| NdeII | GATC | 2 cut(s) | 61, 634 |
| NgoMIV | GCCGGC | 1 cut(s) | 668 |
| NlaIII | CATG | 4 cut(s) | 378, 528, 548, 608 |
| NlaIV | GGNNCC | 3 cut(s) | 17, 513, 667 |
| PctI | GAATGC | 1 cut(s) | 488 |
| PdiI | GCCGGC | 1 cut(s) | 670 |
| PfeI | GAWTC | 3 cut(s) | 117, 203, 498 |
| PflFI | GACNNNGTC | 2 cut(s) | 71, 659 |
| PkrI | GCNGC | 3 cut(s) | 106, 583, 684 |
| PmaCI | CACGTG | 1 cut(s) | 616 |
| PmlI | CACGTG | 1 cut(s) | 616 |
| Ppu21I | YACGTR | 1 cut(s) | 616 |
| PpuMI | RGGWCCY | 1 cut(s) | 512 |
| Psp5II | RGGWCCY | 1 cut(s) | 512 |
| PspCI | CACGTG | 1 cut(s) | 616 |
| PspN4I | GGNNCC | 3 cut(s) | 17, 513, 667 |
| PspPI | GGNCC | 2 cut(s) | 512, 666 |
| PspPPI | RGGWCCY | 1 cut(s) | 512 |
| PsuI | RGATCY | 1 cut(s) | 61 |
| PsyI | GACNNNGTC | 2 cut(s) | 71, 659 |
| RseI | CAYNNNNRTG | 1 cut(s) | 248 |
| SalI | GTCGAC | 1 cut(s) | 696 |
| SaqAI | TTAA | 2 cut(s) | 396, 675 |
| SatI | GCNGC | 3 cut(s) | 105, 582, 683 |
| Sau3AI | GATC | 2 cut(s) | 61, 634 |
| Sau96I | GGNCC | 2 cut(s) | 512, 666 |
| SduI | GDGCHC | 1 cut(s) | 58 |
| SfaNI | GCATC | 1 cut(s) | 217 |
| SfcI | CTRYAG | 1 cut(s) | 491 |
| SinI | GGWCC | 1 cut(s) | 512 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 248 |
| SmlI | CTYRAG | 1 cut(s) | 468 |
| SmoI | CTYRAG | 1 cut(s) | 468 |
| Sse9I | AATT | 3 cut(s) | 356, 461, 686 |
| SsiI | CCGC | 2 cut(s) | 236, 581 |
| SspMI | CTAG | 2 cut(s) | 131, 721 |
| TaiI | ACGT | 3 cut(s) | 541, 618, 703 |
| TaqI | TCGA | 3 cut(s) | 414, 501, 697 |
| TasI | AATT | 3 cut(s) | 356, 461, 686 |
| TauI | GCSGC | 1 cut(s) | 584 |
| TfiI | GAWTC | 3 cut(s) | 117, 203, 498 |
| Tru1I | TTAA | 2 cut(s) | 396, 675 |
| Tru9I | TTAA | 2 cut(s) | 396, 675 |
| TseI | GCWGC | 2 cut(s) | 104, 682 |
| TspDTI | ATGAA | 5 cut(s) | 232, 422, 495, 561, 584 |
| Tth111I | GACNNNGTC | 2 cut(s) | 71, 659 |
| VpaK11BI | GGWCC | 1 cut(s) | 512 |
| XapI | RAATTY | 1 cut(s) | 461 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 372 |
| XmiI | GTMKAC | 1 cut(s) | 697 |
| XspI | CTAG | 2 cut(s) | 131, 721 |