ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Exo_endo_phos | PF03372 | 282 - 445 | 5.2e-10 | Endonuclease/Exonuclease/phosphatase family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 274 |
| Acc16I | TGCGCA | 1 cut(s) | 282 |
| Acc36I | ACCTGC | 1 cut(s) | 274 |
| AccB1I | GGYRCC | 1 cut(s) | 61 |
| AccI | GTMKAC | 1 cut(s) | 467 |
| AccII | CGCG | 1 cut(s) | 694 |
| AclWI | GGATC | 3 cut(s) | 235, 615, 690 |
| AcoI | YGGCCR | 2 cut(s) | 324, 826 |
| AcsI | RAATTY | 3 cut(s) | 179, 208, 598 |
| AcuI | CTGAAG | 2 cut(s) | 66, 1172 |
| AcvI | CACGTG | 1 cut(s) | 278 |
| AcyI | GRCGYC | 1 cut(s) | 62 |
| AdeI | CACNNNGTG | 1 cut(s) | 377 |
| AfaI | GTAC | 3 cut(s) | 261, 688, 850 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 456, 482, 532 |
| AflIII | ACRYGT | 2 cut(s) | 275, 371 |
| AgsI | TTSAA | 2 cut(s) | 221, 266 |
| AhlI | ACTAGT | 1 cut(s) | 353 |
| AluBI | AGCT | 4 cut(s) | 453, 591, 1014, 1237 |
| AluI | AGCT | 4 cut(s) | 453, 591, 1014, 1237 |
| Alw26I | GTCTC | 2 cut(s) | 652, 734 |
| AlwI | GGATC | 3 cut(s) | 235, 615, 690 |
| Ama87I | CYCGRG | 1 cut(s) | 141 |
| AoxI | GGCC | 8 cut(s) | 324, 432, 826, 917, 1023, 1183, 1208, 1323 |
| ApeKI | GCWGC | 4 cut(s) | 756, 780, 1052, 1277 |
| ApoI | RAATTY | 3 cut(s) | 179, 208, 598 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 51 |
| AspLEI | GCGC | 4 cut(s) | 64, 78, 283, 694 |
| AspS9I | GGNCC | 6 cut(s) | 433, 971, 1023, 1067, 1208, 1323 |
| AsuC2I | CCSGG | 2 cut(s) | 93, 1293 |
| AsuHPI | GGTGA | 4 cut(s) | 298, 730, 737, 1244 |
| AvaI | CYCGRG | 1 cut(s) | 141 |
| AvaII | GGWCC | 2 cut(s) | 971, 1067 |
| BalI | TGGCCA | 1 cut(s) | 326 |
| BanI | GGYRCC | 1 cut(s) | 61 |
| BbrPI | CACGTG | 1 cut(s) | 278 |
| BbvCI | CCTCAGC | 1 cut(s) | 1140 |
| BbvI | GCAGC | 4 cut(s) | 768, 792, 1039, 1264 |
| BceAI | ACGGC | 3 cut(s) | 66, 813, 904 |
| BcnI | CCSGG | 2 cut(s) | 93, 1293 |
| BcoDI | GTCTC | 2 cut(s) | 652, 734 |
| BcuI | ACTAGT | 1 cut(s) | 353 |
| BfaI | CTAG | 1 cut(s) | 354 |
| BfmI | CTRYAG | 2 cut(s) | 1015, 1278 |
| BfoI | RGCGCY | 2 cut(s) | 65, 79 |
| BfuAI | ACCTGC | 1 cut(s) | 274 |
| BglII | AGATCT | 1 cut(s) | 1282 |
| BisI | GCNGC | 7 cut(s) | 65, 79, 244, 757, 781, 1053, 1278 |
| BlsI | GCNGC | 7 cut(s) | 66, 80, 245, 758, 782, 1054, 1279 |
| Bme1390I | CCNGG | 2 cut(s) | 93, 1293 |
| Bme18I | GGWCC | 2 cut(s) | 971, 1067 |
| BmeT110I | CYCGRG | 1 cut(s) | 141 |
| BmgT120I | GGNCC | 6 cut(s) | 433, 971, 1023, 1067, 1208, 1323 |
| BmiI | GGNNCC | 5 cut(s) | 63, 540, 972, 1209, 1324 |
| BmrFI | CCNGG | 2 cut(s) | 93, 1293 |
| BmrI | ACTGGG | 4 cut(s) | 320, 430, 521, 996 |
| BmsI | GCATC | 3 cut(s) | 412, 1247, 1306 |
| BmuI | ACTGGG | 4 cut(s) | 320, 430, 521, 996 |
| BpmI | CTGGAG | 1 cut(s) | 554 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1140 |
| BpuMI | CCSGG | 2 cut(s) | 93, 1293 |
| Bsa29I | ATCGAT | 1 cut(s) | 945 |
| BsaAI | YACGTR | 2 cut(s) | 278, 374 |
| BsaBI | GATNNNNATC | 2 cut(s) | 681, 1287 |
| BsaHI | GRCGYC | 1 cut(s) | 62 |
| BsaJI | CCNNGG | 2 cut(s) | 396, 1070 |
| BsaWI | WCCGGW | 1 cut(s) | 55 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 862, 892, 944, 974, 1216, 1246 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 456, 482, 532 |
| Bse1I | ACTGG | 5 cut(s) | 315, 436, 527, 542, 991 |
| Bse8I | GATNNNNATC | 2 cut(s) | 681, 1287 |
| BseCI | ATCGAT | 1 cut(s) | 945 |
| BseDI | CCNNGG | 2 cut(s) | 396, 1070 |
| BseJI | GATNNNNATC | 2 cut(s) | 681, 1287 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 456, 482, 532 |
| BseMII | CTCAG | 4 cut(s) | 1122, 1131, 1341, 1358 |
| BseNI | ACTGG | 5 cut(s) | 315, 436, 527, 542, 991 |
| BseXI | GCAGC | 4 cut(s) | 768, 792, 1039, 1264 |
| Bsh1236I | CGCG | 1 cut(s) | 694 |
| BshFI | GGCC | 8 cut(s) | 326, 434, 828, 919, 1025, 1185, 1210, 1325 |
| BshNI | GGYRCC | 1 cut(s) | 61 |
| BshVI | ATCGAT | 1 cut(s) | 945 |
| BsiHKCI | CYCGRG | 1 cut(s) | 141 |
| BsiSI | CCGG | 3 cut(s) | 56, 92, 1292 |
| BslFI | GGGAC | 2 cut(s) | 424, 984 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 456, 482, 532 |
| BsmAI | GTCTC | 2 cut(s) | 652, 734 |
| BsmFI | GGGAC | 2 cut(s) | 424, 984 |
| BsnI | GGCC | 8 cut(s) | 326, 434, 828, 919, 1025, 1185, 1210, 1325 |
| BsoBI | CYCGRG | 1 cut(s) | 141 |
| Bsp143I | GATC | 6 cut(s) | 109, 227, 607, 682, 1282, 1330 |
| BspANI | GGCC | 8 cut(s) | 326, 434, 828, 919, 1025, 1185, 1210, 1325 |
| BspCNI | CTCAG | 4 cut(s) | 1123, 1132, 1340, 1359 |
| BspDI | ATCGAT | 1 cut(s) | 945 |
| BspFNI | CGCG | 1 cut(s) | 694 |
| BspHI | TCATGA | 1 cut(s) | 1300 |
| BspLI | GGNNCC | 5 cut(s) | 63, 540, 972, 1209, 1324 |
| BspMAI | CTGCAG | 1 cut(s) | 1282 |
| BspMI | ACCTGC | 1 cut(s) | 274 |
| BspPI | GGATC | 3 cut(s) | 235, 615, 690 |
| BspT107I | GGYRCC | 1 cut(s) | 61 |
| BsrI | ACTGG | 5 cut(s) | 315, 436, 527, 542, 991 |
| BssECI | CCNNGG | 2 cut(s) | 396, 1070 |
| BssMI | GATC | 6 cut(s) | 109, 227, 607, 682, 1282, 1330 |
| BssNAI | GTATAC | 1 cut(s) | 468 |
| BssNI | GRCGYC | 1 cut(s) | 62 |
| BssT1I | CCWWGG | 2 cut(s) | 396, 1070 |
| Bst1107I | GTATAC | 1 cut(s) | 468 |
| Bst4CI | ACNGT | 3 cut(s) | 674, 718, 853 |
| Bst6I | CTCTTC | 1 cut(s) | 1222 |
| BstACI | GRCGYC | 1 cut(s) | 62 |
| BstBAI | YACGTR | 2 cut(s) | 278, 374 |
| BstC8I | GCNNGC | 1 cut(s) | 909 |
| BstDEI | CTNAG | 7 cut(s) | 16, 429, 1100, 1131, 1140, 1327, 1367 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 480 |
| BstFNI | CGCG | 1 cut(s) | 694 |
| BstH2I | RGCGCY | 2 cut(s) | 65, 79 |
| BstHHI | GCGC | 4 cut(s) | 64, 78, 283, 694 |
| BstKTI | GATC | 6 cut(s) | 112, 230, 610, 685, 1285, 1333 |
| BstMAI | GTCTC | 2 cut(s) | 652, 734 |
| BstMBI | GATC | 6 cut(s) | 109, 227, 607, 682, 1282, 1330 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 73, 240, 431 |
| BstSCI | CCNGG | 2 cut(s) | 91, 1291 |
| BstSFI | CTRYAG | 2 cut(s) | 1015, 1278 |
| BstUI | CGCG | 1 cut(s) | 694 |
| BstV1I | GCAGC | 4 cut(s) | 768, 792, 1039, 1264 |
| BstX2I | RGATCY | 1 cut(s) | 1282 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1181 |
| BstYI | RGATCY | 1 cut(s) | 1282 |
| BstZ17I | GTATAC | 1 cut(s) | 468 |
| Bsu15I | ATCGAT | 1 cut(s) | 945 |
| BsuRI | GGCC | 8 cut(s) | 326, 434, 828, 919, 1025, 1185, 1210, 1325 |
| BsuTUI | ATCGAT | 1 cut(s) | 945 |
| BtgZI | GCGATG | 1 cut(s) | 120 |
| BtsI | GCAGTG | 2 cut(s) | 16, 880 |
| BtsIMutI | CAGTG | 3 cut(s) | 16, 679, 880 |
| BveI | ACCTGC | 1 cut(s) | 274 |
| Cac8I | GCNNGC | 1 cut(s) | 909 |
| CciI | TCATGA | 1 cut(s) | 1300 |
| CfoI | GCGC | 4 cut(s) | 64, 78, 283, 694 |
| Cfr13I | GGNCC | 6 cut(s) | 433, 971, 1023, 1067, 1208, 1323 |
| ClaI | ATCGAT | 1 cut(s) | 945 |
| Csp6I | GTAC | 3 cut(s) | 260, 687, 849 |
| CviAII | CATG | 6 cut(s) | 231, 322, 507, 1175, 1301, 1310 |
| CviQI | GTAC | 3 cut(s) | 260, 687, 849 |
| DdeI | CTNAG | 7 cut(s) | 16, 429, 1100, 1131, 1140, 1327, 1367 |
| DinI | GGCGCC | 1 cut(s) | 63 |
| DpnI | GATC | 6 cut(s) | 111, 229, 609, 684, 1284, 1332 |
| DpnII | GATC | 6 cut(s) | 109, 227, 607, 682, 1282, 1330 |
| DraIII | CACNNNGTG | 1 cut(s) | 377 |
| EaeI | YGGCCR | 2 cut(s) | 324, 826 |
| Eam1104I | CTCTTC | 1 cut(s) | 1222 |
| EarI | CTCTTC | 1 cut(s) | 1222 |
| EciI | GGCGGA | 1 cut(s) | 752 |
| Eco130I | CCWWGG | 2 cut(s) | 396, 1070 |
| Eco47I | GGWCC | 2 cut(s) | 971, 1067 |
| Eco57I | CTGAAG | 2 cut(s) | 66, 1172 |
| Eco72I | CACGTG | 1 cut(s) | 278 |
| Eco88I | CYCGRG | 1 cut(s) | 141 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 480 |
| EcoO109I | RGGNCCY | 2 cut(s) | 971, 1323 |
| EcoT14I | CCWWGG | 2 cut(s) | 396, 1070 |
| EgeI | GGCGCC | 1 cut(s) | 63 |
| EheI | GGCGCC | 1 cut(s) | 63 |
| ErhI | CCWWGG | 2 cut(s) | 396, 1070 |
| FaeI | CATG | 6 cut(s) | 234, 325, 510, 1178, 1304, 1313 |
| FaqI | GGGAC | 2 cut(s) | 424, 984 |
| FatI | CATG | 6 cut(s) | 230, 321, 506, 1174, 1300, 1309 |
| FauI | CCCGC | 2 cut(s) | 126, 1312 |
| FblI | GTMKAC | 1 cut(s) | 467 |
| Fnu4HI | GCNGC | 7 cut(s) | 65, 79, 244, 757, 781, 1053, 1278 |
| Fsp4HI | GCNGC | 7 cut(s) | 65, 79, 244, 757, 781, 1053, 1278 |
| FspBI | CTAG | 1 cut(s) | 354 |
| FspI | TGCGCA | 1 cut(s) | 282 |
| GlaI | GCGC | 4 cut(s) | 63, 77, 282, 693 |
| GluI | GCNGC | 7 cut(s) | 65, 79, 244, 757, 781, 1053, 1278 |
| GsuI | CTGGAG | 1 cut(s) | 554 |
| HaeII | RGCGCY | 2 cut(s) | 65, 79 |
| HaeIII | GGCC | 8 cut(s) | 326, 434, 828, 919, 1025, 1185, 1210, 1325 |
| HapII | CCGG | 3 cut(s) | 56, 92, 1292 |
| HhaI | GCGC | 4 cut(s) | 64, 78, 283, 694 |
| Hin1I | GRCGYC | 1 cut(s) | 62 |
| Hin1II | CATG | 6 cut(s) | 234, 325, 510, 1178, 1304, 1313 |
| Hin6I | GCGC | 4 cut(s) | 62, 76, 281, 692 |
| HinP1I | GCGC | 4 cut(s) | 62, 76, 281, 692 |
| HindIII | AAGCTT | 1 cut(s) | 589 |
| HinfI | GANTC | 4 cut(s) | 137, 965, 1075, 1158 |
| HpaII | CCGG | 3 cut(s) | 56, 92, 1292 |
| HphI | GGTGA | 4 cut(s) | 298, 730, 737, 1244 |
| Hpy166II | GTNNAC | 3 cut(s) | 308, 351, 468 |
| Hpy188I | TCNGA | 5 cut(s) | 46, 553, 1047, 1132, 1330 |
| Hpy188III | TCNNGA | 6 cut(s) | 143, 533, 969, 1004, 1190, 1301 |
| Hpy8I | GTNNAC | 3 cut(s) | 308, 351, 468 |
| Hpy99I | CGWCG | 2 cut(s) | 718, 1047 |
| HpyAV | CCTTC | 4 cut(s) | 619, 853, 861, 1196 |
| HpyCH4III | ACNGT | 3 cut(s) | 674, 718, 853 |
| HpyCH4IV | ACGT | 3 cut(s) | 277, 373, 1042 |
| HpyCH4V | TGCA | 4 cut(s) | 234, 425, 1153, 1280 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 73, 240, 431 |
| HpyF3I | CTNAG | 7 cut(s) | 16, 429, 1100, 1131, 1140, 1327, 1367 |
| HpySE526I | ACGT | 3 cut(s) | 277, 373, 1042 |
| Hsp92I | GRCGYC | 1 cut(s) | 62 |
| Hsp92II | CATG | 6 cut(s) | 234, 325, 510, 1178, 1304, 1313 |
| HspAI | GCGC | 4 cut(s) | 62, 76, 281, 692 |
| KasI | GGCGCC | 1 cut(s) | 61 |
| Kzo9I | GATC | 6 cut(s) | 109, 227, 607, 682, 1282, 1330 |
| LmnI | GCTCC | 1 cut(s) | 870 |
| Lsp1109I | GCAGC | 4 cut(s) | 768, 792, 1039, 1264 |
| LweI | GCATC | 3 cut(s) | 412, 1247, 1306 |
| MaeI | CTAG | 1 cut(s) | 354 |
| MaeII | ACGT | 3 cut(s) | 277, 373, 1042 |
| MaeIII | GTNAC | 2 cut(s) | 199, 830 |
| MalI | GATC | 6 cut(s) | 111, 229, 609, 684, 1284, 1332 |
| MboI | GATC | 6 cut(s) | 109, 227, 607, 682, 1282, 1330 |
| MboII | GAAGA | 6 cut(s) | 510, 709, 712, 921, 1070, 1239 |
| MflI | RGATCY | 1 cut(s) | 1282 |
| MlsI | TGGCCA | 1 cut(s) | 326 |
| MluNI | TGGCCA | 1 cut(s) | 326 |
| Mly113I | GGCGCC | 1 cut(s) | 62 |
| MmeI | TCCRAC | 3 cut(s) | 875, 1025, 1221 |
| Mox20I | TGGCCA | 1 cut(s) | 326 |
| MroXI | GAANNNNTTC | 1 cut(s) | 51 |
| MscI | TGGCCA | 1 cut(s) | 326 |
| MseI | TTAA | 6 cut(s) | 125, 317, 387, 446, 765, 1092 |
| MslI | CAYNNNNRTG | 3 cut(s) | 945, 1179, 1314 |
| Msp20I | TGGCCA | 1 cut(s) | 326 |
| MspA1I | CMGCKG | 1 cut(s) | 759 |
| MspI | CCGG | 3 cut(s) | 56, 92, 1292 |
| MspR9I | CCNGG | 2 cut(s) | 93, 1293 |
| MvnI | CGCG | 1 cut(s) | 694 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 73, 240, 431 |
| NarI | GGCGCC | 1 cut(s) | 62 |
| NciI | CCSGG | 2 cut(s) | 93, 1293 |
| NdeII | GATC | 6 cut(s) | 109, 227, 607, 682, 1282, 1330 |
| NlaIII | CATG | 6 cut(s) | 234, 325, 510, 1178, 1304, 1313 |
| NlaIV | GGNNCC | 5 cut(s) | 63, 540, 972, 1209, 1324 |
| NsbI | TGCGCA | 1 cut(s) | 282 |
| PagI | TCATGA | 1 cut(s) | 1300 |
| PaqCI | CACCTGC | 1 cut(s) | 274 |
| PdmI | GAANNNNTTC | 1 cut(s) | 51 |
| PfeI | GAWTC | 4 cut(s) | 137, 965, 1075, 1158 |
| PkrI | GCNGC | 7 cut(s) | 66, 80, 245, 758, 782, 1054, 1279 |
| PluTI | GGCGCC | 1 cut(s) | 65 |
| PmaCI | CACGTG | 1 cut(s) | 278 |
| PmlI | CACGTG | 1 cut(s) | 278 |
| Ppu21I | YACGTR | 2 cut(s) | 278, 374 |
| PpuMI | RGGWCCY | 1 cut(s) | 971 |
| Psp5II | RGGWCCY | 1 cut(s) | 971 |
| PspCI | CACGTG | 1 cut(s) | 278 |
| PspN4I | GGNNCC | 5 cut(s) | 63, 540, 972, 1209, 1324 |
| PspPI | GGNCC | 6 cut(s) | 433, 971, 1023, 1067, 1208, 1323 |
| PspPPI | RGGWCCY | 1 cut(s) | 971 |
| PstI | CTGCAG | 1 cut(s) | 1282 |
| PsuI | RGATCY | 1 cut(s) | 1282 |
| RsaI | GTAC | 3 cut(s) | 261, 688, 850 |
| RsaNI | GTAC | 3 cut(s) | 260, 687, 849 |
| RseI | CAYNNNNRTG | 3 cut(s) | 945, 1179, 1314 |
| SaqAI | TTAA | 6 cut(s) | 125, 317, 387, 446, 765, 1092 |
| SatI | GCNGC | 7 cut(s) | 65, 79, 244, 757, 781, 1053, 1278 |
| Sau3AI | GATC | 6 cut(s) | 109, 227, 607, 682, 1282, 1330 |
| Sau96I | GGNCC | 6 cut(s) | 433, 971, 1023, 1067, 1208, 1323 |
| ScrFI | CCNGG | 2 cut(s) | 93, 1293 |
| SfaNI | GCATC | 3 cut(s) | 412, 1247, 1306 |
| SfcI | CTRYAG | 2 cut(s) | 1015, 1278 |
| SfoI | GGCGCC | 1 cut(s) | 63 |
| SinI | GGWCC | 2 cut(s) | 971, 1067 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 945, 1179, 1314 |
| SpeI | ACTAGT | 1 cut(s) | 353 |
| SspDI | GGCGCC | 1 cut(s) | 61 |
| SspMI | CTAG | 1 cut(s) | 354 |
| StyD4I | CCNGG | 2 cut(s) | 91, 1291 |
| StyI | CCWWGG | 2 cut(s) | 396, 1070 |
| TaaI | ACNGT | 3 cut(s) | 674, 718, 853 |
| TaiI | ACGT | 3 cut(s) | 280, 376, 1045 |
| TaqI | TCGA | 2 cut(s) | 945, 1161 |
| TatI | WGTACW | 1 cut(s) | 259 |
| TauI | GCSGC | 3 cut(s) | 67, 81, 246 |
| TfiI | GAWTC | 4 cut(s) | 137, 965, 1075, 1158 |
| Tru1I | TTAA | 6 cut(s) | 125, 317, 387, 446, 765, 1092 |
| Tru9I | TTAA | 6 cut(s) | 125, 317, 387, 446, 765, 1092 |
| TscAI | CASTG | 3 cut(s) | 16, 679, 880 |
| TseI | GCWGC | 4 cut(s) | 756, 780, 1052, 1277 |
| TspDTI | ATGAA | 6 cut(s) | 105, 495, 1110, 1289, 1298, 1317 |
| TspGWI | ACGGA | 1 cut(s) | 472 |
| TspRI | CASTG | 3 cut(s) | 16, 679, 880 |
| VpaK11BI | GGWCC | 2 cut(s) | 971, 1067 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 480 |
| XapI | RAATTY | 3 cut(s) | 179, 208, 598 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 334, 529, 1218 |
| XmiI | GTMKAC | 1 cut(s) | 467 |
| XmnI | GAANNNNTTC | 1 cut(s) | 51 |
| XspI | CTAG | 1 cut(s) | 354 |