Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 349 - 468 | 1.1e-16 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 810 |
| Acc16I | TGCGCA | 1 cut(s) | 705 |
| Acc36I | ACCTGC | 1 cut(s) | 1027 |
| AciI | CCGC | 1 cut(s) | 310 |
| AclWI | GGATC | 1 cut(s) | 1358 |
| AcsI | RAATTY | 4 cut(s) | 86, 352, 486, 1203 |
| AcuI | CTGAAG | 3 cut(s) | 444, 937, 1143 |
| AfaI | GTAC | 7 cut(s) | 195, 679, 780, 991, 1002, 1146, 1236 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 724, 811 |
| AflIII | ACRYGT | 1 cut(s) | 149 |
| AgsI | TTSAA | 8 cut(s) | 171, 208, 296, 636, 795, 1077, 1175, 1241 |
| AjiI | CACGTC | 1 cut(s) | 548 |
| AjnI | CCWGG | 1 cut(s) | 643 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 462, 494 |
| Alw26I | GTCTC | 3 cut(s) | 294, 719, 795 |
| AlwI | GGATC | 1 cut(s) | 1358 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 701, 1142 |
| AoxI | GGCC | 2 cut(s) | 59, 516 |
| ApeKI | GCWGC | 7 cut(s) | 74, 138, 536, 701, 1127, 1216, 1315 |
| ApoI | RAATTY | 4 cut(s) | 86, 352, 486, 1203 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 376 |
| AspA2I | CCTAGG | 1 cut(s) | 62 |
| AspLEI | GCGC | 1 cut(s) | 706 |
| AspS9I | GGNCC | 2 cut(s) | 96, 647 |
| AsuNHI | GCTAGC | 1 cut(s) | 1387 |
| AvaII | GGWCC | 2 cut(s) | 96, 647 |
| AvrII | CCTAGG | 1 cut(s) | 62 |
| BaeGI | GKGCMC | 1 cut(s) | 878 |
| BanII | GRGCYC | 1 cut(s) | 70 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 935, 967 |
| BbsI | GAAGAC | 2 cut(s) | 832, 954 |
| BbvI | GCAGC | 7 cut(s) | 61, 150, 523, 688, 1114, 1228, 1327 |
| BccI | CCATC | 7 cut(s) | 2, 335, 410, 426, 763, 980, 1046 |
| BceAI | ACGGC | 1 cut(s) | 1229 |
| BciT130I | CCWGG | 1 cut(s) | 645 |
| BciVI | GTATCC | 1 cut(s) | 684 |
| BclI | TGATCA | 1 cut(s) | 1024 |
| BcoDI | GTCTC | 3 cut(s) | 294, 719, 795 |
| BfaI | CTAG | 5 cut(s) | 63, 1181, 1371, 1388, 1400 |
| BfmI | CTRYAG | 1 cut(s) | 1313 |
| BfuAI | ACCTGC | 1 cut(s) | 1027 |
| BfuI | GTATCC | 1 cut(s) | 684 |
| BisI | GCNGC | 8 cut(s) | 75, 139, 311, 537, 702, 1128, 1217, 1316 |
| BlnI | CCTAGG | 1 cut(s) | 62 |
| BlsI | GCNGC | 8 cut(s) | 76, 140, 312, 538, 703, 1129, 1218, 1317 |
| BmcAI | AGTACT | 1 cut(s) | 1236 |
| Bme1390I | CCNGG | 1 cut(s) | 645 |
| Bme18I | GGWCC | 2 cut(s) | 96, 647 |
| BmgBI | CACGTC | 1 cut(s) | 548 |
| BmgT120I | GGNCC | 2 cut(s) | 96, 647 |
| BmiI | GGNNCC | 2 cut(s) | 98, 1117 |
| BmrFI | CCNGG | 1 cut(s) | 645 |
| BmsI | GCATC | 5 cut(s) | 458, 615, 637, 1294, 1346 |
| BmtI | GCTAGC | 1 cut(s) | 1391 |
| BpiI | GAAGAC | 2 cut(s) | 832, 954 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1083, 1115 |
| BsaI | GGTCTC | 1 cut(s) | 795 |
| BsaJI | CCNNGG | 4 cut(s) | 62, 723, 885, 1346 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 724, 811 |
| Bse1I | ACTGG | 3 cut(s) | 503, 786, 925 |
| Bse3DI | GCAATG | 2 cut(s) | 84, 1170 |
| BseBI | CCWGG | 1 cut(s) | 645 |
| BseDI | CCNNGG | 4 cut(s) | 62, 723, 885, 1346 |
| BseGI | GGATG | 2 cut(s) | 462, 628 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 724, 811 |
| BseMI | GCAATG | 2 cut(s) | 84, 1170 |
| BseMII | CTCAG | 5 cut(s) | 284, 606, 1010, 1114, 1295 |
| BseNI | ACTGG | 3 cut(s) | 503, 786, 925 |
| BseRI | GAGGAG | 1 cut(s) | 527 |
| BseSI | GKGCMC | 1 cut(s) | 878 |
| BseXI | GCAGC | 7 cut(s) | 61, 150, 523, 688, 1114, 1228, 1327 |
| BseYI | CCCAGC | 1 cut(s) | 392 |
| BsgI | GTGCAG | 2 cut(s) | 426, 840 |
| BshFI | GGCC | 2 cut(s) | 61, 518 |
| BsiSI | CCGG | 1 cut(s) | 848 |
| BslFI | GGGAC | 1 cut(s) | 1124 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 724, 811 |
| BsmAI | GTCTC | 3 cut(s) | 294, 719, 795 |
| BsmFI | GGGAC | 1 cut(s) | 1124 |
| BsnI | GGCC | 2 cut(s) | 61, 518 |
| Bso31I | GGTCTC | 1 cut(s) | 795 |
| Bsp1286I | GDGCHC | 2 cut(s) | 70, 878 |
| Bsp1407I | TGTACA | 1 cut(s) | 1144 |
| Bsp143I | GATC | 5 cut(s) | 211, 317, 603, 1024, 1350 |
| Bsp19I | CCATGG | 1 cut(s) | 1346 |
| BspACI | CCGC | 1 cut(s) | 310 |
| BspANI | GGCC | 2 cut(s) | 61, 518 |
| BspCNI | CTCAG | 5 cut(s) | 283, 605, 1009, 1113, 1294 |
| BspHI | TCATGA | 1 cut(s) | 118 |
| BspLI | GGNNCC | 2 cut(s) | 98, 1117 |
| BspMAI | CTGCAG | 1 cut(s) | 1317 |
| BspMI | ACCTGC | 1 cut(s) | 1027 |
| BspOI | GCTAGC | 1 cut(s) | 1391 |
| BspPI | GGATC | 1 cut(s) | 1358 |
| BspTNI | GGTCTC | 1 cut(s) | 795 |
| BsrDI | GCAATG | 2 cut(s) | 84, 1170 |
| BsrGI | TGTACA | 1 cut(s) | 1144 |
| BsrI | ACTGG | 3 cut(s) | 503, 786, 925 |
| BssECI | CCNNGG | 4 cut(s) | 62, 723, 885, 1346 |
| BssMI | GATC | 5 cut(s) | 211, 317, 603, 1024, 1350 |
| BssT1I | CCWWGG | 4 cut(s) | 62, 723, 885, 1346 |
| Bst2UI | CCWGG | 1 cut(s) | 645 |
| Bst4CI | ACNGT | 5 cut(s) | 618, 738, 819, 831, 1434 |
| Bst6I | CTCTTC | 3 cut(s) | 297, 504, 594 |
| BstAUI | TGTACA | 1 cut(s) | 1144 |
| BstC8I | GCNNGC | 6 cut(s) | 59, 158, 708, 1253, 1257, 1389 |
| BstDEI | CTNAG | 6 cut(s) | 270, 592, 996, 1100, 1281, 1294 |
| BstDSI | CCRYGG | 1 cut(s) | 1346 |
| BstF5I | GGATG | 2 cut(s) | 462, 628 |
| BstHHI | GCGC | 1 cut(s) | 706 |
| BstKTI | GATC | 5 cut(s) | 214, 320, 606, 1027, 1353 |
| BstMAI | GTCTC | 3 cut(s) | 294, 719, 795 |
| BstMBI | GATC | 5 cut(s) | 211, 317, 603, 1024, 1350 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 74, 707, 1133, 1265 |
| BstNI | CCWGG | 1 cut(s) | 645 |
| BstNSI | RCATGY | 4 cut(s) | 153, 160, 710, 1151 |
| BstSCI | CCNGG | 1 cut(s) | 643 |
| BstSFI | CTRYAG | 1 cut(s) | 1313 |
| BstSLI | GKGCMC | 1 cut(s) | 878 |
| BstV1I | GCAGC | 7 cut(s) | 61, 150, 523, 688, 1114, 1228, 1327 |
| BstV2I | GAAGAC | 2 cut(s) | 832, 954 |
| BsuI | GTATCC | 1 cut(s) | 684 |
| BsuRI | GGCC | 2 cut(s) | 61, 518 |
| BtgI | CCRYGG | 1 cut(s) | 1346 |
| BtrI | CACGTC | 1 cut(s) | 548 |
| BtsCI | GGATG | 2 cut(s) | 462, 628 |
| BtsI | GCAGTG | 2 cut(s) | 852, 1016 |
| BtsIMutI | CAGTG | 3 cut(s) | 614, 852, 1016 |
| BveI | ACCTGC | 1 cut(s) | 1027 |
| Cac8I | GCNNGC | 6 cut(s) | 59, 158, 708, 1253, 1257, 1389 |
| CaiI | CAGNNNCTG | 2 cut(s) | 701, 1142 |
| CciI | TCATGA | 1 cut(s) | 118 |
| CfoI | GCGC | 1 cut(s) | 706 |
| Cfr13I | GGNCC | 2 cut(s) | 96, 647 |
| Csp6I | GTAC | 7 cut(s) | 194, 678, 779, 990, 1001, 1145, 1235 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 992, 1027 |
| CviQI | GTAC | 7 cut(s) | 194, 678, 779, 990, 1001, 1145, 1235 |
| DdeI | CTNAG | 6 cut(s) | 270, 592, 996, 1100, 1281, 1294 |
| DpnI | GATC | 5 cut(s) | 213, 319, 605, 1026, 1352 |
| DpnII | GATC | 5 cut(s) | 211, 317, 603, 1024, 1350 |
| Eam1104I | CTCTTC | 3 cut(s) | 297, 504, 594 |
| EarI | CTCTTC | 3 cut(s) | 297, 504, 594 |
| Eco130I | CCWWGG | 4 cut(s) | 62, 723, 885, 1346 |
| Eco147I | AGGCCT | 1 cut(s) | 61 |
| Eco24I | GRGCYC | 1 cut(s) | 70 |
| Eco31I | GGTCTC | 1 cut(s) | 795 |
| Eco47I | GGWCC | 2 cut(s) | 96, 647 |
| Eco57I | CTGAAG | 3 cut(s) | 444, 937, 1143 |
| EcoO109I | RGGNCCY | 1 cut(s) | 96 |
| EcoRII | CCWGG | 1 cut(s) | 643 |
| EcoT14I | CCWWGG | 4 cut(s) | 62, 723, 885, 1346 |
| EcoT22I | ATGCAT | 2 cut(s) | 630, 1153 |
| EcoT38I | GRGCYC | 1 cut(s) | 70 |
| ErhI | CCWWGG | 4 cut(s) | 62, 723, 885, 1346 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1221, 1253 |
| FaqI | GGGAC | 1 cut(s) | 1124 |
| FbaI | TGATCA | 1 cut(s) | 1024 |
| Fnu4HI | GCNGC | 8 cut(s) | 75, 139, 311, 537, 702, 1128, 1217, 1316 |
| FokI | GGATG | 2 cut(s) | 449, 615 |
| FriOI | GRGCYC | 1 cut(s) | 70 |
| Fsp4HI | GCNGC | 8 cut(s) | 75, 139, 311, 537, 702, 1128, 1217, 1316 |
| FspBI | CTAG | 5 cut(s) | 63, 1181, 1371, 1388, 1400 |
| FspI | TGCGCA | 1 cut(s) | 705 |
| GlaI | GCGC | 1 cut(s) | 705 |
| GluI | GCNGC | 8 cut(s) | 75, 139, 311, 537, 702, 1128, 1217, 1316 |
| GsaI | CCCAGC | 1 cut(s) | 396 |
| HaeIII | GGCC | 2 cut(s) | 61, 518 |
| HapII | CCGG | 1 cut(s) | 848 |
| HhaI | GCGC | 1 cut(s) | 706 |
| Hin6I | GCGC | 1 cut(s) | 704 |
| HinP1I | GCGC | 1 cut(s) | 704 |
| HincII | GTYRAC | 2 cut(s) | 281, 415 |
| HindII | GTYRAC | 2 cut(s) | 281, 415 |
| HindIII | AAGCTT | 1 cut(s) | 375 |
| HinfI | GANTC | 3 cut(s) | 261, 411, 419 |
| HpaII | CCGG | 1 cut(s) | 848 |
| Hpy166II | GTNNAC | 6 cut(s) | 132, 260, 281, 415, 680, 1287 |
| Hpy188I | TCNGA | 7 cut(s) | 424, 595, 624, 921, 956, 1103, 1429 |
| Hpy188III | TCNNGA | 6 cut(s) | 51, 91, 119, 296, 321, 650 |
| Hpy8I | GTNNAC | 6 cut(s) | 132, 260, 281, 415, 680, 1287 |
| HpyAV | CCTTC | 5 cut(s) | 125, 419, 642, 829, 1129 |
| HpyCH4III | ACNGT | 5 cut(s) | 618, 738, 819, 831, 1434 |
| HpyCH4IV | ACGT | 1 cut(s) | 547 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 74, 707, 1133, 1265 |
| HpyF3I | CTNAG | 6 cut(s) | 270, 592, 996, 1100, 1281, 1294 |
| HpySE526I | ACGT | 1 cut(s) | 547 |
| HspAI | GCGC | 1 cut(s) | 704 |
| Ksp22I | TGATCA | 1 cut(s) | 1024 |
| Kzo9I | GATC | 5 cut(s) | 211, 317, 603, 1024, 1350 |
| LmnI | GCTCC | 1 cut(s) | 1070 |
| Lsp1109I | GCAGC | 7 cut(s) | 61, 150, 523, 688, 1114, 1228, 1327 |
| LweI | GCATC | 5 cut(s) | 458, 615, 637, 1294, 1346 |
| MaeI | CTAG | 5 cut(s) | 63, 1181, 1371, 1388, 1400 |
| MaeII | ACGT | 1 cut(s) | 547 |
| MaeIII | GTNAC | 1 cut(s) | 784 |
| MalI | GATC | 5 cut(s) | 213, 319, 605, 1026, 1352 |
| MboI | GATC | 5 cut(s) | 211, 317, 603, 1024, 1350 |
| MboII | GAAGA | 7 cut(s) | 260, 284, 441, 521, 611, 837, 959 |
| MhlI | GDGCHC | 2 cut(s) | 70, 878 |
| MluCI | AATT | 5 cut(s) | 86, 352, 486, 1203, 1361 |
| MlyI | GAGTC | 2 cut(s) | 255, 420 |
| MmeI | TCCRAC | 4 cut(s) | 405, 493, 581, 1069 |
| Mph1103I | ATGCAT | 2 cut(s) | 630, 1153 |
| MroXI | GAANNNNTTC | 1 cut(s) | 376 |
| MseI | TTAA | 5 cut(s) | 21, 219, 581, 1038, 1200 |
| MspI | CCGG | 1 cut(s) | 848 |
| MspR9I | CCNGG | 1 cut(s) | 645 |
| MvaI | CCWGG | 1 cut(s) | 645 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 74, 707, 1133, 1265 |
| NcoI | CCATGG | 1 cut(s) | 1346 |
| NdeII | GATC | 5 cut(s) | 211, 317, 603, 1024, 1350 |
| NheI | GCTAGC | 1 cut(s) | 1387 |
| NlaIV | GGNNCC | 2 cut(s) | 98, 1117 |
| NsbI | TGCGCA | 1 cut(s) | 705 |
| NsiI | ATGCAT | 2 cut(s) | 630, 1153 |
| NspI | RCATGY | 4 cut(s) | 153, 160, 710, 1151 |
| PaeI | GCATGC | 2 cut(s) | 160, 710 |
| PagI | TCATGA | 1 cut(s) | 118 |
| PceI | AGGCCT | 1 cut(s) | 61 |
| PciI | ACATGT | 1 cut(s) | 149 |
| PdmI | GAANNNNTTC | 1 cut(s) | 376 |
| PfeI | GAWTC | 1 cut(s) | 419 |
| PkrI | GCNGC | 8 cut(s) | 76, 140, 312, 538, 703, 1129, 1218, 1317 |
| PleI | GAGTC | 2 cut(s) | 255, 419 |
| PpsI | GAGTC | 2 cut(s) | 255, 419 |
| PpuMI | RGGWCCY | 1 cut(s) | 96 |
| PscI | ACATGT | 1 cut(s) | 149 |
| PsiI | TTATAA | 1 cut(s) | 810 |
| Psp5II | RGGWCCY | 1 cut(s) | 96 |
| Psp6I | CCWGG | 1 cut(s) | 643 |
| PspFI | CCCAGC | 1 cut(s) | 392 |
| PspGI | CCWGG | 1 cut(s) | 643 |
| PspN4I | GGNNCC | 2 cut(s) | 98, 1117 |
| PspPI | GGNCC | 2 cut(s) | 96, 647 |
| PspPPI | RGGWCCY | 1 cut(s) | 96 |
| PstI | CTGCAG | 1 cut(s) | 1317 |
| PstNI | CAGNNNCTG | 2 cut(s) | 701, 1142 |
| RsaI | GTAC | 7 cut(s) | 195, 679, 780, 991, 1002, 1146, 1236 |
| RsaNI | GTAC | 7 cut(s) | 194, 678, 779, 990, 1001, 1145, 1235 |
| SaqAI | TTAA | 5 cut(s) | 21, 219, 581, 1038, 1200 |
| SatI | GCNGC | 8 cut(s) | 75, 139, 311, 537, 702, 1128, 1217, 1316 |
| Sau3AI | GATC | 5 cut(s) | 211, 317, 603, 1024, 1350 |
| Sau96I | GGNCC | 2 cut(s) | 96, 647 |
| ScaI | AGTACT | 1 cut(s) | 1236 |
| SchI | GAGTC | 2 cut(s) | 255, 420 |
| ScrFI | CCNGG | 1 cut(s) | 645 |
| SduI | GDGCHC | 2 cut(s) | 70, 878 |
| SfaNI | GCATC | 5 cut(s) | 458, 615, 637, 1294, 1346 |
| SfcI | CTRYAG | 1 cut(s) | 1313 |
| SinI | GGWCC | 2 cut(s) | 96, 647 |
| SphI | GCATGC | 2 cut(s) | 160, 710 |
| Sse9I | AATT | 5 cut(s) | 86, 352, 486, 1203, 1361 |
| SseBI | AGGCCT | 1 cut(s) | 61 |
| SsiI | CCGC | 1 cut(s) | 310 |
| SspI | AATATT | 1 cut(s) | 476 |
| SspMI | CTAG | 5 cut(s) | 63, 1181, 1371, 1388, 1400 |
| StuI | AGGCCT | 1 cut(s) | 61 |
| StyD4I | CCNGG | 1 cut(s) | 643 |
| StyI | CCWWGG | 4 cut(s) | 62, 723, 885, 1346 |
| TaaI | ACNGT | 5 cut(s) | 618, 738, 819, 831, 1434 |
| TaiI | ACGT | 1 cut(s) | 550 |
| TaqI | TCGA | 2 cut(s) | 1273, 1353 |
| TasI | AATT | 5 cut(s) | 86, 352, 486, 1203, 1361 |
| TatI | WGTACW | 5 cut(s) | 193, 677, 778, 1144, 1234 |
| TauI | GCSGC | 1 cut(s) | 313 |
| TfiI | GAWTC | 1 cut(s) | 419 |
| Tru1I | TTAA | 5 cut(s) | 21, 219, 581, 1038, 1200 |
| Tru9I | TTAA | 5 cut(s) | 21, 219, 581, 1038, 1200 |
| TscAI | CASTG | 3 cut(s) | 621, 859, 1016 |
| TseI | GCWGC | 7 cut(s) | 74, 138, 536, 701, 1127, 1216, 1315 |
| TspRI | CASTG | 3 cut(s) | 621, 859, 1016 |
| VpaK11BI | GGWCC | 2 cut(s) | 96, 647 |
| XapI | RAATTY | 4 cut(s) | 86, 352, 486, 1203 |
| XceI | RCATGY | 4 cut(s) | 153, 160, 710, 1151 |
| XmaJI | CCTAGG | 1 cut(s) | 62 |
| XmnI | GAANNNNTTC | 1 cut(s) | 376 |
| XspI | CTAG | 5 cut(s) | 63, 1181, 1371, 1388, 1400 |
| ZrmI | AGTACT | 1 cut(s) | 1236 |
| Zsp2I | ATGCAT | 2 cut(s) | 630, 1153 |