Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 596 |
| Acc16I | TGCGCA | 1 cut(s) | 459 |
| AccI | GTMKAC | 1 cut(s) | 171 |
| AccII | CGCG | 2 cut(s) | 534, 690 |
| AciI | CCGC | 5 cut(s) | 78, 321, 532, 585, 624 |
| AclWI | GGATC | 2 cut(s) | 549, 828 |
| AcoI | YGGCCR | 3 cut(s) | 51, 505, 729 |
| AcvI | CACGTG | 1 cut(s) | 326 |
| AcyI | GRCGYC | 1 cut(s) | 593 |
| AfaI | GTAC | 2 cut(s) | 28, 335 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 123, 327, 538 |
| AflIII | ACRYGT | 1 cut(s) | 688 |
| AgsI | TTSAA | 1 cut(s) | 211 |
| AluBI | AGCT | 3 cut(s) | 287, 724, 773 |
| AluI | AGCT | 3 cut(s) | 287, 724, 773 |
| Alw26I | GTCTC | 4 cut(s) | 51, 492, 584, 791 |
| AlwI | GGATC | 2 cut(s) | 549, 828 |
| AoxI | GGCC | 4 cut(s) | 51, 318, 505, 729 |
| ApeKI | GCWGC | 1 cut(s) | 724 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 156 |
| AspLEI | GCGC | 2 cut(s) | 452, 460 |
| AspS9I | GGNCC | 1 cut(s) | 318 |
| AsuHPI | GGTGA | 1 cut(s) | 688 |
| BalI | TGGCCA | 1 cut(s) | 53 |
| BanII | GRGCYC | 1 cut(s) | 114 |
| BauI | CACGAG | 2 cut(s) | 41, 489 |
| BbrPI | CACGTG | 1 cut(s) | 326 |
| BbvI | GCAGC | 1 cut(s) | 711 |
| BceAI | ACGGC | 1 cut(s) | 696 |
| BcoDI | GTCTC | 4 cut(s) | 51, 492, 584, 791 |
| BfaI | CTAG | 5 cut(s) | 167, 305, 417, 815, 824 |
| BisI | GCNGC | 5 cut(s) | 78, 321, 532, 586, 725 |
| BlsI | GCNGC | 5 cut(s) | 79, 322, 533, 587, 726 |
| BmgT120I | GGNCC | 1 cut(s) | 318 |
| BmiI | GGNNCC | 1 cut(s) | 319 |
| BmrI | ACTGGG | 1 cut(s) | 432 |
| BmsI | GCATC | 6 cut(s) | 57, 240, 611, 640, 742, 793 |
| BmuI | ACTGGG | 1 cut(s) | 432 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 334, 366, 788, 820 |
| BpmI | CTGGAG | 2 cut(s) | 222, 815 |
| BsaAI | YACGTR | 1 cut(s) | 326 |
| BsaBI | GATNNNNATC | 3 cut(s) | 254, 300, 540 |
| BsaHI | GRCGYC | 1 cut(s) | 593 |
| BsaJI | CCNNGG | 1 cut(s) | 30 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 123, 327, 538 |
| Bse118I | RCCGGY | 1 cut(s) | 731 |
| Bse1I | ACTGG | 1 cut(s) | 438 |
| Bse8I | GATNNNNATC | 3 cut(s) | 254, 300, 540 |
| BseDI | CCNNGG | 1 cut(s) | 30 |
| BseGI | GGATG | 5 cut(s) | 72, 133, 255, 745, 800 |
| BseJI | GATNNNNATC | 3 cut(s) | 254, 300, 540 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 123, 327, 538 |
| BseNI | ACTGG | 1 cut(s) | 438 |
| BseX3I | CGGCCG | 1 cut(s) | 505 |
| BseXI | GCAGC | 1 cut(s) | 711 |
| Bsh1236I | CGCG | 2 cut(s) | 534, 690 |
| Bsh1285I | CGRYCG | 1 cut(s) | 508 |
| BshFI | GGCC | 4 cut(s) | 53, 320, 507, 731 |
| BsiEI | CGRYCG | 1 cut(s) | 508 |
| BsiSI | CCGG | 1 cut(s) | 732 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 123, 327, 538 |
| BsmAI | GTCTC | 4 cut(s) | 51, 492, 584, 791 |
| BsmBI | CGTCTC | 1 cut(s) | 584 |
| BsmI | GAATGC | 1 cut(s) | 452 |
| BsnI | GGCC | 4 cut(s) | 53, 320, 507, 731 |
| Bsp1286I | GDGCHC | 1 cut(s) | 114 |
| Bsp1407I | TGTACA | 1 cut(s) | 333 |
| Bsp143I | GATC | 3 cut(s) | 161, 541, 820 |
| BspACI | CCGC | 5 cut(s) | 78, 321, 532, 585, 624 |
| BspANI | GGCC | 4 cut(s) | 53, 320, 507, 731 |
| BspFNI | CGCG | 2 cut(s) | 534, 690 |
| BspLI | GGNNCC | 1 cut(s) | 319 |
| BspPI | GGATC | 2 cut(s) | 549, 828 |
| BsrFI | RCCGGY | 1 cut(s) | 731 |
| BsrGI | TGTACA | 1 cut(s) | 333 |
| BsrI | ACTGG | 1 cut(s) | 438 |
| BssAI | RCCGGY | 1 cut(s) | 731 |
| BssECI | CCNNGG | 1 cut(s) | 30 |
| BssMI | GATC | 3 cut(s) | 161, 541, 820 |
| BssNI | GRCGYC | 1 cut(s) | 593 |
| BssSI | CACGAG | 2 cut(s) | 41, 489 |
| BssT1I | CCWWGG | 1 cut(s) | 30 |
| Bst2BI | CACGAG | 2 cut(s) | 41, 489 |
| BstACI | GRCGYC | 1 cut(s) | 593 |
| BstAUI | TGTACA | 1 cut(s) | 333 |
| BstBAI | YACGTR | 1 cut(s) | 326 |
| BstC8I | GCNNGC | 3 cut(s) | 114, 729, 733 |
| BstF5I | GGATG | 5 cut(s) | 72, 133, 255, 745, 800 |
| BstFNI | CGCG | 2 cut(s) | 534, 690 |
| BstHHI | GCGC | 2 cut(s) | 452, 460 |
| BstKTI | GATC | 3 cut(s) | 164, 544, 823 |
| BstMAI | GTCTC | 4 cut(s) | 51, 492, 584, 791 |
| BstMBI | GATC | 3 cut(s) | 161, 541, 820 |
| BstMCI | CGRYCG | 1 cut(s) | 508 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 709 |
| BstNSI | RCATGY | 1 cut(s) | 703 |
| BstUI | CGCG | 2 cut(s) | 534, 690 |
| BstV1I | GCAGC | 1 cut(s) | 711 |
| BstX2I | RGATCY | 1 cut(s) | 820 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 61 |
| BstYI | RGATCY | 1 cut(s) | 820 |
| BstZI | CGGCCG | 1 cut(s) | 505 |
| BsuRI | GGCC | 4 cut(s) | 53, 320, 507, 731 |
| BtgZI | GCGATG | 1 cut(s) | 634 |
| BtsCI | GGATG | 5 cut(s) | 72, 133, 255, 745, 800 |
| BtsI | GCAGTG | 1 cut(s) | 453 |
| BtsIMutI | CAGTG | 2 cut(s) | 12, 453 |
| Cac8I | GCNNGC | 3 cut(s) | 114, 729, 733 |
| CfoI | GCGC | 2 cut(s) | 452, 460 |
| Cfr10I | RCCGGY | 1 cut(s) | 731 |
| Cfr13I | GGNCC | 1 cut(s) | 318 |
| Csp6I | GTAC | 2 cut(s) | 27, 334 |
| CviAII | CATG | 6 cut(s) | 147, 339, 662, 700, 736, 808 |
| CviQI | GTAC | 2 cut(s) | 27, 334 |
| DpnI | GATC | 3 cut(s) | 163, 543, 822 |
| DpnII | GATC | 3 cut(s) | 161, 541, 820 |
| EaeI | YGGCCR | 3 cut(s) | 51, 505, 729 |
| EagI | CGGCCG | 1 cut(s) | 505 |
| EclXI | CGGCCG | 1 cut(s) | 505 |
| Eco130I | CCWWGG | 1 cut(s) | 30 |
| Eco24I | GRGCYC | 1 cut(s) | 114 |
| Eco52I | CGGCCG | 1 cut(s) | 505 |
| Eco72I | CACGTG | 1 cut(s) | 326 |
| EcoT14I | CCWWGG | 1 cut(s) | 30 |
| EcoT38I | GRGCYC | 1 cut(s) | 114 |
| ErhI | CCWWGG | 1 cut(s) | 30 |
| Esp3I | CGTCTC | 1 cut(s) | 584 |
| FaeI | CATG | 6 cut(s) | 150, 342, 665, 703, 739, 811 |
| FaiI | YATR | 9 cut(s) | 148, 260, 314, 340, 462, 663, 701, 737, 809 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 127, 159 |
| FatI | CATG | 6 cut(s) | 146, 338, 661, 699, 735, 807 |
| FblI | GTMKAC | 1 cut(s) | 171 |
| Fnu4HI | GCNGC | 5 cut(s) | 78, 321, 532, 586, 725 |
| FokI | GGATG | 5 cut(s) | 79, 140, 262, 752, 787 |
| FriOI | GRGCYC | 1 cut(s) | 114 |
| Fsp4HI | GCNGC | 5 cut(s) | 78, 321, 532, 586, 725 |
| FspBI | CTAG | 5 cut(s) | 167, 305, 417, 815, 824 |
| FspI | TGCGCA | 1 cut(s) | 459 |
| GlaI | GCGC | 2 cut(s) | 451, 459 |
| GluI | GCNGC | 5 cut(s) | 78, 321, 532, 586, 725 |
| GsuI | CTGGAG | 2 cut(s) | 222, 815 |
| HaeIII | GGCC | 4 cut(s) | 53, 320, 507, 731 |
| HapII | CCGG | 1 cut(s) | 732 |
| HhaI | GCGC | 2 cut(s) | 452, 460 |
| Hin1I | GRCGYC | 1 cut(s) | 593 |
| Hin1II | CATG | 6 cut(s) | 150, 342, 665, 703, 739, 811 |
| Hin6I | GCGC | 2 cut(s) | 450, 458 |
| HinP1I | GCGC | 2 cut(s) | 450, 458 |
| HinfI | GANTC | 5 cut(s) | 44, 255, 347, 366, 536 |
| HpaII | CCGG | 1 cut(s) | 732 |
| HphI | GGTGA | 1 cut(s) | 688 |
| Hpy166II | GTNNAC | 2 cut(s) | 172, 336 |
| Hpy188I | TCNGA | 2 cut(s) | 390, 541 |
| Hpy188III | TCNNGA | 3 cut(s) | 417, 794, 824 |
| Hpy8I | GTNNAC | 2 cut(s) | 172, 336 |
| HpyAV | CCTTC | 4 cut(s) | 98, 167, 440, 546 |
| HpyCH4IV | ACGT | 2 cut(s) | 325, 593 |
| HpyCH4V | TGCA | 5 cut(s) | 70, 300, 494, 653, 784 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 709 |
| HpySE526I | ACGT | 2 cut(s) | 325, 593 |
| Hsp92I | GRCGYC | 1 cut(s) | 593 |
| Hsp92II | CATG | 6 cut(s) | 150, 342, 665, 703, 739, 811 |
| HspAI | GCGC | 2 cut(s) | 450, 458 |
| KroI | GCCGGC | 1 cut(s) | 731 |
| KroNI | GCCGGC | 1 cut(s) | 733 |
| Kzo9I | GATC | 3 cut(s) | 161, 541, 820 |
| LmnI | GCTCC | 2 cut(s) | 34, 558 |
| LpnPI | CCDG | 8 cut(s) | 35, 186, 232, 451, 713, 745, 762, 779 |
| Lsp1109I | GCAGC | 1 cut(s) | 711 |
| LweI | GCATC | 6 cut(s) | 57, 240, 611, 640, 742, 793 |
| MaeI | CTAG | 5 cut(s) | 167, 305, 417, 815, 824 |
| MaeII | ACGT | 2 cut(s) | 325, 593 |
| MaeIII | GTNAC | 2 cut(s) | 344, 676 |
| MalI | GATC | 3 cut(s) | 163, 543, 822 |
| MboI | GATC | 3 cut(s) | 161, 541, 820 |
| MboII | GAAGA | 1 cut(s) | 487 |
| MflI | RGATCY | 1 cut(s) | 820 |
| MhlI | GDGCHC | 1 cut(s) | 114 |
| MlsI | TGGCCA | 1 cut(s) | 53 |
| MluCI | AATT | 4 cut(s) | 175, 236, 391, 495 |
| MluI | ACGCGT | 1 cut(s) | 688 |
| MluNI | TGGCCA | 1 cut(s) | 53 |
| MlyI | GAGTC | 3 cut(s) | 53, 341, 360 |
| MmeI | TCCRAC | 1 cut(s) | 720 |
| Mox20I | TGGCCA | 1 cut(s) | 53 |
| MroNI | GCCGGC | 1 cut(s) | 731 |
| MroXI | GAANNNNTTC | 1 cut(s) | 156 |
| MscI | TGGCCA | 1 cut(s) | 53 |
| MseI | TTAA | 1 cut(s) | 291 |
| MslI | CAYNNNNRTG | 1 cut(s) | 666 |
| Msp20I | TGGCCA | 1 cut(s) | 53 |
| MspI | CCGG | 1 cut(s) | 732 |
| Mva1269I | GAATGC | 1 cut(s) | 452 |
| MvnI | CGCG | 2 cut(s) | 534, 690 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 709 |
| NaeI | GCCGGC | 1 cut(s) | 733 |
| NdeII | GATC | 3 cut(s) | 161, 541, 820 |
| NgoMIV | GCCGGC | 1 cut(s) | 731 |
| NlaIII | CATG | 6 cut(s) | 150, 342, 665, 703, 739, 811 |
| NlaIV | GGNNCC | 1 cut(s) | 319 |
| NmeAIII | GCCGAG | 1 cut(s) | 483 |
| NmuCI | GTSAC | 2 cut(s) | 344, 676 |
| NsbI | TGCGCA | 1 cut(s) | 459 |
| NspI | RCATGY | 1 cut(s) | 703 |
| PctI | GAATGC | 1 cut(s) | 452 |
| PdiI | GCCGGC | 1 cut(s) | 733 |
| PdmI | GAANNNNTTC | 1 cut(s) | 156 |
| PfeI | GAWTC | 2 cut(s) | 255, 536 |
| PkrI | GCNGC | 5 cut(s) | 79, 322, 533, 587, 726 |
| PleI | GAGTC | 3 cut(s) | 52, 341, 360 |
| PmaCI | CACGTG | 1 cut(s) | 326 |
| PmlI | CACGTG | 1 cut(s) | 326 |
| PpsI | GAGTC | 3 cut(s) | 52, 341, 360 |
| Ppu21I | YACGTR | 1 cut(s) | 326 |
| PspCI | CACGTG | 1 cut(s) | 326 |
| PspN4I | GGNNCC | 1 cut(s) | 319 |
| PspPI | GGNCC | 1 cut(s) | 318 |
| PsuI | RGATCY | 1 cut(s) | 820 |
| RsaI | GTAC | 2 cut(s) | 28, 335 |
| RsaNI | GTAC | 2 cut(s) | 27, 334 |
| RseI | CAYNNNNRTG | 1 cut(s) | 666 |
| SaqAI | TTAA | 1 cut(s) | 291 |
| SatI | GCNGC | 5 cut(s) | 78, 321, 532, 586, 725 |
| Sau3AI | GATC | 3 cut(s) | 161, 541, 820 |
| Sau96I | GGNCC | 1 cut(s) | 318 |
| SchI | GAGTC | 3 cut(s) | 53, 341, 360 |
| SduI | GDGCHC | 1 cut(s) | 114 |
| SfaNI | GCATC | 6 cut(s) | 57, 240, 611, 640, 742, 793 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 666 |
| Sse9I | AATT | 4 cut(s) | 175, 236, 391, 495 |
| SsiI | CCGC | 5 cut(s) | 78, 321, 532, 585, 624 |
| SspMI | CTAG | 5 cut(s) | 167, 305, 417, 815, 824 |
| StyI | CCWWGG | 1 cut(s) | 30 |
| TaiI | ACGT | 2 cut(s) | 328, 596 |
| TaqI | TCGA | 4 cut(s) | 160, 179, 369, 599 |
| TasI | AATT | 4 cut(s) | 175, 236, 391, 495 |
| TatI | WGTACW | 1 cut(s) | 333 |
| TauI | GCSGC | 4 cut(s) | 80, 323, 534, 588 |
| TfiI | GAWTC | 2 cut(s) | 255, 536 |
| Tru1I | TTAA | 1 cut(s) | 291 |
| Tru9I | TTAA | 1 cut(s) | 291 |
| TscAI | CASTG | 2 cut(s) | 19, 460 |
| TseFI | GTSAC | 2 cut(s) | 344, 676 |
| TseI | GCWGC | 1 cut(s) | 724 |
| Tsp45I | GTSAC | 2 cut(s) | 344, 676 |
| TspDTI | ATGAA | 2 cut(s) | 135, 269 |
| TspRI | CASTG | 2 cut(s) | 19, 460 |
| XbaI | TCTAGA | 2 cut(s) | 416, 823 |
| XceI | RCATGY | 1 cut(s) | 703 |
| XmiI | GTMKAC | 1 cut(s) | 171 |
| XmnI | GAANNNNTTC | 1 cut(s) | 156 |
| XspI | CTAG | 5 cut(s) | 167, 305, 417, 815, 824 |
| ZraI | GACGTC | 1 cut(s) | 594 |