ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 2 cut(s) | 800, 1000 |
| AccIII | TCCGGA | 1 cut(s) | 949 |
| AciI | CCGC | 3 cut(s) | 188, 607, 706 |
| AclWI | GGATC | 1 cut(s) | 1026 |
| AcoI | YGGCCR | 1 cut(s) | 501 |
| AcsI | RAATTY | 2 cut(s) | 831, 1066 |
| AfaI | GTAC | 2 cut(s) | 563, 866 |
| AfeI | AGCGCT | 1 cut(s) | 575 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 222, 364, 399, 761, 800, 1000 |
| AflIII | ACRYGT | 1 cut(s) | 979 |
| AgsI | TTSAA | 6 cut(s) | 83, 169, 421, 593, 734, 836 |
| AjnI | CCWGG | 3 cut(s) | 108, 458, 782 |
| AluBI | AGCT | 3 cut(s) | 769, 877, 919 |
| AluI | AGCT | 3 cut(s) | 769, 877, 919 |
| Alw21I | GWGCWC | 1 cut(s) | 771 |
| Alw26I | GTCTC | 2 cut(s) | 151, 1018 |
| AlwI | GGATC | 1 cut(s) | 1026 |
| Aor13HI | TCCGGA | 1 cut(s) | 949 |
| Aor51HI | AGCGCT | 1 cut(s) | 575 |
| AoxI | GGCC | 3 cut(s) | 63, 454, 501 |
| ApeKI | GCWGC | 4 cut(s) | 338, 467, 470, 821 |
| ApoI | RAATTY | 2 cut(s) | 831, 1066 |
| AspLEI | GCGC | 1 cut(s) | 576 |
| AspS9I | GGNCC | 3 cut(s) | 63, 455, 786 |
| AsuC2I | CCSGG | 1 cut(s) | 154 |
| AsuHPI | GGTGA | 2 cut(s) | 142, 425 |
| AsuII | TTCGAA | 1 cut(s) | 490 |
| AvaII | GGWCC | 1 cut(s) | 786 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 225, 258 |
| BalI | TGGCCA | 1 cut(s) | 503 |
| BanII | GRGCYC | 2 cut(s) | 613, 771 |
| Bbv12I | GWGCWC | 1 cut(s) | 771 |
| BbvI | GCAGC | 4 cut(s) | 350, 479, 482, 808 |
| BccI | CCATC | 3 cut(s) | 696, 802, 1049 |
| BceAI | ACGGC | 1 cut(s) | 365 |
| BciT130I | CCWGG | 3 cut(s) | 110, 460, 784 |
| BclI | TGATCA | 1 cut(s) | 658 |
| BcnI | CCSGG | 1 cut(s) | 154 |
| BcoDI | GTCTC | 2 cut(s) | 151, 1018 |
| BfaI | CTAG | 4 cut(s) | 96, 122, 648, 756 |
| BfmI | CTRYAG | 2 cut(s) | 31, 622 |
| BfoI | RGCGCY | 1 cut(s) | 577 |
| BisI | GCNGC | 4 cut(s) | 339, 468, 471, 822 |
| BlpI | GCTNAGC | 1 cut(s) | 1005 |
| BlsI | GCNGC | 4 cut(s) | 340, 469, 472, 823 |
| Bme1390I | CCNGG | 4 cut(s) | 110, 154, 460, 784 |
| Bme18I | GGWCC | 1 cut(s) | 786 |
| BmgT120I | GGNCC | 3 cut(s) | 63, 455, 786 |
| BmiI | GGNNCC | 1 cut(s) | 457 |
| BmrFI | CCNGG | 4 cut(s) | 110, 154, 460, 784 |
| BmsI | GCATC | 3 cut(s) | 133, 846, 943 |
| BpmI | CTGGAG | 1 cut(s) | 471 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1005 |
| Bpu14I | TTCGAA | 1 cut(s) | 490 |
| BpuMI | CCSGG | 1 cut(s) | 154 |
| BsaBI | GATNNNNATC | 2 cut(s) | 256, 902 |
| BsaJI | CCNNGG | 3 cut(s) | 398, 458, 477 |
| BsaWI | WCCGGW | 2 cut(s) | 292, 949 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 222, 364, 399, 761, 800, 1000 |
| Bse118I | RCCGGY | 1 cut(s) | 86 |
| Bse1I | ACTGG | 2 cut(s) | 805, 847 |
| Bse3DI | GCAATG | 2 cut(s) | 19, 866 |
| Bse8I | GATNNNNATC | 2 cut(s) | 256, 902 |
| BseAI | TCCGGA | 1 cut(s) | 949 |
| BseBI | CCWGG | 3 cut(s) | 110, 460, 784 |
| BseDI | CCNNGG | 3 cut(s) | 398, 458, 477 |
| BseGI | GGATG | 2 cut(s) | 372, 906 |
| BseJI | GATNNNNATC | 2 cut(s) | 256, 902 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 222, 364, 399, 761, 800, 1000 |
| BseMI | GCAATG | 2 cut(s) | 19, 866 |
| BseMII | CTCAG | 3 cut(s) | 218, 864, 1019 |
| BseNI | ACTGG | 2 cut(s) | 805, 847 |
| BseXI | GCAGC | 4 cut(s) | 350, 479, 482, 808 |
| BshFI | GGCC | 3 cut(s) | 65, 456, 503 |
| BsiHKAI | GWGCWC | 1 cut(s) | 771 |
| BsiSI | CCGG | 4 cut(s) | 87, 154, 293, 950 |
| BslFI | GGGAC | 1 cut(s) | 313 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 222, 364, 399, 761, 800, 1000 |
| BsmAI | GTCTC | 2 cut(s) | 151, 1018 |
| BsmFI | GGGAC | 1 cut(s) | 313 |
| BsnI | GGCC | 3 cut(s) | 65, 456, 503 |
| Bsp119I | TTCGAA | 1 cut(s) | 490 |
| Bsp1286I | GDGCHC | 2 cut(s) | 613, 771 |
| Bsp13I | TCCGGA | 1 cut(s) | 949 |
| Bsp143I | GATC | 7 cut(s) | 219, 251, 511, 658, 675, 925, 1031 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1005 |
| Bsp19I | CCATGG | 2 cut(s) | 398, 477 |
| BspACI | CCGC | 3 cut(s) | 188, 607, 706 |
| BspANI | GGCC | 3 cut(s) | 65, 456, 503 |
| BspCNI | CTCAG | 3 cut(s) | 217, 865, 1018 |
| BspEI | TCCGGA | 1 cut(s) | 949 |
| BspLI | GGNNCC | 1 cut(s) | 457 |
| BspMAI | CTGCAG | 1 cut(s) | 35 |
| BspPI | GGATC | 1 cut(s) | 1026 |
| BspT104I | TTCGAA | 1 cut(s) | 490 |
| BsrDI | GCAATG | 2 cut(s) | 19, 866 |
| BsrFI | RCCGGY | 1 cut(s) | 86 |
| BsrI | ACTGG | 2 cut(s) | 805, 847 |
| BssAI | RCCGGY | 1 cut(s) | 86 |
| BssECI | CCNNGG | 3 cut(s) | 398, 458, 477 |
| BssMI | GATC | 7 cut(s) | 219, 251, 511, 658, 675, 925, 1031 |
| BssT1I | CCWWGG | 2 cut(s) | 398, 477 |
| Bst2UI | CCWGG | 3 cut(s) | 110, 460, 784 |
| Bst4CI | ACNGT | 5 cut(s) | 509, 626, 975, 999, 1100 |
| BstBI | TTCGAA | 1 cut(s) | 490 |
| BstC8I | GCNNGC | 2 cut(s) | 388, 609 |
| BstDEI | CTNAG | 4 cut(s) | 204, 698, 873, 1005 |
| BstDSI | CCRYGG | 2 cut(s) | 398, 477 |
| BstF5I | GGATG | 2 cut(s) | 372, 906 |
| BstH2I | RGCGCY | 1 cut(s) | 577 |
| BstHHI | GCGC | 1 cut(s) | 576 |
| BstKTI | GATC | 7 cut(s) | 222, 254, 514, 661, 678, 928, 1034 |
| BstMAI | GTCTC | 2 cut(s) | 151, 1018 |
| BstMBI | GATC | 7 cut(s) | 219, 251, 511, 658, 675, 925, 1031 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 775 |
| BstNI | CCWGG | 3 cut(s) | 110, 460, 784 |
| BstNSI | RCATGY | 2 cut(s) | 390, 983 |
| BstSCI | CCNGG | 4 cut(s) | 108, 152, 458, 782 |
| BstSFI | CTRYAG | 2 cut(s) | 31, 622 |
| BstV1I | GCAGC | 4 cut(s) | 350, 479, 482, 808 |
| BsuRI | GGCC | 3 cut(s) | 65, 456, 503 |
| BtgI | CCRYGG | 2 cut(s) | 398, 477 |
| BtsCI | GGATG | 2 cut(s) | 372, 906 |
| Cac8I | GCNNGC | 2 cut(s) | 388, 609 |
| CfoI | GCGC | 1 cut(s) | 576 |
| Cfr10I | RCCGGY | 1 cut(s) | 86 |
| Cfr13I | GGNCC | 3 cut(s) | 63, 455, 786 |
| Csp6I | GTAC | 2 cut(s) | 562, 865 |
| CviQI | GTAC | 2 cut(s) | 562, 865 |
| DdeI | CTNAG | 4 cut(s) | 204, 698, 873, 1005 |
| DpnI | GATC | 7 cut(s) | 221, 253, 513, 660, 677, 927, 1033 |
| DpnII | GATC | 7 cut(s) | 219, 251, 511, 658, 675, 925, 1031 |
| DraI | TTTAAA | 1 cut(s) | 642 |
| EaeI | YGGCCR | 1 cut(s) | 501 |
| EciI | GGCGGA | 1 cut(s) | 721 |
| Ecl136II | GAGCTC | 1 cut(s) | 769 |
| Eco130I | CCWWGG | 2 cut(s) | 398, 477 |
| Eco24I | GRGCYC | 2 cut(s) | 613, 771 |
| Eco47I | GGWCC | 1 cut(s) | 786 |
| Eco47III | AGCGCT | 1 cut(s) | 575 |
| Eco53kI | GAGCTC | 1 cut(s) | 769 |
| EcoICRI | GAGCTC | 1 cut(s) | 769 |
| EcoO109I | RGGNCCY | 2 cut(s) | 63, 455 |
| EcoRI | GAATTC | 1 cut(s) | 1066 |
| EcoRII | CCWGG | 3 cut(s) | 108, 458, 782 |
| EcoT14I | CCWWGG | 2 cut(s) | 398, 477 |
| EcoT22I | ATGCAT | 1 cut(s) | 936 |
| EcoT38I | GRGCYC | 2 cut(s) | 613, 771 |
| ErhI | CCWWGG | 2 cut(s) | 398, 477 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 903, 935 |
| FaqI | GGGAC | 1 cut(s) | 313 |
| FauI | CCCGC | 1 cut(s) | 600 |
| FbaI | TGATCA | 1 cut(s) | 658 |
| Fnu4HI | GCNGC | 4 cut(s) | 339, 468, 471, 822 |
| FokI | GGATG | 2 cut(s) | 359, 893 |
| FriOI | GRGCYC | 2 cut(s) | 613, 771 |
| Fsp4HI | GCNGC | 4 cut(s) | 339, 468, 471, 822 |
| FspBI | CTAG | 4 cut(s) | 96, 122, 648, 756 |
| GlaI | GCGC | 1 cut(s) | 575 |
| GluI | GCNGC | 4 cut(s) | 339, 468, 471, 822 |
| GsuI | CTGGAG | 1 cut(s) | 471 |
| HaeII | RGCGCY | 1 cut(s) | 577 |
| HaeIII | GGCC | 3 cut(s) | 65, 456, 503 |
| HapII | CCGG | 4 cut(s) | 87, 154, 293, 950 |
| HhaI | GCGC | 1 cut(s) | 576 |
| Hin6I | GCGC | 1 cut(s) | 574 |
| HinP1I | GCGC | 1 cut(s) | 574 |
| HincII | GTYRAC | 1 cut(s) | 46 |
| HindII | GTYRAC | 1 cut(s) | 46 |
| HindIII | AAGCTT | 1 cut(s) | 917 |
| HinfI | GANTC | 6 cut(s) | 53, 165, 200, 301, 653, 903 |
| HpaI | GTTAAC | 1 cut(s) | 46 |
| HpaII | CCGG | 4 cut(s) | 87, 154, 293, 950 |
| HphI | GGTGA | 2 cut(s) | 142, 425 |
| Hpy166II | GTNNAC | 4 cut(s) | 46, 92, 290, 564 |
| Hpy188I | TCNGA | 4 cut(s) | 207, 658, 874, 1121 |
| Hpy188III | TCNNGA | 7 cut(s) | 25, 223, 450, 715, 789, 836, 950 |
| Hpy8I | GTNNAC | 4 cut(s) | 46, 92, 290, 564 |
| HpyAV | CCTTC | 2 cut(s) | 76, 1084 |
| HpyCH4III | ACNGT | 5 cut(s) | 509, 626, 975, 999, 1100 |
| HpyCH4IV | ACGT | 2 cut(s) | 362, 485 |
| HpyCH4V | TGCA | 8 cut(s) | 33, 146, 338, 390, 809, 859, 934, 1040 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 775 |
| HpyF3I | CTNAG | 4 cut(s) | 204, 698, 873, 1005 |
| HpySE526I | ACGT | 2 cut(s) | 362, 485 |
| HspAI | GCGC | 1 cut(s) | 574 |
| Kpn2I | TCCGGA | 1 cut(s) | 949 |
| Ksp22I | TGATCA | 1 cut(s) | 658 |
| KspAI | GTTAAC | 1 cut(s) | 46 |
| Kzo9I | GATC | 7 cut(s) | 219, 251, 511, 658, 675, 925, 1031 |
| LmnI | GCTCC | 2 cut(s) | 552, 766 |
| Lsp1109I | GCAGC | 4 cut(s) | 350, 479, 482, 808 |
| LweI | GCATC | 3 cut(s) | 133, 846, 943 |
| MaeI | CTAG | 4 cut(s) | 96, 122, 648, 756 |
| MaeII | ACGT | 2 cut(s) | 362, 485 |
| MaeIII | GTNAC | 3 cut(s) | 54, 481, 975 |
| MalI | GATC | 7 cut(s) | 221, 253, 513, 660, 677, 927, 1033 |
| MboI | GATC | 7 cut(s) | 219, 251, 511, 658, 675, 925, 1031 |
| MboII | GAAGA | 4 cut(s) | 97, 504, 746, 974 |
| MhlI | GDGCHC | 2 cut(s) | 613, 771 |
| MlsI | TGGCCA | 1 cut(s) | 503 |
| MluCI | AATT | 7 cut(s) | 39, 669, 722, 831, 846, 1041, 1066 |
| MluNI | TGGCCA | 1 cut(s) | 503 |
| MlyI | GAGTC | 2 cut(s) | 62, 295 |
| MnlI | CCTC | 5 cut(s) | 289, 446, 644, 1080, 1115 |
| Mox20I | TGGCCA | 1 cut(s) | 503 |
| Mph1103I | ATGCAT | 1 cut(s) | 936 |
| MroI | TCCGGA | 1 cut(s) | 949 |
| MscI | TGGCCA | 1 cut(s) | 503 |
| MseI | TTAA | 5 cut(s) | 45, 641, 921, 984, 1050 |
| MslI | CAYNNNNRTG | 3 cut(s) | 12, 141, 273 |
| Msp20I | TGGCCA | 1 cut(s) | 503 |
| MspI | CCGG | 4 cut(s) | 87, 154, 293, 950 |
| MspR9I | CCNGG | 4 cut(s) | 110, 154, 460, 784 |
| MvaI | CCWGG | 3 cut(s) | 110, 460, 784 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 775 |
| NciI | CCSGG | 1 cut(s) | 154 |
| NcoI | CCATGG | 2 cut(s) | 398, 477 |
| NdeII | GATC | 7 cut(s) | 219, 251, 511, 658, 675, 925, 1031 |
| NlaIV | GGNNCC | 1 cut(s) | 457 |
| NmuCI | GTSAC | 2 cut(s) | 54, 481 |
| NsiI | ATGCAT | 1 cut(s) | 936 |
| NspI | RCATGY | 2 cut(s) | 390, 983 |
| NspV | TTCGAA | 1 cut(s) | 490 |
| PaeI | GCATGC | 1 cut(s) | 390 |
| PciI | ACATGT | 1 cut(s) | 979 |
| PfeI | GAWTC | 4 cut(s) | 165, 200, 653, 903 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 800, 1000 |
| PkrI | GCNGC | 4 cut(s) | 340, 469, 472, 823 |
| PleI | GAGTC | 2 cut(s) | 61, 295 |
| PpsI | GAGTC | 2 cut(s) | 61, 295 |
| PscI | ACATGT | 1 cut(s) | 979 |
| Psp124BI | GAGCTC | 1 cut(s) | 771 |
| Psp6I | CCWGG | 3 cut(s) | 108, 458, 782 |
| PspGI | CCWGG | 3 cut(s) | 108, 458, 782 |
| PspN4I | GGNNCC | 1 cut(s) | 457 |
| PspPI | GGNCC | 3 cut(s) | 63, 455, 786 |
| PstI | CTGCAG | 1 cut(s) | 35 |
| RsaI | GTAC | 2 cut(s) | 563, 866 |
| RsaNI | GTAC | 2 cut(s) | 562, 865 |
| RseI | CAYNNNNRTG | 3 cut(s) | 12, 141, 273 |
| SacI | GAGCTC | 1 cut(s) | 771 |
| SaqAI | TTAA | 5 cut(s) | 45, 641, 921, 984, 1050 |
| SatI | GCNGC | 4 cut(s) | 339, 468, 471, 822 |
| Sau3AI | GATC | 7 cut(s) | 219, 251, 511, 658, 675, 925, 1031 |
| Sau96I | GGNCC | 3 cut(s) | 63, 455, 786 |
| SchI | GAGTC | 2 cut(s) | 62, 295 |
| ScrFI | CCNGG | 4 cut(s) | 110, 154, 460, 784 |
| SduI | GDGCHC | 2 cut(s) | 613, 771 |
| SetI | ASST | 9 cut(s) | 97, 365, 395, 488, 538, 771, 879, 921, 1116 |
| SfaNI | GCATC | 3 cut(s) | 133, 846, 943 |
| SfcI | CTRYAG | 2 cut(s) | 31, 622 |
| SfuI | TTCGAA | 1 cut(s) | 490 |
| SinI | GGWCC | 1 cut(s) | 786 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 12, 141, 273 |
| SphI | GCATGC | 1 cut(s) | 390 |
| Sse9I | AATT | 7 cut(s) | 39, 669, 722, 831, 846, 1041, 1066 |
| SsiI | CCGC | 3 cut(s) | 188, 607, 706 |
| SspMI | CTAG | 4 cut(s) | 96, 122, 648, 756 |
| SstI | GAGCTC | 1 cut(s) | 771 |
| StyD4I | CCNGG | 4 cut(s) | 108, 152, 458, 782 |
| StyI | CCWWGG | 2 cut(s) | 398, 477 |
| TaaI | ACNGT | 5 cut(s) | 509, 626, 975, 999, 1100 |
| TaiI | ACGT | 2 cut(s) | 365, 488 |
| TaqI | TCGA | 2 cut(s) | 434, 490 |
| TasI | AATT | 7 cut(s) | 39, 669, 722, 831, 846, 1041, 1066 |
| TatI | WGTACW | 1 cut(s) | 561 |
| TfiI | GAWTC | 4 cut(s) | 165, 200, 653, 903 |
| Tru1I | TTAA | 5 cut(s) | 45, 641, 921, 984, 1050 |
| Tru9I | TTAA | 5 cut(s) | 45, 641, 921, 984, 1050 |
| TseFI | GTSAC | 2 cut(s) | 54, 481 |
| TseI | GCWGC | 4 cut(s) | 338, 467, 470, 821 |
| Tsp45I | GTSAC | 2 cut(s) | 54, 481 |
| TspDTI | ATGAA | 5 cut(s) | 58, 438, 762, 975, 1070 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 800, 1000 |
| VpaK11BI | GGWCC | 1 cut(s) | 786 |
| XapI | RAATTY | 2 cut(s) | 831, 1066 |
| XceI | RCATGY | 2 cut(s) | 390, 983 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 574 |
| XspI | CTAG | 4 cut(s) | 96, 122, 648, 756 |
| Zsp2I | ATGCAT | 1 cut(s) | 936 |