ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 181 |
| AccBSI | CCGCTC | 1 cut(s) | 413 |
| AccIII | TCCGGA | 1 cut(s) | 718 |
| AciI | CCGC | 3 cut(s) | 411, 470, 488 |
| AclWI | GGATC | 4 cut(s) | 165, 191, 451, 618 |
| AcoI | YGGCCR | 3 cut(s) | 3, 408, 442 |
| AcyI | GRCGYC | 1 cut(s) | 178 |
| AfaI | GTAC | 2 cut(s) | 105, 403 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 28, 603 |
| AgsI | TTSAA | 4 cut(s) | 37, 67, 451, 710 |
| AjnI | CCWGG | 4 cut(s) | 325, 386, 405, 578 |
| AluBI | AGCT | 1 cut(s) | 362 |
| AluI | AGCT | 1 cut(s) | 362 |
| Alw21I | GWGCWC | 1 cut(s) | 211 |
| Alw26I | GTCTC | 2 cut(s) | 327, 720 |
| Alw44I | GTGCAC | 1 cut(s) | 207 |
| AlwI | GGATC | 4 cut(s) | 165, 191, 451, 618 |
| Aor13HI | TCCGGA | 1 cut(s) | 718 |
| AoxI | GGCC | 5 cut(s) | 3, 30, 408, 442, 510 |
| ApaLI | GTGCAC | 1 cut(s) | 207 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 542, 574 |
| AspA2I | CCTAGG | 1 cut(s) | 569 |
| AspS9I | GGNCC | 4 cut(s) | 259, 485, 511, 566 |
| AsuHPI | GGTGA | 1 cut(s) | 144 |
| AsuII | TTCGAA | 1 cut(s) | 733 |
| AvaII | GGWCC | 3 cut(s) | 259, 485, 566 |
| AvrII | CCTAGG | 1 cut(s) | 569 |
| BaeGI | GKGCMC | 1 cut(s) | 211 |
| BalI | TGGCCA | 2 cut(s) | 5, 444 |
| BbsI | GAAGAC | 1 cut(s) | 225 |
| Bbv12I | GWGCWC | 1 cut(s) | 211 |
| BccI | CCATC | 1 cut(s) | 188 |
| BceAI | ACGGC | 1 cut(s) | 620 |
| BciT130I | CCWGG | 4 cut(s) | 327, 388, 407, 580 |
| BclI | TGATCA | 1 cut(s) | 688 |
| BcoDI | GTCTC | 2 cut(s) | 327, 720 |
| BfaI | CTAG | 6 cut(s) | 92, 120, 146, 570, 657, 738 |
| BfmI | CTRYAG | 3 cut(s) | 55, 315, 498 |
| BisI | GCNGC | 1 cut(s) | 411 |
| BlnI | CCTAGG | 1 cut(s) | 569 |
| BlsI | GCNGC | 1 cut(s) | 412 |
| Bme1390I | CCNGG | 4 cut(s) | 327, 388, 407, 580 |
| Bme18I | GGWCC | 3 cut(s) | 259, 485, 566 |
| BmgT120I | GGNCC | 4 cut(s) | 259, 485, 511, 566 |
| BmiI | GGNNCC | 2 cut(s) | 261, 392 |
| BmrFI | CCNGG | 4 cut(s) | 327, 388, 407, 580 |
| BmsI | GCATC | 2 cut(s) | 76, 289 |
| BoxI | GACNNNNGTC | 1 cut(s) | 225 |
| BpiI | GAAGAC | 1 cut(s) | 225 |
| BpmI | CTGGAG | 1 cut(s) | 309 |
| Bpu10I | CCTNAGC | 1 cut(s) | 414 |
| Bpu14I | TTCGAA | 1 cut(s) | 733 |
| Bsa29I | ATCGAT | 1 cut(s) | 297 |
| BsaAI | YACGTR | 1 cut(s) | 401 |
| BsaHI | GRCGYC | 1 cut(s) | 178 |
| BsaI | GGTCTC | 1 cut(s) | 327 |
| BsaJI | CCNNGG | 4 cut(s) | 405, 428, 569, 597 |
| BsaWI | WCCGGW | 2 cut(s) | 154, 718 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 144, 174, 757, 787 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 28, 603 |
| Bse1I | ACTGG | 2 cut(s) | 6, 349 |
| Bse3DI | GCAATG | 2 cut(s) | 638, 691 |
| BseAI | TCCGGA | 1 cut(s) | 718 |
| BseBI | CCWGG | 4 cut(s) | 327, 388, 407, 580 |
| BseCI | ATCGAT | 1 cut(s) | 297 |
| BseDI | CCNNGG | 4 cut(s) | 405, 428, 569, 597 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 28, 603 |
| BseMI | GCAATG | 2 cut(s) | 638, 691 |
| BseMII | CTCAG | 2 cut(s) | 428, 668 |
| BseNI | ACTGG | 2 cut(s) | 6, 349 |
| BseRI | GAGGAG | 2 cut(s) | 692, 778 |
| BseSI | GKGCMC | 1 cut(s) | 211 |
| BshFI | GGCC | 5 cut(s) | 5, 32, 410, 444, 512 |
| BshVI | ATCGAT | 1 cut(s) | 297 |
| BsiHKAI | GWGCWC | 1 cut(s) | 211 |
| BsiSI | CCGG | 2 cut(s) | 155, 719 |
| BslFI | GGGAC | 1 cut(s) | 245 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 28, 603 |
| BsmAI | GTCTC | 2 cut(s) | 327, 720 |
| BsmFI | GGGAC | 1 cut(s) | 245 |
| BsnI | GGCC | 5 cut(s) | 5, 32, 410, 444, 512 |
| Bso31I | GGTCTC | 1 cut(s) | 327 |
| Bsp119I | TTCGAA | 1 cut(s) | 733 |
| Bsp1286I | GDGCHC | 1 cut(s) | 211 |
| Bsp13I | TCCGGA | 1 cut(s) | 718 |
| Bsp143I | GATC | 5 cut(s) | 157, 183, 456, 610, 688 |
| Bsp19I | CCATGG | 1 cut(s) | 428 |
| BspACI | CCGC | 3 cut(s) | 411, 470, 488 |
| BspANI | GGCC | 5 cut(s) | 5, 32, 410, 444, 512 |
| BspCNI | CTCAG | 2 cut(s) | 427, 669 |
| BspDI | ATCGAT | 1 cut(s) | 297 |
| BspEI | TCCGGA | 1 cut(s) | 718 |
| BspLI | GGNNCC | 2 cut(s) | 261, 392 |
| BspMAI | CTGCAG | 1 cut(s) | 59 |
| BspPI | GGATC | 4 cut(s) | 165, 191, 451, 618 |
| BspT104I | TTCGAA | 1 cut(s) | 733 |
| BspTNI | GGTCTC | 1 cut(s) | 327 |
| BsrBI | CCGCTC | 1 cut(s) | 413 |
| BsrDI | GCAATG | 2 cut(s) | 638, 691 |
| BsrI | ACTGG | 2 cut(s) | 6, 349 |
| BssECI | CCNNGG | 4 cut(s) | 405, 428, 569, 597 |
| BssMI | GATC | 5 cut(s) | 157, 183, 456, 610, 688 |
| BssNI | GRCGYC | 1 cut(s) | 178 |
| BssT1I | CCWWGG | 3 cut(s) | 428, 569, 597 |
| Bst2UI | CCWGG | 4 cut(s) | 327, 388, 407, 580 |
| Bst4CI | ACNGT | 2 cut(s) | 172, 790 |
| BstACI | GRCGYC | 1 cut(s) | 178 |
| BstBAI | YACGTR | 1 cut(s) | 401 |
| BstBI | TTCGAA | 1 cut(s) | 733 |
| BstC8I | GCNNGC | 2 cut(s) | 30, 442 |
| BstDEI | CTNAG | 2 cut(s) | 414, 677 |
| BstDSI | CCRYGG | 1 cut(s) | 428 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 26 |
| BstKTI | GATC | 5 cut(s) | 160, 186, 459, 613, 691 |
| BstMAI | GTCTC | 2 cut(s) | 327, 720 |
| BstMBI | GATC | 5 cut(s) | 157, 183, 456, 610, 688 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 368, 509 |
| BstNI | CCWGG | 4 cut(s) | 327, 388, 407, 580 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 225 |
| BstSCI | CCNGG | 4 cut(s) | 325, 386, 405, 578 |
| BstSFI | CTRYAG | 3 cut(s) | 55, 315, 498 |
| BstSLI | GKGCMC | 1 cut(s) | 211 |
| BstSNI | TACGTA | 1 cut(s) | 401 |
| BstV2I | GAAGAC | 1 cut(s) | 225 |
| BstX2I | RGATCY | 2 cut(s) | 157, 456 |
| BstYI | RGATCY | 2 cut(s) | 157, 456 |
| Bsu15I | ATCGAT | 1 cut(s) | 297 |
| BsuRI | GGCC | 5 cut(s) | 5, 32, 410, 444, 512 |
| BsuTUI | ATCGAT | 1 cut(s) | 297 |
| BtgI | CCRYGG | 1 cut(s) | 428 |
| BtsIMutI | CAGTG | 1 cut(s) | 168 |
| Cac8I | GCNNGC | 2 cut(s) | 30, 442 |
| Cfr13I | GGNCC | 4 cut(s) | 259, 485, 511, 566 |
| ClaI | ATCGAT | 1 cut(s) | 297 |
| CsiI | ACCWGGT | 1 cut(s) | 578 |
| Csp6I | GTAC | 2 cut(s) | 104, 402 |
| CviAII | CATG | 5 cut(s) | 25, 73, 429, 467, 553 |
| CviQI | GTAC | 2 cut(s) | 104, 402 |
| DdeI | CTNAG | 2 cut(s) | 414, 677 |
| DpnI | GATC | 5 cut(s) | 159, 185, 458, 612, 690 |
| DpnII | GATC | 5 cut(s) | 157, 183, 456, 610, 688 |
| EaeI | YGGCCR | 3 cut(s) | 3, 408, 442 |
| EciI | GGCGGA | 1 cut(s) | 477 |
| Eco105I | TACGTA | 1 cut(s) | 401 |
| Eco130I | CCWWGG | 3 cut(s) | 428, 569, 597 |
| Eco147I | AGGCCT | 1 cut(s) | 32 |
| Eco31I | GGTCTC | 1 cut(s) | 327 |
| Eco47I | GGWCC | 3 cut(s) | 259, 485, 566 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 26 |
| EcoO109I | RGGNCCY | 1 cut(s) | 259 |
| EcoRII | CCWGG | 4 cut(s) | 325, 386, 405, 578 |
| EcoT14I | CCWWGG | 3 cut(s) | 428, 569, 597 |
| ErhI | CCWWGG | 3 cut(s) | 428, 569, 597 |
| FaeI | CATG | 5 cut(s) | 28, 76, 432, 470, 556 |
| FaqI | GGGAC | 1 cut(s) | 245 |
| FatI | CATG | 5 cut(s) | 24, 72, 428, 466, 552 |
| FauNDI | CATATG | 1 cut(s) | 782 |
| FbaI | TGATCA | 1 cut(s) | 688 |
| Fnu4HI | GCNGC | 1 cut(s) | 411 |
| Fsp4HI | GCNGC | 1 cut(s) | 411 |
| FspBI | CTAG | 6 cut(s) | 92, 120, 146, 570, 657, 738 |
| GluI | GCNGC | 1 cut(s) | 411 |
| GsuI | CTGGAG | 1 cut(s) | 309 |
| HaeIII | GGCC | 5 cut(s) | 5, 32, 410, 444, 512 |
| HapII | CCGG | 2 cut(s) | 155, 719 |
| Hin1I | GRCGYC | 1 cut(s) | 178 |
| Hin1II | CATG | 5 cut(s) | 28, 76, 432, 470, 556 |
| HincII | GTYRAC | 1 cut(s) | 110 |
| HindII | GTYRAC | 1 cut(s) | 110 |
| HinfI | GANTC | 4 cut(s) | 373, 516, 558, 722 |
| HpaII | CCGG | 2 cut(s) | 155, 719 |
| HphI | GGTGA | 1 cut(s) | 144 |
| Hpy166II | GTNNAC | 4 cut(s) | 110, 209, 576, 594 |
| Hpy188I | TCNGA | 4 cut(s) | 139, 183, 678, 688 |
| Hpy188III | TCNNGA | 5 cut(s) | 37, 163, 480, 657, 719 |
| Hpy8I | GTNNAC | 4 cut(s) | 110, 209, 576, 594 |
| Hpy99I | CGWCG | 3 cut(s) | 180, 183, 566 |
| HpyAV | CCTTC | 1 cut(s) | 43 |
| HpyCH4III | ACNGT | 2 cut(s) | 172, 790 |
| HpyCH4IV | ACGT | 3 cut(s) | 106, 178, 400 |
| HpyCH4V | TGCA | 6 cut(s) | 28, 57, 209, 302, 523, 631 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 368, 509 |
| HpyF3I | CTNAG | 2 cut(s) | 414, 677 |
| HpySE526I | ACGT | 3 cut(s) | 106, 178, 400 |
| Hsp92I | GRCGYC | 1 cut(s) | 178 |
| Hsp92II | CATG | 5 cut(s) | 28, 76, 432, 470, 556 |
| Kpn2I | TCCGGA | 1 cut(s) | 718 |
| Ksp22I | TGATCA | 1 cut(s) | 688 |
| Kzo9I | GATC | 5 cut(s) | 157, 183, 456, 610, 688 |
| LweI | GCATC | 2 cut(s) | 76, 289 |
| MabI | ACCWGGT | 1 cut(s) | 578 |
| MaeI | CTAG | 6 cut(s) | 92, 120, 146, 570, 657, 738 |
| MaeII | ACGT | 3 cut(s) | 106, 178, 400 |
| MaeIII | GTNAC | 1 cut(s) | 773 |
| MalI | GATC | 5 cut(s) | 159, 185, 458, 612, 690 |
| MbiI | CCGCTC | 1 cut(s) | 413 |
| MboI | GATC | 5 cut(s) | 157, 183, 456, 610, 688 |
| MboII | GAAGA | 2 cut(s) | 10, 230 |
| MflI | RGATCY | 2 cut(s) | 157, 456 |
| MhlI | GDGCHC | 1 cut(s) | 211 |
| MlsI | TGGCCA | 2 cut(s) | 5, 444 |
| MluCI | AATT | 2 cut(s) | 546, 748 |
| MluNI | TGGCCA | 2 cut(s) | 5, 444 |
| MlyI | GAGTC | 1 cut(s) | 731 |
| MmeI | TCCRAC | 1 cut(s) | 161 |
| Mox20I | TGGCCA | 2 cut(s) | 5, 444 |
| MroI | TCCGGA | 1 cut(s) | 718 |
| MscI | TGGCCA | 2 cut(s) | 5, 444 |
| MseI | TTAA | 2 cut(s) | 252, 545 |
| MslI | CAYNNNNRTG | 3 cut(s) | 297, 450, 710 |
| Msp20I | TGGCCA | 2 cut(s) | 5, 444 |
| MspI | CCGG | 2 cut(s) | 155, 719 |
| MspR9I | CCNGG | 4 cut(s) | 327, 388, 407, 580 |
| MvaI | CCWGG | 4 cut(s) | 327, 388, 407, 580 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 368, 509 |
| NcoI | CCATGG | 1 cut(s) | 428 |
| NdeI | CATATG | 1 cut(s) | 782 |
| NdeII | GATC | 5 cut(s) | 157, 183, 456, 610, 688 |
| NlaIII | CATG | 5 cut(s) | 28, 76, 432, 470, 556 |
| NlaIV | GGNNCC | 2 cut(s) | 261, 392 |
| NspV | TTCGAA | 1 cut(s) | 733 |
| PceI | AGGCCT | 1 cut(s) | 32 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 610 |
| PfeI | GAWTC | 3 cut(s) | 373, 516, 558 |
| PfoI | TCCNGGA | 1 cut(s) | 325 |
| PkrI | GCNGC | 1 cut(s) | 412 |
| PleI | GAGTC | 1 cut(s) | 730 |
| PpsI | GAGTC | 1 cut(s) | 730 |
| Ppu21I | YACGTR | 1 cut(s) | 401 |
| PpuMI | RGGWCCY | 1 cut(s) | 259 |
| PshAI | GACNNNNGTC | 1 cut(s) | 225 |
| Psp5II | RGGWCCY | 1 cut(s) | 259 |
| Psp6I | CCWGG | 4 cut(s) | 325, 386, 405, 578 |
| PspGI | CCWGG | 4 cut(s) | 325, 386, 405, 578 |
| PspN4I | GGNNCC | 2 cut(s) | 261, 392 |
| PspPI | GGNCC | 4 cut(s) | 259, 485, 511, 566 |
| PspPPI | RGGWCCY | 1 cut(s) | 259 |
| PstI | CTGCAG | 1 cut(s) | 59 |
| PsuI | RGATCY | 2 cut(s) | 157, 456 |
| RsaI | GTAC | 2 cut(s) | 105, 403 |
| RsaNI | GTAC | 2 cut(s) | 104, 402 |
| RseI | CAYNNNNRTG | 3 cut(s) | 297, 450, 710 |
| SaqAI | TTAA | 2 cut(s) | 252, 545 |
| SatI | GCNGC | 1 cut(s) | 411 |
| Sau3AI | GATC | 5 cut(s) | 157, 183, 456, 610, 688 |
| Sau96I | GGNCC | 4 cut(s) | 259, 485, 511, 566 |
| SchI | GAGTC | 1 cut(s) | 731 |
| ScrFI | CCNGG | 4 cut(s) | 327, 388, 407, 580 |
| SduI | GDGCHC | 1 cut(s) | 211 |
| SexAI | ACCWGGT | 1 cut(s) | 578 |
| SfaNI | GCATC | 2 cut(s) | 76, 289 |
| SfcI | CTRYAG | 3 cut(s) | 55, 315, 498 |
| SfuI | TTCGAA | 1 cut(s) | 733 |
| SinI | GGWCC | 3 cut(s) | 259, 485, 566 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 297, 450, 710 |
| SnaBI | TACGTA | 1 cut(s) | 401 |
| Sse9I | AATT | 2 cut(s) | 546, 748 |
| SseBI | AGGCCT | 1 cut(s) | 32 |
| SsiI | CCGC | 3 cut(s) | 411, 470, 488 |
| SspMI | CTAG | 6 cut(s) | 92, 120, 146, 570, 657, 738 |
| StuI | AGGCCT | 1 cut(s) | 32 |
| StyD4I | CCNGG | 4 cut(s) | 325, 386, 405, 578 |
| StyI | CCWWGG | 3 cut(s) | 428, 569, 597 |
| TaaI | ACNGT | 2 cut(s) | 172, 790 |
| TaiI | ACGT | 3 cut(s) | 109, 181, 403 |
| TaqI | TCGA | 6 cut(s) | 175, 192, 268, 274, 297, 733 |
| TaqII | GACCGA | 1 cut(s) | 554 |
| TasI | AATT | 2 cut(s) | 546, 748 |
| TauI | GCSGC | 1 cut(s) | 413 |
| TfiI | GAWTC | 3 cut(s) | 373, 516, 558 |
| Tru1I | TTAA | 2 cut(s) | 252, 545 |
| Tru9I | TTAA | 2 cut(s) | 252, 545 |
| TscAI | CASTG | 1 cut(s) | 175 |
| TspRI | CASTG | 1 cut(s) | 175 |
| VneI | GTGCAC | 1 cut(s) | 207 |
| VpaK11BI | GGWCC | 3 cut(s) | 259, 485, 566 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 26 |
| XbaI | TCTAGA | 1 cut(s) | 656 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 604 |
| XmaJI | CCTAGG | 1 cut(s) | 569 |
| XspI | CTAG | 6 cut(s) | 92, 120, 146, 570, 657, 738 |
| ZraI | GACGTC | 1 cut(s) | 179 |