ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Exo_endo_phos | PF03372 | 4 - 195 | 4.2e-13 | Endonuclease/Exonuclease/phosphatase family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 885 |
| Acc36I | ACCTGC | 1 cut(s) | 841 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 568 |
| AccI | GTMKAC | 1 cut(s) | 511 |
| AciI | CCGC | 2 cut(s) | 41, 787 |
| AclWI | GGATC | 2 cut(s) | 593, 1108 |
| AcoI | YGGCCR | 1 cut(s) | 559 |
| AcuI | CTGAAG | 1 cut(s) | 752 |
| AfaI | GTAC | 2 cut(s) | 530, 765 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 533, 568, 815 |
| AgsI | TTSAA | 6 cut(s) | 107, 440, 503, 628, 657, 1049 |
| AjnI | CCWGG | 1 cut(s) | 646 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 432, 464 |
| AluBI | AGCT | 8 cut(s) | 266, 289, 364, 473, 542, 605, 668, 707 |
| AluI | AGCT | 8 cut(s) | 266, 289, 364, 473, 542, 605, 668, 707 |
| Alw21I | GWGCWC | 2 cut(s) | 730, 1102 |
| Alw26I | GTCTC | 1 cut(s) | 475 |
| Alw44I | GTGCAC | 1 cut(s) | 1098 |
| AlwI | GGATC | 2 cut(s) | 593, 1108 |
| AoxI | GGCC | 3 cut(s) | 536, 559, 617 |
| ApaLI | GTGCAC | 1 cut(s) | 1098 |
| ApeKI | GCWGC | 1 cut(s) | 279 |
| AseI | ATTAAT | 1 cut(s) | 777 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 377, 804 |
| AspS9I | GGNCC | 3 cut(s) | 299, 395, 536 |
| AsuC2I | CCSGG | 1 cut(s) | 399 |
| AsuHPI | GGTGA | 1 cut(s) | 947 |
| AvaII | GGWCC | 2 cut(s) | 299, 395 |
| BaeGI | GKGCMC | 1 cut(s) | 1102 |
| BalI | TGGCCA | 1 cut(s) | 561 |
| Bbv12I | GWGCWC | 2 cut(s) | 730, 1102 |
| BbvI | GCAGC | 1 cut(s) | 266 |
| BccI | CCATC | 3 cut(s) | 269, 926, 1150 |
| BceAI | ACGGC | 1 cut(s) | 832 |
| BciT130I | CCWGG | 1 cut(s) | 648 |
| BcnI | CCSGG | 1 cut(s) | 399 |
| BcoDI | GTCTC | 1 cut(s) | 475 |
| BfaI | CTAG | 2 cut(s) | 606, 975 |
| BfmI | CTRYAG | 1 cut(s) | 71 |
| BfuAI | ACCTGC | 1 cut(s) | 841 |
| BglII | AGATCT | 1 cut(s) | 1133 |
| BisI | GCNGC | 1 cut(s) | 280 |
| BlsI | GCNGC | 1 cut(s) | 281 |
| Bme1390I | CCNGG | 2 cut(s) | 399, 648 |
| Bme18I | GGWCC | 2 cut(s) | 299, 395 |
| BmgT120I | GGNCC | 3 cut(s) | 299, 395, 536 |
| BmiI | GGNNCC | 2 cut(s) | 38, 396 |
| BmrFI | CCNGG | 2 cut(s) | 399, 648 |
| BmsI | GCATC | 5 cut(s) | 66, 88, 347, 814, 1111 |
| BpmI | CTGGAG | 1 cut(s) | 590 |
| Bpu10I | CCTNAGC | 1 cut(s) | 344 |
| BpuEI | CTTGAG | 1 cut(s) | 44 |
| BpuMI | CCSGG | 1 cut(s) | 399 |
| BsaBI | GATNNNNATC | 1 cut(s) | 245 |
| BsaJI | CCNNGG | 2 cut(s) | 647, 710 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 1151 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 533, 568, 815 |
| Bse1I | ACTGG | 1 cut(s) | 522 |
| Bse8I | GATNNNNATC | 1 cut(s) | 245 |
| BseBI | CCWGG | 1 cut(s) | 648 |
| BseDI | CCNNGG | 2 cut(s) | 647, 710 |
| BseGI | GGATG | 2 cut(s) | 79, 937 |
| BseJI | GATNNNNATC | 1 cut(s) | 245 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 533, 568, 815 |
| BseMII | CTCAG | 2 cut(s) | 358, 488 |
| BseNI | ACTGG | 1 cut(s) | 522 |
| BseRI | GAGGAG | 1 cut(s) | 875 |
| BseSI | GKGCMC | 1 cut(s) | 1102 |
| BseXI | GCAGC | 1 cut(s) | 266 |
| BshFI | GGCC | 3 cut(s) | 538, 561, 619 |
| BsiHKAI | GWGCWC | 2 cut(s) | 730, 1102 |
| BsiSI | CCGG | 1 cut(s) | 398 |
| BslFI | GGGAC | 2 cut(s) | 408, 428 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 533, 568, 815 |
| BsmAI | GTCTC | 1 cut(s) | 475 |
| BsmBI | CGTCTC | 1 cut(s) | 475 |
| BsmFI | GGGAC | 2 cut(s) | 408, 428 |
| BsnI | GGCC | 3 cut(s) | 538, 561, 619 |
| Bsp1286I | GDGCHC | 2 cut(s) | 730, 1102 |
| Bsp143I | GATC | 3 cut(s) | 598, 1113, 1133 |
| BspACI | CCGC | 2 cut(s) | 41, 787 |
| BspANI | GGCC | 3 cut(s) | 538, 561, 619 |
| BspCNI | CTCAG | 2 cut(s) | 357, 487 |
| BspLI | GGNNCC | 2 cut(s) | 38, 396 |
| BspMI | ACCTGC | 1 cut(s) | 841 |
| BspPI | GGATC | 2 cut(s) | 593, 1108 |
| BspQI | GCTCTTC | 1 cut(s) | 1131 |
| BsrI | ACTGG | 1 cut(s) | 522 |
| BssECI | CCNNGG | 2 cut(s) | 647, 710 |
| BssMI | GATC | 3 cut(s) | 598, 1113, 1133 |
| BssT1I | CCWWGG | 1 cut(s) | 710 |
| Bst2UI | CCWGG | 1 cut(s) | 648 |
| Bst6I | CTCTTC | 2 cut(s) | 1101, 1131 |
| BstC8I | GCNNGC | 3 cut(s) | 264, 291, 540 |
| BstDEI | CTNAG | 7 cut(s) | 283, 344, 474, 532, 664, 768, 820 |
| BstF5I | GGATG | 2 cut(s) | 79, 937 |
| BstKTI | GATC | 3 cut(s) | 601, 1116, 1136 |
| BstMAI | GTCTC | 1 cut(s) | 475 |
| BstMBI | GATC | 3 cut(s) | 598, 1113, 1133 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 76 |
| BstNI | CCWGG | 1 cut(s) | 648 |
| BstSCI | CCNGG | 2 cut(s) | 397, 646 |
| BstSFI | CTRYAG | 1 cut(s) | 71 |
| BstSLI | GKGCMC | 1 cut(s) | 1102 |
| BstV1I | GCAGC | 1 cut(s) | 266 |
| BstX2I | RGATCY | 1 cut(s) | 1133 |
| BstYI | RGATCY | 1 cut(s) | 1133 |
| BsuRI | GGCC | 3 cut(s) | 538, 561, 619 |
| BtgZI | GCGATG | 1 cut(s) | 324 |
| BtsCI | GGATG | 2 cut(s) | 79, 937 |
| BtsIMutI | CAGTG | 2 cut(s) | 842, 1028 |
| BveI | ACCTGC | 1 cut(s) | 841 |
| Cac8I | GCNNGC | 3 cut(s) | 264, 291, 540 |
| Cfr13I | GGNCC | 3 cut(s) | 299, 395, 536 |
| CseI | GACGC | 2 cut(s) | 53, 344 |
| Csp6I | GTAC | 2 cut(s) | 529, 764 |
| CviAII | CATG | 1 cut(s) | 1028 |
| CviQI | GTAC | 2 cut(s) | 529, 764 |
| DdeI | CTNAG | 7 cut(s) | 283, 344, 474, 532, 664, 768, 820 |
| DpnI | GATC | 3 cut(s) | 600, 1115, 1135 |
| DpnII | GATC | 3 cut(s) | 598, 1113, 1133 |
| EaeI | YGGCCR | 1 cut(s) | 559 |
| Eam1104I | CTCTTC | 2 cut(s) | 1101, 1131 |
| EarI | CTCTTC | 2 cut(s) | 1101, 1131 |
| Eco130I | CCWWGG | 1 cut(s) | 710 |
| Eco32I | GATATC | 1 cut(s) | 247 |
| Eco47I | GGWCC | 2 cut(s) | 299, 395 |
| Eco57I | CTGAAG | 1 cut(s) | 752 |
| EcoRII | CCWGG | 1 cut(s) | 646 |
| EcoRV | GATATC | 1 cut(s) | 247 |
| EcoT14I | CCWWGG | 1 cut(s) | 710 |
| EcoT22I | ATGCAT | 1 cut(s) | 81 |
| ErhI | CCWWGG | 1 cut(s) | 710 |
| Esp3I | CGTCTC | 1 cut(s) | 475 |
| FaeI | CATG | 1 cut(s) | 1031 |
| FaqI | GGGAC | 2 cut(s) | 408, 428 |
| FatI | CATG | 1 cut(s) | 1027 |
| FauI | CCCGC | 1 cut(s) | 48 |
| FblI | GTMKAC | 1 cut(s) | 511 |
| Fnu4HI | GCNGC | 1 cut(s) | 280 |
| FokI | GGATG | 2 cut(s) | 66, 944 |
| Fsp4HI | GCNGC | 1 cut(s) | 280 |
| FspBI | CTAG | 2 cut(s) | 606, 975 |
| GluI | GCNGC | 1 cut(s) | 280 |
| GsuI | CTGGAG | 1 cut(s) | 590 |
| HaeIII | GGCC | 3 cut(s) | 538, 561, 619 |
| HapII | CCGG | 1 cut(s) | 398 |
| HgaI | GACGC | 2 cut(s) | 53, 344 |
| Hin1II | CATG | 1 cut(s) | 1031 |
| HinfI | GANTC | 1 cut(s) | 55 |
| HpaII | CCGG | 1 cut(s) | 398 |
| HphI | GGTGA | 1 cut(s) | 947 |
| Hpy166II | GTNNAC | 2 cut(s) | 512, 1100 |
| Hpy188I | TCNGA | 3 cut(s) | 477, 732, 1090 |
| Hpy188III | TCNNGA | 4 cut(s) | 52, 503, 569, 757 |
| Hpy8I | GTNNAC | 2 cut(s) | 512, 1100 |
| HpyAV | CCTTC | 5 cut(s) | 188, 680, 727, 840, 1085 |
| HpyCH4IV | ACGT | 1 cut(s) | 484 |
| HpyCH4V | TGCA | 4 cut(s) | 79, 173, 968, 1100 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 76 |
| HpyF3I | CTNAG | 7 cut(s) | 283, 344, 474, 532, 664, 768, 820 |
| HpySE526I | ACGT | 1 cut(s) | 484 |
| Hsp92II | CATG | 1 cut(s) | 1031 |
| Kzo9I | GATC | 3 cut(s) | 598, 1113, 1133 |
| LguI | GCTCTTC | 1 cut(s) | 1131 |
| LmnI | GCTCC | 2 cut(s) | 361, 712 |
| Lsp1109I | GCAGC | 1 cut(s) | 266 |
| LweI | GCATC | 5 cut(s) | 66, 88, 347, 814, 1111 |
| MaeI | CTAG | 2 cut(s) | 606, 975 |
| MaeII | ACGT | 1 cut(s) | 484 |
| MaeIII | GTNAC | 1 cut(s) | 544 |
| MalI | GATC | 3 cut(s) | 600, 1115, 1135 |
| MboI | GATC | 3 cut(s) | 598, 1113, 1133 |
| MboII | GAAGA | 8 cut(s) | 130, 146, 238, 250, 385, 452, 1118, 1118 |
| MflI | RGATCY | 1 cut(s) | 1133 |
| MhlI | GDGCHC | 2 cut(s) | 730, 1102 |
| MlsI | TGGCCA | 1 cut(s) | 561 |
| MluCI | AATT | 6 cut(s) | 46, 774, 778, 794, 915, 961 |
| MluNI | TGGCCA | 1 cut(s) | 561 |
| MlyI | GAGTC | 1 cut(s) | 49 |
| MmeI | TCCRAC | 4 cut(s) | 203, 771, 962, 1096 |
| Mox20I | TGGCCA | 1 cut(s) | 561 |
| Mph1103I | ATGCAT | 1 cut(s) | 81 |
| MroXI | GAANNNNTTC | 2 cut(s) | 377, 804 |
| MscI | TGGCCA | 1 cut(s) | 561 |
| MseI | TTAA | 7 cut(s) | 5, 420, 594, 678, 777, 855, 926 |
| MslI | CAYNNNNRTG | 2 cut(s) | 273, 963 |
| Msp20I | TGGCCA | 1 cut(s) | 561 |
| MspA1I | CMGCKG | 1 cut(s) | 542 |
| MspI | CCGG | 1 cut(s) | 398 |
| MspR9I | CCNGG | 2 cut(s) | 399, 648 |
| MvaI | CCWGG | 1 cut(s) | 648 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 76 |
| NciI | CCSGG | 1 cut(s) | 399 |
| NdeII | GATC | 3 cut(s) | 598, 1113, 1133 |
| NlaIII | CATG | 1 cut(s) | 1031 |
| NlaIV | GGNNCC | 2 cut(s) | 38, 396 |
| NsiI | ATGCAT | 1 cut(s) | 81 |
| PciSI | GCTCTTC | 1 cut(s) | 1131 |
| PdmI | GAANNNNTTC | 2 cut(s) | 377, 804 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 568 |
| PkrI | GCNGC | 1 cut(s) | 281 |
| PleI | GAGTC | 1 cut(s) | 49 |
| PpsI | GAGTC | 1 cut(s) | 49 |
| PshBI | ATTAAT | 1 cut(s) | 777 |
| PsiI | TTATAA | 1 cut(s) | 885 |
| Psp6I | CCWGG | 1 cut(s) | 646 |
| PspGI | CCWGG | 1 cut(s) | 646 |
| PspN4I | GGNNCC | 2 cut(s) | 38, 396 |
| PspPI | GGNCC | 3 cut(s) | 299, 395, 536 |
| PsuI | RGATCY | 1 cut(s) | 1133 |
| PvuII | CAGCTG | 1 cut(s) | 542 |
| RsaI | GTAC | 2 cut(s) | 530, 765 |
| RsaNI | GTAC | 2 cut(s) | 529, 764 |
| RseI | CAYNNNNRTG | 2 cut(s) | 273, 963 |
| SapI | GCTCTTC | 1 cut(s) | 1131 |
| SaqAI | TTAA | 7 cut(s) | 5, 420, 594, 678, 777, 855, 926 |
| SatI | GCNGC | 1 cut(s) | 280 |
| Sau3AI | GATC | 3 cut(s) | 598, 1113, 1133 |
| Sau96I | GGNCC | 3 cut(s) | 299, 395, 536 |
| SchI | GAGTC | 1 cut(s) | 49 |
| ScrFI | CCNGG | 2 cut(s) | 399, 648 |
| SduI | GDGCHC | 2 cut(s) | 730, 1102 |
| SfaNI | GCATC | 5 cut(s) | 66, 88, 347, 814, 1111 |
| SfcI | CTRYAG | 1 cut(s) | 71 |
| SinI | GGWCC | 2 cut(s) | 299, 395 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 273, 963 |
| SmlI | CTYRAG | 1 cut(s) | 59 |
| SmoI | CTYRAG | 1 cut(s) | 59 |
| Sse9I | AATT | 6 cut(s) | 46, 774, 778, 794, 915, 961 |
| SsiI | CCGC | 2 cut(s) | 41, 787 |
| SspI | AATATT | 1 cut(s) | 875 |
| SspMI | CTAG | 2 cut(s) | 606, 975 |
| StyD4I | CCNGG | 2 cut(s) | 397, 646 |
| StyI | CCWWGG | 1 cut(s) | 710 |
| TaiI | ACGT | 1 cut(s) | 487 |
| TaqI | TCGA | 1 cut(s) | 554 |
| TasI | AATT | 6 cut(s) | 46, 774, 778, 794, 915, 961 |
| Tru1I | TTAA | 7 cut(s) | 5, 420, 594, 678, 777, 855, 926 |
| Tru9I | TTAA | 7 cut(s) | 5, 420, 594, 678, 777, 855, 926 |
| TscAI | CASTG | 2 cut(s) | 842, 1028 |
| TseI | GCWGC | 1 cut(s) | 279 |
| TspDTI | ATGAA | 3 cut(s) | 947, 962, 1072 |
| TspGWI | ACGGA | 1 cut(s) | 516 |
| TspRI | CASTG | 2 cut(s) | 842, 1028 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 568 |
| VneI | GTGCAC | 1 cut(s) | 1098 |
| VpaK11BI | GGWCC | 2 cut(s) | 299, 395 |
| VspI | ATTAAT | 1 cut(s) | 777 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 546 |
| XmiI | GTMKAC | 1 cut(s) | 511 |
| XmnI | GAANNNNTTC | 2 cut(s) | 377, 804 |
| XspI | CTAG | 2 cut(s) | 606, 975 |
| Zsp2I | ATGCAT | 1 cut(s) | 81 |