ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 82 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 144, 531 |
| AccBSI | CCGCTC | 1 cut(s) | 502 |
| AccIII | TCCGGA | 1 cut(s) | 363 |
| AciI | CCGC | 2 cut(s) | 378, 502 |
| AclWI | GGATC | 1 cut(s) | 594 |
| AcoI | YGGCCR | 1 cut(s) | 135 |
| AcuI | CTGAAG | 1 cut(s) | 171 |
| AcyI | GRCGYC | 1 cut(s) | 79 |
| AfaI | GTAC | 2 cut(s) | 58, 165 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 144, 531, 728 |
| AflIII | ACRYGT | 2 cut(s) | 166, 281 |
| AgsI | TTSAA | 5 cut(s) | 91, 349, 521, 608, 662 |
| AjnI | CCWGG | 1 cut(s) | 132 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 657, 689 |
| AluBI | AGCT | 3 cut(s) | 257, 305, 401 |
| AluI | AGCT | 3 cut(s) | 257, 305, 401 |
| AlwI | GGATC | 1 cut(s) | 594 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 133, 221 |
| Ama87I | CYCGRG | 1 cut(s) | 261 |
| Aor13HI | TCCGGA | 1 cut(s) | 363 |
| AoxI | GGCC | 3 cut(s) | 130, 135, 383 |
| ApeKI | GCWGC | 4 cut(s) | 257, 305, 401, 718 |
| AspLEI | GCGC | 1 cut(s) | 49 |
| AspS9I | GGNCC | 3 cut(s) | 130, 361, 383 |
| AsuC2I | CCSGG | 2 cut(s) | 262, 263 |
| AsuII | TTCGAA | 1 cut(s) | 418 |
| AvaI | CYCGRG | 1 cut(s) | 261 |
| AvaII | GGWCC | 1 cut(s) | 361 |
| BaeGI | GKGCMC | 1 cut(s) | 397 |
| BalI | TGGCCA | 1 cut(s) | 137 |
| BanII | GRGCYC | 1 cut(s) | 575 |
| BbsI | GAAGAC | 1 cut(s) | 159 |
| BbvI | GCAGC | 4 cut(s) | 244, 292, 388, 705 |
| BccI | CCATC | 4 cut(s) | 77, 89, 533, 583 |
| BciT130I | CCWGG | 1 cut(s) | 134 |
| BcnI | CCSGG | 2 cut(s) | 262, 263 |
| BfaI | CTAG | 5 cut(s) | 44, 83, 302, 398, 506 |
| BglII | AGATCT | 1 cut(s) | 225 |
| BisI | GCNGC | 5 cut(s) | 258, 306, 402, 503, 719 |
| BlsI | GCNGC | 5 cut(s) | 259, 307, 403, 504, 720 |
| Bme1390I | CCNGG | 3 cut(s) | 134, 262, 263 |
| Bme18I | GGWCC | 1 cut(s) | 361 |
| BmeT110I | CYCGRG | 1 cut(s) | 261 |
| BmgT120I | GGNCC | 3 cut(s) | 130, 361, 383 |
| BmiI | GGNNCC | 1 cut(s) | 621 |
| BmrFI | CCNGG | 3 cut(s) | 134, 262, 263 |
| BpiI | GAAGAC | 1 cut(s) | 159 |
| Bpu14I | TTCGAA | 1 cut(s) | 418 |
| BpuMI | CCSGG | 2 cut(s) | 262, 263 |
| Bsa29I | ATCGAT | 1 cut(s) | 541 |
| BsaHI | GRCGYC | 1 cut(s) | 79 |
| BsaJI | CCNNGG | 2 cut(s) | 261, 262 |
| BsaWI | WCCGGW | 1 cut(s) | 363 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 144, 531, 728 |
| Bse1I | ACTGG | 3 cut(s) | 244, 436, 711 |
| BseAI | TCCGGA | 1 cut(s) | 363 |
| BseBI | CCWGG | 1 cut(s) | 134 |
| BseCI | ATCGAT | 1 cut(s) | 541 |
| BseDI | CCNNGG | 2 cut(s) | 261, 262 |
| BseGI | GGATG | 1 cut(s) | 525 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 144, 531, 728 |
| BseMII | CTCAG | 1 cut(s) | 213 |
| BseNI | ACTGG | 3 cut(s) | 244, 436, 711 |
| BseRI | GAGGAG | 2 cut(s) | 131, 590 |
| BseSI | GKGCMC | 1 cut(s) | 397 |
| BseXI | GCAGC | 4 cut(s) | 244, 292, 388, 705 |
| BsgI | GTGCAG | 1 cut(s) | 291 |
| BshFI | GGCC | 3 cut(s) | 132, 137, 385 |
| BshVI | ATCGAT | 1 cut(s) | 541 |
| BsiHKCI | CYCGRG | 1 cut(s) | 261 |
| BsiSI | CCGG | 2 cut(s) | 262, 364 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 144, 531, 728 |
| BsnI | GGCC | 3 cut(s) | 132, 137, 385 |
| BsoBI | CYCGRG | 1 cut(s) | 261 |
| Bsp119I | TTCGAA | 1 cut(s) | 418 |
| Bsp1286I | GDGCHC | 2 cut(s) | 397, 575 |
| Bsp13I | TCCGGA | 1 cut(s) | 363 |
| Bsp1407I | TGTACA | 1 cut(s) | 163 |
| Bsp143I | GATC | 4 cut(s) | 225, 291, 508, 586 |
| BspACI | CCGC | 2 cut(s) | 378, 502 |
| BspANI | GGCC | 3 cut(s) | 132, 137, 385 |
| BspCNI | CTCAG | 1 cut(s) | 214 |
| BspDI | ATCGAT | 1 cut(s) | 541 |
| BspEI | TCCGGA | 1 cut(s) | 363 |
| BspHI | TCATGA | 1 cut(s) | 112 |
| BspLI | GGNNCC | 1 cut(s) | 621 |
| BspPI | GGATC | 1 cut(s) | 594 |
| BspT104I | TTCGAA | 1 cut(s) | 418 |
| BsrBI | CCGCTC | 1 cut(s) | 502 |
| BsrGI | TGTACA | 1 cut(s) | 163 |
| BsrI | ACTGG | 3 cut(s) | 244, 436, 711 |
| BssECI | CCNNGG | 2 cut(s) | 261, 262 |
| BssMI | GATC | 4 cut(s) | 225, 291, 508, 586 |
| BssNI | GRCGYC | 1 cut(s) | 79 |
| Bst2UI | CCWGG | 1 cut(s) | 134 |
| Bst4CI | ACNGT | 1 cut(s) | 689 |
| BstACI | GRCGYC | 1 cut(s) | 79 |
| BstAUI | TGTACA | 1 cut(s) | 163 |
| BstBI | TTCGAA | 1 cut(s) | 418 |
| BstC8I | GCNNGC | 1 cut(s) | 6 |
| BstDEI | CTNAG | 2 cut(s) | 9, 222 |
| BstF5I | GGATG | 1 cut(s) | 525 |
| BstHHI | GCGC | 1 cut(s) | 49 |
| BstKTI | GATC | 4 cut(s) | 228, 294, 511, 589 |
| BstMBI | GATC | 4 cut(s) | 225, 291, 508, 586 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 305, 401 |
| BstNI | CCWGG | 1 cut(s) | 134 |
| BstNSI | RCATGY | 2 cut(s) | 170, 285 |
| BstSCI | CCNGG | 3 cut(s) | 132, 260, 261 |
| BstSLI | GKGCMC | 1 cut(s) | 397 |
| BstV1I | GCAGC | 4 cut(s) | 244, 292, 388, 705 |
| BstV2I | GAAGAC | 1 cut(s) | 159 |
| BstX2I | RGATCY | 1 cut(s) | 225 |
| BstYI | RGATCY | 1 cut(s) | 225 |
| Bsu15I | ATCGAT | 1 cut(s) | 541 |
| BsuRI | GGCC | 3 cut(s) | 132, 137, 385 |
| BsuTUI | ATCGAT | 1 cut(s) | 541 |
| BtsCI | GGATG | 1 cut(s) | 525 |
| Cac8I | GCNNGC | 1 cut(s) | 6 |
| CaiI | CAGNNNCTG | 2 cut(s) | 133, 221 |
| CciI | TCATGA | 1 cut(s) | 112 |
| CfoI | GCGC | 1 cut(s) | 49 |
| Cfr13I | GGNCC | 3 cut(s) | 130, 361, 383 |
| Cfr9I | CCCGGG | 1 cut(s) | 261 |
| ClaI | ATCGAT | 1 cut(s) | 541 |
| Csp6I | GTAC | 2 cut(s) | 57, 164 |
| CviAII | CATG | 8 cut(s) | 113, 161, 167, 282, 406, 427, 477, 616 |
| CviQI | GTAC | 2 cut(s) | 57, 164 |
| DdeI | CTNAG | 2 cut(s) | 9, 222 |
| DpnI | GATC | 4 cut(s) | 227, 293, 510, 588 |
| DpnII | GATC | 4 cut(s) | 225, 291, 508, 586 |
| EaeI | YGGCCR | 1 cut(s) | 135 |
| Eco24I | GRGCYC | 1 cut(s) | 575 |
| Eco47I | GGWCC | 1 cut(s) | 361 |
| Eco57I | CTGAAG | 1 cut(s) | 171 |
| Eco88I | CYCGRG | 1 cut(s) | 261 |
| EcoO109I | RGGNCCY | 2 cut(s) | 130, 383 |
| EcoRII | CCWGG | 1 cut(s) | 132 |
| EcoT38I | GRGCYC | 1 cut(s) | 575 |
| FaeI | CATG | 8 cut(s) | 116, 164, 170, 285, 409, 430, 480, 619 |
| FatI | CATG | 8 cut(s) | 112, 160, 166, 281, 405, 426, 476, 615 |
| Fnu4HI | GCNGC | 5 cut(s) | 258, 306, 402, 503, 719 |
| FokI | GGATG | 1 cut(s) | 512 |
| FriOI | GRGCYC | 1 cut(s) | 575 |
| Fsp4HI | GCNGC | 5 cut(s) | 258, 306, 402, 503, 719 |
| FspBI | CTAG | 5 cut(s) | 44, 83, 302, 398, 506 |
| GlaI | GCGC | 1 cut(s) | 48 |
| GluI | GCNGC | 5 cut(s) | 258, 306, 402, 503, 719 |
| HaeIII | GGCC | 3 cut(s) | 132, 137, 385 |
| HapII | CCGG | 2 cut(s) | 262, 364 |
| HhaI | GCGC | 1 cut(s) | 49 |
| Hin1I | GRCGYC | 1 cut(s) | 79 |
| Hin1II | CATG | 8 cut(s) | 116, 164, 170, 285, 409, 430, 480, 619 |
| Hin6I | GCGC | 1 cut(s) | 47 |
| HinP1I | GCGC | 1 cut(s) | 47 |
| HincII | GTYRAC | 1 cut(s) | 287 |
| HindII | GTYRAC | 1 cut(s) | 287 |
| HinfI | GANTC | 4 cut(s) | 65, 122, 543, 581 |
| HpaII | CCGG | 2 cut(s) | 262, 364 |
| Hpy166II | GTNNAC | 4 cut(s) | 147, 287, 596, 647 |
| Hpy188I | TCNGA | 5 cut(s) | 37, 580, 586, 633, 693 |
| Hpy188III | TCNNGA | 2 cut(s) | 113, 364 |
| Hpy8I | GTNNAC | 4 cut(s) | 147, 287, 596, 647 |
| Hpy99I | CGWCG | 1 cut(s) | 81 |
| HpyAV | CCTTC | 1 cut(s) | 264 |
| HpyCH4III | ACNGT | 1 cut(s) | 689 |
| HpyCH4IV | ACGT | 1 cut(s) | 79 |
| HpyCH4V | TGCA | 1 cut(s) | 308 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 305, 401 |
| HpyF3I | CTNAG | 2 cut(s) | 9, 222 |
| HpySE526I | ACGT | 1 cut(s) | 79 |
| Hsp92I | GRCGYC | 1 cut(s) | 79 |
| Hsp92II | CATG | 8 cut(s) | 116, 164, 170, 285, 409, 430, 480, 619 |
| HspAI | GCGC | 1 cut(s) | 47 |
| Kpn2I | TCCGGA | 1 cut(s) | 363 |
| Kzo9I | GATC | 4 cut(s) | 225, 291, 508, 586 |
| Lsp1109I | GCAGC | 4 cut(s) | 244, 292, 388, 705 |
| MaeI | CTAG | 5 cut(s) | 44, 83, 302, 398, 506 |
| MaeII | ACGT | 1 cut(s) | 79 |
| MalI | GATC | 4 cut(s) | 227, 293, 510, 588 |
| MbiI | CCGCTC | 1 cut(s) | 502 |
| MboI | GATC | 4 cut(s) | 225, 291, 508, 586 |
| MboII | GAAGA | 3 cut(s) | 164, 432, 674 |
| MflI | RGATCY | 1 cut(s) | 225 |
| MhlI | GDGCHC | 2 cut(s) | 397, 575 |
| MlsI | TGGCCA | 1 cut(s) | 137 |
| MluNI | TGGCCA | 1 cut(s) | 137 |
| MlyI | GAGTC | 2 cut(s) | 59, 575 |
| MnlI | CCTC | 9 cut(s) | 109, 112, 120, 196, 260, 396, 611, 627, 676 |
| Mox20I | TGGCCA | 1 cut(s) | 137 |
| MroI | TCCGGA | 1 cut(s) | 363 |
| MscI | TGGCCA | 1 cut(s) | 137 |
| MseI | TTAA | 1 cut(s) | 332 |
| MslI | CAYNNNNRTG | 2 cut(s) | 165, 195 |
| Msp20I | TGGCCA | 1 cut(s) | 137 |
| MspI | CCGG | 2 cut(s) | 262, 364 |
| MspR9I | CCNGG | 3 cut(s) | 134, 262, 263 |
| MvaI | CCWGG | 1 cut(s) | 134 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 305, 401 |
| NciI | CCSGG | 2 cut(s) | 262, 263 |
| NdeII | GATC | 4 cut(s) | 225, 291, 508, 586 |
| NlaIII | CATG | 8 cut(s) | 116, 164, 170, 285, 409, 430, 480, 619 |
| NlaIV | GGNNCC | 1 cut(s) | 621 |
| NspI | RCATGY | 2 cut(s) | 170, 285 |
| NspV | TTCGAA | 1 cut(s) | 418 |
| PagI | TCATGA | 1 cut(s) | 112 |
| PciI | ACATGT | 2 cut(s) | 166, 281 |
| PfeI | GAWTC | 2 cut(s) | 122, 543 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 144, 531 |
| PkrI | GCNGC | 5 cut(s) | 259, 307, 403, 504, 720 |
| PleI | GAGTC | 2 cut(s) | 59, 575 |
| PpsI | GAGTC | 2 cut(s) | 59, 575 |
| PscI | ACATGT | 2 cut(s) | 166, 281 |
| Psp6I | CCWGG | 1 cut(s) | 132 |
| PspGI | CCWGG | 1 cut(s) | 132 |
| PspN4I | GGNNCC | 1 cut(s) | 621 |
| PspPI | GGNCC | 3 cut(s) | 130, 361, 383 |
| PstNI | CAGNNNCTG | 2 cut(s) | 133, 221 |
| PsuI | RGATCY | 1 cut(s) | 225 |
| RsaI | GTAC | 2 cut(s) | 58, 165 |
| RsaNI | GTAC | 2 cut(s) | 57, 164 |
| RseI | CAYNNNNRTG | 2 cut(s) | 165, 195 |
| SaqAI | TTAA | 1 cut(s) | 332 |
| SatI | GCNGC | 5 cut(s) | 258, 306, 402, 503, 719 |
| Sau3AI | GATC | 4 cut(s) | 225, 291, 508, 586 |
| Sau96I | GGNCC | 3 cut(s) | 130, 361, 383 |
| SchI | GAGTC | 2 cut(s) | 59, 575 |
| ScrFI | CCNGG | 3 cut(s) | 134, 262, 263 |
| SduI | GDGCHC | 2 cut(s) | 397, 575 |
| SetI | ASST | 8 cut(s) | 82, 207, 211, 259, 307, 403, 630, 652 |
| SfuI | TTCGAA | 1 cut(s) | 418 |
| SinI | GGWCC | 1 cut(s) | 361 |
| SmaI | CCCGGG | 1 cut(s) | 263 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 165, 195 |
| SsiI | CCGC | 2 cut(s) | 378, 502 |
| SspMI | CTAG | 5 cut(s) | 44, 83, 302, 398, 506 |
| StyD4I | CCNGG | 3 cut(s) | 132, 260, 261 |
| TaaI | ACNGT | 1 cut(s) | 689 |
| TaiI | ACGT | 1 cut(s) | 82 |
| TaqI | TCGA | 5 cut(s) | 294, 418, 541, 569, 655 |
| TatI | WGTACW | 1 cut(s) | 163 |
| TauI | GCSGC | 1 cut(s) | 505 |
| TfiI | GAWTC | 2 cut(s) | 122, 543 |
| Tru1I | TTAA | 1 cut(s) | 332 |
| Tru9I | TTAA | 1 cut(s) | 332 |
| TseI | GCWGC | 4 cut(s) | 257, 305, 401, 718 |
| TspDTI | ATGAA | 1 cut(s) | 366 |
| TspMI | CCCGGG | 1 cut(s) | 261 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 144, 531 |
| VpaK11BI | GGWCC | 1 cut(s) | 361 |
| XceI | RCATGY | 2 cut(s) | 170, 285 |
| XmaI | CCCGGG | 1 cut(s) | 261 |
| XspI | CTAG | 5 cut(s) | 44, 83, 302, 398, 506 |
| ZraI | GACGTC | 1 cut(s) | 80 |