ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 120 |
| AccB1I | GGYRCC | 1 cut(s) | 175 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 232, 278 |
| AccI | GTMKAC | 1 cut(s) | 1038 |
| AciI | CCGC | 3 cut(s) | 122, 205, 908 |
| AclWI | GGATC | 6 cut(s) | 66, 144, 379, 511, 524, 967 |
| AcoI | YGGCCR | 1 cut(s) | 483 |
| AcsI | RAATTY | 1 cut(s) | 918 |
| AcvI | CACGTG | 1 cut(s) | 27 |
| AfaI | GTAC | 1 cut(s) | 928 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 211, 232, 278 |
| AflIII | ACRYGT | 1 cut(s) | 897 |
| AgeI | ACCGGT | 1 cut(s) | 186 |
| AgsI | TTSAA | 1 cut(s) | 469 |
| AjiI | CACGTC | 2 cut(s) | 566, 898 |
| AluBI | AGCT | 5 cut(s) | 89, 494, 551, 689, 806 |
| AluI | AGCT | 5 cut(s) | 89, 494, 551, 689, 806 |
| Alw26I | GTCTC | 4 cut(s) | 195, 297, 837, 1006 |
| AlwI | GGATC | 6 cut(s) | 66, 144, 379, 511, 524, 967 |
| AoxI | GGCC | 2 cut(s) | 13, 483 |
| ApeKI | GCWGC | 3 cut(s) | 253, 505, 736 |
| ApoI | RAATTY | 1 cut(s) | 918 |
| AsiGI | ACCGGT | 1 cut(s) | 186 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 200 |
| AspS9I | GGNCC | 3 cut(s) | 14, 30, 839 |
| AsuC2I | CCSGG | 1 cut(s) | 837 |
| AsuHPI | GGTGA | 2 cut(s) | 34, 704 |
| AvaII | GGWCC | 2 cut(s) | 30, 839 |
| BamHI | GGATCC | 1 cut(s) | 516 |
| BanI | GGYRCC | 1 cut(s) | 175 |
| BanII | GRGCYC | 1 cut(s) | 993 |
| BbrPI | CACGTG | 1 cut(s) | 27 |
| BbvI | GCAGC | 3 cut(s) | 265, 517, 748 |
| BccI | CCATC | 4 cut(s) | 255, 527, 832, 839 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 699, 733, 743, 777 |
| BciVI | GTATCC | 1 cut(s) | 105 |
| BcnI | CCSGG | 1 cut(s) | 837 |
| BcoDI | GTCTC | 4 cut(s) | 195, 297, 837, 1006 |
| BfaI | CTAG | 1 cut(s) | 180 |
| BfuAI | ACCTGC | 1 cut(s) | 120 |
| BfuI | GTATCC | 1 cut(s) | 105 |
| BglII | AGATCT | 2 cut(s) | 766, 936 |
| BisI | GCNGC | 3 cut(s) | 254, 506, 737 |
| BlpI | GCTNAGC | 1 cut(s) | 125 |
| BlsI | GCNGC | 3 cut(s) | 255, 507, 738 |
| Bme1390I | CCNGG | 1 cut(s) | 837 |
| Bme18I | GGWCC | 2 cut(s) | 30, 839 |
| BmgBI | CACGTC | 2 cut(s) | 566, 898 |
| BmgT120I | GGNCC | 3 cut(s) | 14, 30, 839 |
| BmiI | GGNNCC | 5 cut(s) | 16, 177, 224, 518, 840 |
| BmrFI | CCNGG | 1 cut(s) | 837 |
| BmsI | GCATC | 3 cut(s) | 255, 366, 807 |
| BpmI | CTGGAG | 1 cut(s) | 209 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 125 |
| BpuEI | CTTGAG | 1 cut(s) | 927 |
| BpuMI | CCSGG | 1 cut(s) | 837 |
| BsaAI | YACGTR | 1 cut(s) | 27 |
| BsaBI | GATNNNNATC | 1 cut(s) | 699 |
| BsaI | GGTCTC | 1 cut(s) | 195 |
| BsaJI | CCNNGG | 2 cut(s) | 45, 741 |
| BsaWI | WCCGGW | 2 cut(s) | 186, 540 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 275, 305 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 211, 232, 278 |
| Bse118I | RCCGGY | 1 cut(s) | 186 |
| Bse3DI | GCAATG | 2 cut(s) | 86, 1036 |
| Bse8I | GATNNNNATC | 1 cut(s) | 699 |
| BseDI | CCNNGG | 2 cut(s) | 45, 741 |
| BseGI | GGATG | 2 cut(s) | 266, 270 |
| BseJI | GATNNNNATC | 1 cut(s) | 699 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 211, 232, 278 |
| BseMI | GCAATG | 2 cut(s) | 86, 1036 |
| BseMII | CTCAG | 1 cut(s) | 308 |
| BseRI | GAGGAG | 1 cut(s) | 227 |
| BseXI | GCAGC | 3 cut(s) | 265, 517, 748 |
| BsgI | GTGCAG | 2 cut(s) | 272, 759 |
| Bsh1285I | CGRYCG | 1 cut(s) | 541 |
| BshFI | GGCC | 2 cut(s) | 15, 485 |
| BshNI | GGYRCC | 1 cut(s) | 175 |
| BshTI | ACCGGT | 1 cut(s) | 186 |
| BsiEI | CGRYCG | 1 cut(s) | 541 |
| BsiSI | CCGG | 4 cut(s) | 187, 541, 638, 836 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 211, 232, 278 |
| BsmAI | GTCTC | 4 cut(s) | 195, 297, 837, 1006 |
| BsmI | GAATGC | 1 cut(s) | 766 |
| BsnI | GGCC | 2 cut(s) | 15, 485 |
| Bso31I | GGTCTC | 1 cut(s) | 195 |
| Bsp1286I | GDGCHC | 1 cut(s) | 993 |
| Bsp1407I | TGTACA | 1 cut(s) | 926 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 125 |
| BspACI | CCGC | 3 cut(s) | 122, 205, 908 |
| BspANI | GGCC | 2 cut(s) | 15, 485 |
| BspCNI | CTCAG | 1 cut(s) | 307 |
| BspHI | TCATGA | 1 cut(s) | 333 |
| BspLI | GGNNCC | 5 cut(s) | 16, 177, 224, 518, 840 |
| BspMI | ACCTGC | 1 cut(s) | 120 |
| BspPI | GGATC | 6 cut(s) | 66, 144, 379, 511, 524, 967 |
| BspT107I | GGYRCC | 1 cut(s) | 175 |
| BspTNI | GGTCTC | 1 cut(s) | 195 |
| BsrDI | GCAATG | 2 cut(s) | 86, 1036 |
| BsrFI | RCCGGY | 1 cut(s) | 186 |
| BsrGI | TGTACA | 1 cut(s) | 926 |
| BssAI | RCCGGY | 1 cut(s) | 186 |
| BssECI | CCNNGG | 2 cut(s) | 45, 741 |
| BssT1I | CCWWGG | 2 cut(s) | 45, 741 |
| Bst4CI | ACNGT | 4 cut(s) | 38, 76, 143, 277 |
| BstAUI | TGTACA | 1 cut(s) | 926 |
| BstBAI | YACGTR | 1 cut(s) | 27 |
| BstC8I | GCNNGC | 1 cut(s) | 734 |
| BstDEI | CTNAG | 3 cut(s) | 125, 294, 828 |
| BstF5I | GGATG | 2 cut(s) | 266, 270 |
| BstMAI | GTCTC | 4 cut(s) | 195, 297, 837, 1006 |
| BstMCI | CGRYCG | 1 cut(s) | 541 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 491 |
| BstNSI | RCATGY | 2 cut(s) | 347, 884 |
| BstSCI | CCNGG | 1 cut(s) | 835 |
| BstV1I | GCAGC | 3 cut(s) | 265, 517, 748 |
| BstX2I | RGATCY | 3 cut(s) | 516, 766, 936 |
| BstYI | RGATCY | 3 cut(s) | 516, 766, 936 |
| BsuI | GTATCC | 1 cut(s) | 105 |
| BsuRI | GGCC | 2 cut(s) | 15, 485 |
| BtrI | CACGTC | 2 cut(s) | 566, 898 |
| BtsCI | GGATG | 2 cut(s) | 266, 270 |
| BtsIMutI | CAGTG | 2 cut(s) | 139, 629 |
| BveI | ACCTGC | 1 cut(s) | 120 |
| Cac8I | GCNNGC | 1 cut(s) | 734 |
| CciI | TCATGA | 1 cut(s) | 333 |
| Cfr10I | RCCGGY | 1 cut(s) | 186 |
| Cfr13I | GGNCC | 3 cut(s) | 14, 30, 839 |
| Csp6I | GTAC | 1 cut(s) | 927 |
| CspAI | ACCGGT | 1 cut(s) | 186 |
| CviAII | CATG | 5 cut(s) | 334, 344, 757, 881, 904 |
| CviQI | GTAC | 1 cut(s) | 927 |
| DdeI | CTNAG | 3 cut(s) | 125, 294, 828 |
| DraI | TTTAAA | 1 cut(s) | 358 |
| EaeI | YGGCCR | 1 cut(s) | 483 |
| Eco130I | CCWWGG | 2 cut(s) | 45, 741 |
| Eco24I | GRGCYC | 1 cut(s) | 993 |
| Eco31I | GGTCTC | 1 cut(s) | 195 |
| Eco47I | GGWCC | 2 cut(s) | 30, 839 |
| Eco72I | CACGTG | 1 cut(s) | 27 |
| EcoT14I | CCWWGG | 2 cut(s) | 45, 741 |
| EcoT38I | GRGCYC | 1 cut(s) | 993 |
| ErhI | CCWWGG | 2 cut(s) | 45, 741 |
| FaeI | CATG | 5 cut(s) | 337, 347, 760, 884, 907 |
| FatI | CATG | 5 cut(s) | 333, 343, 756, 880, 903 |
| FauI | CCCGC | 1 cut(s) | 129 |
| FblI | GTMKAC | 1 cut(s) | 1038 |
| Fnu4HI | GCNGC | 3 cut(s) | 254, 506, 737 |
| FokI | GGATG | 2 cut(s) | 273, 277 |
| FriOI | GRGCYC | 1 cut(s) | 993 |
| Fsp4HI | GCNGC | 3 cut(s) | 254, 506, 737 |
| FspBI | CTAG | 1 cut(s) | 180 |
| GluI | GCNGC | 3 cut(s) | 254, 506, 737 |
| GsuI | CTGGAG | 1 cut(s) | 209 |
| HaeIII | GGCC | 2 cut(s) | 15, 485 |
| HapII | CCGG | 4 cut(s) | 187, 541, 638, 836 |
| Hin1II | CATG | 5 cut(s) | 337, 347, 760, 884, 907 |
| HindIII | AAGCTT | 1 cut(s) | 492 |
| HinfI | GANTC | 9 cut(s) | 21, 284, 460, 589, 614, 674, 716, 788, 947 |
| HpaII | CCGG | 4 cut(s) | 187, 541, 638, 836 |
| HphI | GGTGA | 2 cut(s) | 34, 704 |
| Hpy166II | GTNNAC | 3 cut(s) | 605, 627, 1039 |
| Hpy188III | TCNNGA | 6 cut(s) | 105, 167, 334, 842, 868, 944 |
| Hpy8I | GTNNAC | 3 cut(s) | 605, 627, 1039 |
| Hpy99I | CGWCG | 1 cut(s) | 582 |
| HpyAV | CCTTC | 1 cut(s) | 109 |
| HpyCH4III | ACNGT | 4 cut(s) | 38, 76, 143, 277 |
| HpyCH4IV | ACGT | 4 cut(s) | 26, 364, 565, 897 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 491 |
| HpyF3I | CTNAG | 3 cut(s) | 125, 294, 828 |
| HpySE526I | ACGT | 4 cut(s) | 26, 364, 565, 897 |
| Hsp92II | CATG | 5 cut(s) | 337, 347, 760, 884, 907 |
| LmnI | GCTCC | 2 cut(s) | 49, 228 |
| Lsp1109I | GCAGC | 3 cut(s) | 265, 517, 748 |
| LweI | GCATC | 3 cut(s) | 255, 366, 807 |
| MaeI | CTAG | 1 cut(s) | 180 |
| MaeII | ACGT | 4 cut(s) | 26, 364, 565, 897 |
| MaeIII | GTNAC | 1 cut(s) | 721 |
| MfeI | CAATTG | 2 cut(s) | 711, 1017 |
| MflI | RGATCY | 3 cut(s) | 516, 766, 936 |
| MhlI | GDGCHC | 1 cut(s) | 993 |
| MluCI | AATT | 8 cut(s) | 309, 337, 473, 657, 711, 918, 1017, 1044 |
| MlyI | GAGTC | 2 cut(s) | 293, 725 |
| MmeI | TCCRAC | 5 cut(s) | 57, 114, 284, 296, 378 |
| MnlI | CCTC | 6 cut(s) | 151, 205, 495, 580, 699, 1060 |
| MroXI | GAANNNNTTC | 1 cut(s) | 200 |
| MseI | TTAA | 5 cut(s) | 312, 357, 527, 656, 984 |
| MslI | CAYNNNNRTG | 1 cut(s) | 564 |
| MspI | CCGG | 4 cut(s) | 187, 541, 638, 836 |
| MspR9I | CCNGG | 1 cut(s) | 837 |
| MunI | CAATTG | 2 cut(s) | 711, 1017 |
| Mva1269I | GAATGC | 1 cut(s) | 766 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 491 |
| NciI | CCSGG | 1 cut(s) | 837 |
| NlaIII | CATG | 5 cut(s) | 337, 347, 760, 884, 907 |
| NlaIV | GGNNCC | 5 cut(s) | 16, 177, 224, 518, 840 |
| NspI | RCATGY | 2 cut(s) | 347, 884 |
| PagI | TCATGA | 1 cut(s) | 333 |
| PctI | GAATGC | 1 cut(s) | 766 |
| PdmI | GAANNNNTTC | 1 cut(s) | 200 |
| PfeI | GAWTC | 7 cut(s) | 21, 460, 589, 614, 674, 788, 947 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 232, 278 |
| PinAI | ACCGGT | 1 cut(s) | 186 |
| PkrI | GCNGC | 3 cut(s) | 255, 507, 738 |
| PleI | GAGTC | 2 cut(s) | 292, 724 |
| PmaCI | CACGTG | 1 cut(s) | 27 |
| PmlI | CACGTG | 1 cut(s) | 27 |
| PpsI | GAGTC | 2 cut(s) | 292, 724 |
| Ppu21I | YACGTR | 1 cut(s) | 27 |
| PspCI | CACGTG | 1 cut(s) | 27 |
| PspN4I | GGNNCC | 5 cut(s) | 16, 177, 224, 518, 840 |
| PspPI | GGNCC | 3 cut(s) | 14, 30, 839 |
| PsuI | RGATCY | 3 cut(s) | 516, 766, 936 |
| RsaI | GTAC | 1 cut(s) | 928 |
| RsaNI | GTAC | 1 cut(s) | 927 |
| RseI | CAYNNNNRTG | 1 cut(s) | 564 |
| SaqAI | TTAA | 5 cut(s) | 312, 357, 527, 656, 984 |
| SatI | GCNGC | 3 cut(s) | 254, 506, 737 |
| Sau96I | GGNCC | 3 cut(s) | 14, 30, 839 |
| SchI | GAGTC | 2 cut(s) | 293, 725 |
| ScrFI | CCNGG | 1 cut(s) | 837 |
| SduI | GDGCHC | 1 cut(s) | 993 |
| SfaNI | GCATC | 3 cut(s) | 255, 366, 807 |
| SinI | GGWCC | 2 cut(s) | 30, 839 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 564 |
| SmlI | CTYRAG | 1 cut(s) | 942 |
| SmoI | CTYRAG | 1 cut(s) | 942 |
| Sse9I | AATT | 8 cut(s) | 309, 337, 473, 657, 711, 918, 1017, 1044 |
| SsiI | CCGC | 3 cut(s) | 122, 205, 908 |
| SspMI | CTAG | 1 cut(s) | 180 |
| StyD4I | CCNGG | 1 cut(s) | 835 |
| StyI | CCWWGG | 2 cut(s) | 45, 741 |
| TaaI | ACNGT | 4 cut(s) | 38, 76, 143, 277 |
| TaiI | ACGT | 4 cut(s) | 29, 367, 568, 900 |
| TaqI | TCGA | 5 cut(s) | 61, 106, 577, 609, 685 |
| TaqII | GACCGA | 1 cut(s) | 386 |
| TasI | AATT | 8 cut(s) | 309, 337, 473, 657, 711, 918, 1017, 1044 |
| TatI | WGTACW | 1 cut(s) | 926 |
| TfiI | GAWTC | 7 cut(s) | 21, 460, 589, 614, 674, 788, 947 |
| Tru1I | TTAA | 5 cut(s) | 312, 357, 527, 656, 984 |
| Tru9I | TTAA | 5 cut(s) | 312, 357, 527, 656, 984 |
| TscAI | CASTG | 2 cut(s) | 146, 629 |
| TseI | GCWGC | 3 cut(s) | 253, 505, 736 |
| TspDTI | ATGAA | 6 cut(s) | 350, 425, 486, 504, 687, 773 |
| TspRI | CASTG | 2 cut(s) | 146, 629 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 232, 278 |
| VpaK11BI | GGWCC | 2 cut(s) | 30, 839 |
| XapI | RAATTY | 1 cut(s) | 918 |
| XceI | RCATGY | 2 cut(s) | 347, 884 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 52 |
| XmiI | GTMKAC | 1 cut(s) | 1038 |
| XmnI | GAANNNNTTC | 1 cut(s) | 200 |
| XspI | CTAG | 1 cut(s) | 180 |