ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 46 |
| Acc36I | ACCTGC | 2 cut(s) | 46, 1435 |
| AccI | GTMKAC | 2 cut(s) | 628, 1661 |
| AciI | CCGC | 4 cut(s) | 154, 740, 1639, 1802 |
| AclWI | GGATC | 1 cut(s) | 43 |
| AcoI | YGGCCR | 1 cut(s) | 1269 |
| AcsI | RAATTY | 3 cut(s) | 1240, 1459, 1553 |
| AcuI | CTGAAG | 2 cut(s) | 972, 1157 |
| AfaI | GTAC | 3 cut(s) | 534, 1738, 1898 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 589, 1010 |
| AflIII | ACRYGT | 1 cut(s) | 846 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 696 |
| AluBI | AGCT | 7 cut(s) | 239, 335, 544, 732, 1364, 1511, 1576 |
| AluI | AGCT | 7 cut(s) | 239, 335, 544, 732, 1364, 1511, 1576 |
| Alw21I | GWGCWC | 1 cut(s) | 174 |
| Alw26I | GTCTC | 1 cut(s) | 1011 |
| AlwI | GGATC | 1 cut(s) | 43 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1886 |
| AoxI | GGCC | 3 cut(s) | 124, 137, 1269 |
| ApeKI | GCWGC | 2 cut(s) | 1609, 1886 |
| ApoI | RAATTY | 3 cut(s) | 1240, 1459, 1553 |
| AseI | ATTAAT | 1 cut(s) | 1254 |
| AspLEI | GCGC | 1 cut(s) | 1197 |
| AsuHPI | GGTGA | 4 cut(s) | 103, 188, 299, 784 |
| AsuII | TTCGAA | 2 cut(s) | 330, 1245 |
| AxyI | CCTNAGG | 1 cut(s) | 584 |
| BaeGI | GKGCMC | 1 cut(s) | 430 |
| BalI | TGGCCA | 1 cut(s) | 1271 |
| BanII | GRGCYC | 1 cut(s) | 1402 |
| BbsI | GAAGAC | 2 cut(s) | 27, 1368 |
| Bbv12I | GWGCWC | 1 cut(s) | 174 |
| BbvI | GCAGC | 2 cut(s) | 1596, 1873 |
| BccI | CCATC | 7 cut(s) | 23, 67, 198, 915, 1424, 1820, 1824 |
| BceAI | ACGGC | 1 cut(s) | 111 |
| BclI | TGATCA | 1 cut(s) | 862 |
| BcoDI | GTCTC | 1 cut(s) | 1011 |
| BfaI | CTAG | 3 cut(s) | 1010, 1163, 1292 |
| BfmI | CTRYAG | 1 cut(s) | 1887 |
| BfuAI | ACCTGC | 2 cut(s) | 46, 1435 |
| BisI | GCNGC | 2 cut(s) | 1610, 1887 |
| BlsI | GCNGC | 2 cut(s) | 1611, 1888 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 696 |
| BmrI | ACTGGG | 1 cut(s) | 1544 |
| BmsI | GCATC | 3 cut(s) | 141, 885, 1873 |
| BmuI | ACTGGG | 1 cut(s) | 1544 |
| BoxI | GACNNNNGTC | 2 cut(s) | 12, 183 |
| BpiI | GAAGAC | 2 cut(s) | 27, 1368 |
| Bpu14I | TTCGAA | 2 cut(s) | 330, 1245 |
| BpuEI | CTTGAG | 1 cut(s) | 566 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 368, 398 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 589, 1010 |
| Bse1I | ACTGG | 1 cut(s) | 1539 |
| Bse21I | CCTNAGG | 1 cut(s) | 584 |
| Bse3DI | GCAATG | 2 cut(s) | 1097, 1269 |
| BseGI | GGATG | 8 cut(s) | 598, 999, 1326, 1423, 1544, 1831, 1835, 1867 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 589, 1010 |
| BseMI | GCAATG | 2 cut(s) | 1097, 1269 |
| BseMII | CTCAG | 5 cut(s) | 161, 575, 684, 705, 1808 |
| BseNI | ACTGG | 1 cut(s) | 1539 |
| BseRI | GAGGAG | 4 cut(s) | 101, 389, 554, 1186 |
| BseSI | GKGCMC | 1 cut(s) | 430 |
| BseXI | GCAGC | 2 cut(s) | 1596, 1873 |
| BseYI | CCCAGC | 1 cut(s) | 1186 |
| BsgI | GTGCAG | 2 cut(s) | 671, 1143 |
| BshFI | GGCC | 3 cut(s) | 126, 139, 1271 |
| BsiHKAI | GWGCWC | 1 cut(s) | 174 |
| BslFI | GGGAC | 2 cut(s) | 454, 565 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 589, 1010 |
| BsmAI | GTCTC | 1 cut(s) | 1011 |
| BsmBI | CGTCTC | 1 cut(s) | 1011 |
| BsmFI | GGGAC | 2 cut(s) | 454, 565 |
| BsnI | GGCC | 3 cut(s) | 126, 139, 1271 |
| Bsp119I | TTCGAA | 2 cut(s) | 330, 1245 |
| Bsp1286I | GDGCHC | 3 cut(s) | 174, 430, 1402 |
| Bsp1407I | TGTACA | 1 cut(s) | 532 |
| Bsp143I | GATC | 6 cut(s) | 35, 114, 226, 270, 726, 862 |
| BspACI | CCGC | 4 cut(s) | 154, 740, 1639, 1802 |
| BspANI | GGCC | 3 cut(s) | 126, 139, 1271 |
| BspCNI | CTCAG | 5 cut(s) | 160, 576, 685, 706, 1807 |
| BspHI | TCATGA | 2 cut(s) | 117, 1426 |
| BspMAI | CTGCAG | 1 cut(s) | 1891 |
| BspMI | ACCTGC | 2 cut(s) | 46, 1435 |
| BspPI | GGATC | 1 cut(s) | 43 |
| BspT104I | TTCGAA | 2 cut(s) | 330, 1245 |
| BsrDI | GCAATG | 2 cut(s) | 1097, 1269 |
| BsrGI | TGTACA | 1 cut(s) | 532 |
| BsrI | ACTGG | 1 cut(s) | 1539 |
| BssMI | GATC | 6 cut(s) | 35, 114, 226, 270, 726, 862 |
| BssNAI | GTATAC | 1 cut(s) | 629 |
| Bst1107I | GTATAC | 1 cut(s) | 629 |
| Bst4CI | ACNGT | 7 cut(s) | 182, 196, 445, 486, 821, 955, 1498 |
| Bst6I | CTCTTC | 2 cut(s) | 1163, 1314 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1886 |
| BstAUI | TGTACA | 1 cut(s) | 532 |
| BstBI | TTCGAA | 2 cut(s) | 330, 1245 |
| BstC8I | GCNNGC | 4 cut(s) | 798, 1299, 1641, 1746 |
| BstDEI | CTNAG | 5 cut(s) | 147, 584, 693, 714, 1794 |
| BstF5I | GGATG | 8 cut(s) | 598, 999, 1326, 1423, 1544, 1831, 1835, 1867 |
| BstHHI | GCGC | 1 cut(s) | 1197 |
| BstKTI | GATC | 6 cut(s) | 38, 117, 229, 273, 729, 865 |
| BstMAI | GTCTC | 1 cut(s) | 1011 |
| BstMBI | GATC | 6 cut(s) | 35, 114, 226, 270, 726, 862 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 1192, 1268, 1886 |
| BstNSI | RCATGY | 4 cut(s) | 850, 1301, 1647, 1748 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 12, 183 |
| BstSFI | CTRYAG | 1 cut(s) | 1887 |
| BstSLI | GKGCMC | 1 cut(s) | 430 |
| BstV1I | GCAGC | 2 cut(s) | 1596, 1873 |
| BstV2I | GAAGAC | 2 cut(s) | 27, 1368 |
| BstX2I | RGATCY | 1 cut(s) | 35 |
| BstYI | RGATCY | 1 cut(s) | 35 |
| BstZ17I | GTATAC | 1 cut(s) | 629 |
| Bsu36I | CCTNAGG | 1 cut(s) | 584 |
| BsuRI | GGCC | 3 cut(s) | 126, 139, 1271 |
| BtgZI | GCGATG | 1 cut(s) | 615 |
| BtsCI | GGATG | 8 cut(s) | 598, 999, 1326, 1423, 1544, 1831, 1835, 1867 |
| BtsIMutI | CAGTG | 3 cut(s) | 491, 826, 951 |
| BveI | ACCTGC | 2 cut(s) | 46, 1435 |
| Cac8I | GCNNGC | 4 cut(s) | 798, 1299, 1641, 1746 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1886 |
| CciI | TCATGA | 2 cut(s) | 117, 1426 |
| CfoI | GCGC | 1 cut(s) | 1197 |
| Csp6I | GTAC | 3 cut(s) | 533, 1737, 1897 |
| CviAII | CATG | 9 cut(s) | 118, 423, 847, 866, 1298, 1427, 1644, 1745, 1914 |
| CviQI | GTAC | 3 cut(s) | 533, 1737, 1897 |
| DdeI | CTNAG | 5 cut(s) | 147, 584, 693, 714, 1794 |
| DpnI | GATC | 6 cut(s) | 37, 116, 228, 272, 728, 864 |
| DpnII | GATC | 6 cut(s) | 35, 114, 226, 270, 726, 862 |
| DriI | GACNNNNNGTC | 1 cut(s) | 696 |
| EaeI | YGGCCR | 1 cut(s) | 1269 |
| Eam1104I | CTCTTC | 2 cut(s) | 1163, 1314 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 696 |
| EarI | CTCTTC | 2 cut(s) | 1163, 1314 |
| Eco24I | GRGCYC | 1 cut(s) | 1402 |
| Eco57I | CTGAAG | 2 cut(s) | 972, 1157 |
| Eco81I | CCTNAGG | 1 cut(s) | 584 |
| EcoT38I | GRGCYC | 1 cut(s) | 1402 |
| Esp3I | CGTCTC | 1 cut(s) | 1011 |
| FaeI | CATG | 9 cut(s) | 121, 426, 850, 869, 1301, 1430, 1647, 1748, 1917 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 528, 560, 1130, 1162 |
| FaqI | GGGAC | 2 cut(s) | 454, 565 |
| FatI | CATG | 9 cut(s) | 117, 422, 846, 865, 1297, 1426, 1643, 1744, 1913 |
| FauI | CCCGC | 2 cut(s) | 147, 1632 |
| FbaI | TGATCA | 1 cut(s) | 862 |
| FblI | GTMKAC | 2 cut(s) | 628, 1661 |
| Fnu4HI | GCNGC | 2 cut(s) | 1610, 1887 |
| FokI | GGATG | 8 cut(s) | 605, 1006, 1333, 1430, 1551, 1838, 1842, 1874 |
| FriOI | GRGCYC | 1 cut(s) | 1402 |
| Fsp4HI | GCNGC | 2 cut(s) | 1610, 1887 |
| FspBI | CTAG | 3 cut(s) | 1010, 1163, 1292 |
| GlaI | GCGC | 1 cut(s) | 1196 |
| GluI | GCNGC | 2 cut(s) | 1610, 1887 |
| GsaI | CCCAGC | 1 cut(s) | 1190 |
| HaeIII | GGCC | 3 cut(s) | 126, 139, 1271 |
| HhaI | GCGC | 1 cut(s) | 1197 |
| Hin1II | CATG | 9 cut(s) | 121, 426, 850, 869, 1301, 1430, 1647, 1748, 1917 |
| Hin6I | GCGC | 1 cut(s) | 1195 |
| HinP1I | GCGC | 1 cut(s) | 1195 |
| HincII | GTYRAC | 2 cut(s) | 1208, 1662 |
| HindII | GTYRAC | 2 cut(s) | 1208, 1662 |
| HindIII | AAGCTT | 1 cut(s) | 333 |
| HinfI | GANTC | 5 cut(s) | 105, 766, 1373, 1580, 1790 |
| HphI | GGTGA | 4 cut(s) | 103, 188, 299, 784 |
| Hpy166II | GTNNAC | 5 cut(s) | 629, 775, 1208, 1501, 1662 |
| Hpy188I | TCNGA | 7 cut(s) | 150, 268, 702, 1084, 1137, 1682, 1789 |
| Hpy188III | TCNNGA | 9 cut(s) | 17, 39, 109, 118, 884, 1237, 1427, 1478, 1796 |
| Hpy8I | GTNNAC | 5 cut(s) | 629, 775, 1208, 1501, 1662 |
| Hpy99I | CGWCG | 3 cut(s) | 132, 1686, 1872 |
| HpyAV | CCTTC | 7 cut(s) | 389, 525, 544, 633, 1067, 1392, 1538 |
| HpyCH4III | ACNGT | 7 cut(s) | 182, 196, 445, 486, 821, 955, 1498 |
| HpyCH4IV | ACGT | 3 cut(s) | 24, 966, 1899 |
| HpyCH4V | TGCA | 9 cut(s) | 245, 259, 422, 652, 898, 1102, 1160, 1551, 1889 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 1192, 1268, 1886 |
| HpyF3I | CTNAG | 5 cut(s) | 147, 584, 693, 714, 1794 |
| HpySE526I | ACGT | 3 cut(s) | 24, 966, 1899 |
| Hsp92II | CATG | 9 cut(s) | 121, 426, 850, 869, 1301, 1430, 1647, 1748, 1917 |
| HspAI | GCGC | 1 cut(s) | 1195 |
| Ksp22I | TGATCA | 1 cut(s) | 862 |
| Kzo9I | GATC | 6 cut(s) | 35, 114, 226, 270, 726, 862 |
| LmnI | GCTCC | 1 cut(s) | 541 |
| Lsp1109I | GCAGC | 2 cut(s) | 1596, 1873 |
| LweI | GCATC | 3 cut(s) | 141, 885, 1873 |
| MaeI | CTAG | 3 cut(s) | 1010, 1163, 1292 |
| MaeII | ACGT | 3 cut(s) | 24, 966, 1899 |
| MaeIII | GTNAC | 3 cut(s) | 176, 982, 1067 |
| MalI | GATC | 6 cut(s) | 37, 116, 228, 272, 728, 864 |
| MboI | GATC | 6 cut(s) | 35, 114, 226, 270, 726, 862 |
| MboII | GAAGA | 7 cut(s) | 32, 82, 124, 1150, 1180, 1301, 1368 |
| MflI | RGATCY | 1 cut(s) | 35 |
| MhlI | GDGCHC | 3 cut(s) | 174, 430, 1402 |
| MlsI | TGGCCA | 1 cut(s) | 1271 |
| MluNI | TGGCCA | 1 cut(s) | 1271 |
| MlyI | GAGTC | 3 cut(s) | 760, 1382, 1784 |
| MmeI | TCCRAC | 2 cut(s) | 725, 1705 |
| Mox20I | TGGCCA | 1 cut(s) | 1271 |
| MscI | TGGCCA | 1 cut(s) | 1271 |
| MseI | TTAA | 5 cut(s) | 633, 932, 1254, 1530, 1815 |
| MslI | CAYNNNNRTG | 1 cut(s) | 956 |
| Msp20I | TGGCCA | 1 cut(s) | 1271 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 1192, 1268, 1886 |
| NdeII | GATC | 6 cut(s) | 35, 114, 226, 270, 726, 862 |
| NlaIII | CATG | 9 cut(s) | 121, 426, 850, 869, 1301, 1430, 1647, 1748, 1917 |
| NmuCI | GTSAC | 1 cut(s) | 176 |
| NspI | RCATGY | 4 cut(s) | 850, 1301, 1647, 1748 |
| NspV | TTCGAA | 2 cut(s) | 330, 1245 |
| PaeI | GCATGC | 2 cut(s) | 1301, 1748 |
| PagI | TCATGA | 2 cut(s) | 117, 1426 |
| PaqCI | CACCTGC | 1 cut(s) | 46 |
| PciI | ACATGT | 1 cut(s) | 846 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 226 |
| PfeI | GAWTC | 2 cut(s) | 105, 1580 |
| PkrI | GCNGC | 2 cut(s) | 1611, 1888 |
| PleI | GAGTC | 3 cut(s) | 760, 1381, 1784 |
| PpsI | GAGTC | 3 cut(s) | 760, 1381, 1784 |
| PscI | ACATGT | 1 cut(s) | 846 |
| PshAI | GACNNNNGTC | 2 cut(s) | 12, 183 |
| PshBI | ATTAAT | 1 cut(s) | 1254 |
| PspFI | CCCAGC | 1 cut(s) | 1186 |
| PstI | CTGCAG | 1 cut(s) | 1891 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1886 |
| PsuI | RGATCY | 1 cut(s) | 35 |
| RsaI | GTAC | 3 cut(s) | 534, 1738, 1898 |
| RsaNI | GTAC | 3 cut(s) | 533, 1737, 1897 |
| RseI | CAYNNNNRTG | 1 cut(s) | 956 |
| SalI | GTCGAC | 1 cut(s) | 1660 |
| SaqAI | TTAA | 5 cut(s) | 633, 932, 1254, 1530, 1815 |
| SatI | GCNGC | 2 cut(s) | 1610, 1887 |
| Sau3AI | GATC | 6 cut(s) | 35, 114, 226, 270, 726, 862 |
| SchI | GAGTC | 3 cut(s) | 760, 1382, 1784 |
| SduI | GDGCHC | 3 cut(s) | 174, 430, 1402 |
| SfaNI | GCATC | 3 cut(s) | 141, 885, 1873 |
| SfcI | CTRYAG | 1 cut(s) | 1887 |
| SfuI | TTCGAA | 2 cut(s) | 330, 1245 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 956 |
| SmlI | CTYRAG | 1 cut(s) | 545 |
| SmoI | CTYRAG | 1 cut(s) | 545 |
| SphI | GCATGC | 2 cut(s) | 1301, 1748 |
| SsiI | CCGC | 4 cut(s) | 154, 740, 1639, 1802 |
| SspI | AATATT | 2 cut(s) | 567, 1654 |
| SspMI | CTAG | 3 cut(s) | 1010, 1163, 1292 |
| TaaI | ACNGT | 7 cut(s) | 182, 196, 445, 486, 821, 955, 1498 |
| TaiI | ACGT | 3 cut(s) | 27, 969, 1902 |
| TaqI | TCGA | 7 cut(s) | 191, 229, 330, 344, 1245, 1463, 1661 |
| TaqII | GACCGA | 1 cut(s) | 739 |
| TatI | WGTACW | 1 cut(s) | 532 |
| TfiI | GAWTC | 2 cut(s) | 105, 1580 |
| Tru1I | TTAA | 5 cut(s) | 633, 932, 1254, 1530, 1815 |
| Tru9I | TTAA | 5 cut(s) | 633, 932, 1254, 1530, 1815 |
| TscAI | CASTG | 3 cut(s) | 491, 826, 958 |
| TseFI | GTSAC | 1 cut(s) | 176 |
| TseI | GCWGC | 2 cut(s) | 1609, 1886 |
| Tsp45I | GTSAC | 1 cut(s) | 176 |
| TspDTI | ATGAA | 9 cut(s) | 134, 797, 825, 1010, 1025, 1134, 1340, 1415, 1533 |
| TspGWI | ACGGA | 2 cut(s) | 1333, 1699 |
| TspRI | CASTG | 3 cut(s) | 491, 826, 958 |
| VspI | ATTAAT | 1 cut(s) | 1254 |
| XapI | RAATTY | 3 cut(s) | 1240, 1459, 1553 |
| XceI | RCATGY | 4 cut(s) | 850, 1301, 1647, 1748 |
| XmiI | GTMKAC | 2 cut(s) | 628, 1661 |
| XspI | CTAG | 3 cut(s) | 1010, 1163, 1292 |