Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 110 |
| AccI | GTMKAC | 1 cut(s) | 68 |
| AciI | CCGC | 1 cut(s) | 53 |
| AclWI | GGATC | 1 cut(s) | 396 |
| AcoI | YGGCCR | 1 cut(s) | 288 |
| AcuI | CTGAAG | 1 cut(s) | 78 |
| AcvI | CACGTG | 1 cut(s) | 152 |
| AcyI | GRCGYC | 1 cut(s) | 241 |
| AfaI | GTAC | 3 cut(s) | 118, 207, 370 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 323 |
| AflIII | ACRYGT | 1 cut(s) | 151 |
| AgsI | TTSAA | 3 cut(s) | 40, 257, 341 |
| AjnI | CCWGG | 1 cut(s) | 125 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 83, 115 |
| AluBI | AGCT | 1 cut(s) | 437 |
| AluI | AGCT | 1 cut(s) | 437 |
| Alw21I | GWGCWC | 2 cut(s) | 274, 439 |
| AlwI | GGATC | 1 cut(s) | 396 |
| AoxI | GGCC | 2 cut(s) | 123, 288 |
| ApeKI | GCWGC | 2 cut(s) | 217, 348 |
| AspS9I | GGNCC | 1 cut(s) | 181 |
| AsuII | TTCGAA | 1 cut(s) | 83 |
| AvaII | GGWCC | 1 cut(s) | 181 |
| BaeGI | GKGCMC | 1 cut(s) | 113 |
| BanI | GGYRCC | 1 cut(s) | 110 |
| BanII | GRGCYC | 1 cut(s) | 439 |
| BbrPI | CACGTG | 1 cut(s) | 152 |
| BbsI | GAAGAC | 2 cut(s) | 368, 391 |
| Bbv12I | GWGCWC | 2 cut(s) | 274, 439 |
| BbvI | GCAGC | 2 cut(s) | 229, 335 |
| BccI | CCATC | 1 cut(s) | 174 |
| BcgI | CGANNNNNNTGC | 1 cut(s) | 27 |
| BciT130I | CCWGG | 1 cut(s) | 127 |
| BclI | TGATCA | 1 cut(s) | 156 |
| BfaI | CTAG | 3 cut(s) | 171, 380, 443 |
| BisI | GCNGC | 3 cut(s) | 54, 218, 349 |
| BlsI | GCNGC | 3 cut(s) | 55, 219, 350 |
| Bme1390I | CCNGG | 1 cut(s) | 127 |
| Bme18I | GGWCC | 1 cut(s) | 181 |
| BmgT120I | GGNCC | 1 cut(s) | 181 |
| BmiI | GGNNCC | 2 cut(s) | 112, 330 |
| BmrFI | CCNGG | 1 cut(s) | 127 |
| BpiI | GAAGAC | 2 cut(s) | 368, 391 |
| Bpu14I | TTCGAA | 1 cut(s) | 83 |
| Bsa29I | ATCGAT | 1 cut(s) | 391 |
| BsaAI | YACGTR | 1 cut(s) | 152 |
| BsaHI | GRCGYC | 1 cut(s) | 241 |
| BsaJI | CCNNGG | 1 cut(s) | 291 |
| BsaWI | WCCGGW | 1 cut(s) | 471 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 323 |
| Bse118I | RCCGGY | 1 cut(s) | 121 |
| BseBI | CCWGG | 1 cut(s) | 127 |
| BseCI | ATCGAT | 1 cut(s) | 391 |
| BseDI | CCNNGG | 1 cut(s) | 291 |
| BseGI | GGATG | 1 cut(s) | 166 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 323 |
| BseRI | GAGGAG | 1 cut(s) | 314 |
| BseSI | GKGCMC | 1 cut(s) | 113 |
| BseXI | GCAGC | 2 cut(s) | 229, 335 |
| Bsh1285I | CGRYCG | 1 cut(s) | 179 |
| BshFI | GGCC | 2 cut(s) | 125, 290 |
| BshNI | GGYRCC | 1 cut(s) | 110 |
| BshVI | ATCGAT | 1 cut(s) | 391 |
| BsiEI | CGRYCG | 1 cut(s) | 179 |
| BsiHKAI | GWGCWC | 2 cut(s) | 274, 439 |
| BsiSI | CCGG | 2 cut(s) | 122, 472 |
| BslFI | GGGAC | 1 cut(s) | 173 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 323 |
| BsmFI | GGGAC | 1 cut(s) | 173 |
| BsnI | GGCC | 2 cut(s) | 125, 290 |
| Bsp119I | TTCGAA | 1 cut(s) | 83 |
| Bsp1286I | GDGCHC | 3 cut(s) | 113, 274, 439 |
| Bsp1407I | TGTACA | 1 cut(s) | 116 |
| Bsp143I | GATC | 4 cut(s) | 156, 176, 388, 392 |
| BspACI | CCGC | 1 cut(s) | 53 |
| BspANI | GGCC | 2 cut(s) | 125, 290 |
| BspDI | ATCGAT | 1 cut(s) | 391 |
| BspLI | GGNNCC | 2 cut(s) | 112, 330 |
| BspPI | GGATC | 1 cut(s) | 396 |
| BspT104I | TTCGAA | 1 cut(s) | 83 |
| BspT107I | GGYRCC | 1 cut(s) | 110 |
| BsrFI | RCCGGY | 1 cut(s) | 121 |
| BsrGI | TGTACA | 1 cut(s) | 116 |
| BssAI | RCCGGY | 1 cut(s) | 121 |
| BssECI | CCNNGG | 1 cut(s) | 291 |
| BssMI | GATC | 4 cut(s) | 156, 176, 388, 392 |
| BssNAI | GTATAC | 1 cut(s) | 69 |
| BssNI | GRCGYC | 1 cut(s) | 241 |
| BssT1I | CCWWGG | 1 cut(s) | 291 |
| Bst1107I | GTATAC | 1 cut(s) | 69 |
| Bst2UI | CCWGG | 1 cut(s) | 127 |
| Bst4CI | ACNGT | 1 cut(s) | 345 |
| Bst6I | CTCTTC | 1 cut(s) | 252 |
| BstACI | GRCGYC | 1 cut(s) | 241 |
| BstAUI | TGTACA | 1 cut(s) | 116 |
| BstBAI | YACGTR | 1 cut(s) | 152 |
| BstBI | TTCGAA | 1 cut(s) | 83 |
| BstC8I | GCNNGC | 1 cut(s) | 6 |
| BstF5I | GGATG | 1 cut(s) | 166 |
| BstKTI | GATC | 4 cut(s) | 159, 179, 391, 395 |
| BstMBI | GATC | 4 cut(s) | 156, 176, 388, 392 |
| BstMCI | CGRYCG | 1 cut(s) | 179 |
| BstNI | CCWGG | 1 cut(s) | 127 |
| BstSCI | CCNGG | 1 cut(s) | 125 |
| BstSLI | GKGCMC | 1 cut(s) | 113 |
| BstV1I | GCAGC | 2 cut(s) | 229, 335 |
| BstV2I | GAAGAC | 2 cut(s) | 368, 391 |
| BstZ17I | GTATAC | 1 cut(s) | 69 |
| Bsu15I | ATCGAT | 1 cut(s) | 391 |
| BsuRI | GGCC | 2 cut(s) | 125, 290 |
| BsuTUI | ATCGAT | 1 cut(s) | 391 |
| BtsCI | GGATG | 1 cut(s) | 166 |
| Cac8I | GCNNGC | 1 cut(s) | 6 |
| Cfr10I | RCCGGY | 1 cut(s) | 121 |
| Cfr13I | GGNCC | 1 cut(s) | 181 |
| ClaI | ATCGAT | 1 cut(s) | 391 |
| CseI | GACGC | 1 cut(s) | 230 |
| Csp6I | GTAC | 3 cut(s) | 117, 206, 369 |
| CviAII | CATG | 5 cut(s) | 22, 46, 72, 185, 227 |
| CviJI | RGCY | 8 cut(s) | 20, 56, 125, 253, 290, 305, 437, 463 |
| CviKI_1 | RGCY | 8 cut(s) | 20, 56, 125, 253, 290, 305, 437, 463 |
| CviQI | GTAC | 3 cut(s) | 117, 206, 369 |
| DpnI | GATC | 4 cut(s) | 158, 178, 390, 394 |
| DpnII | GATC | 4 cut(s) | 156, 176, 388, 392 |
| EaeI | YGGCCR | 1 cut(s) | 288 |
| Eam1104I | CTCTTC | 1 cut(s) | 252 |
| EarI | CTCTTC | 1 cut(s) | 252 |
| Ecl136II | GAGCTC | 1 cut(s) | 437 |
| Eco130I | CCWWGG | 1 cut(s) | 291 |
| Eco24I | GRGCYC | 1 cut(s) | 439 |
| Eco47I | GGWCC | 1 cut(s) | 181 |
| Eco53kI | GAGCTC | 1 cut(s) | 437 |
| Eco57I | CTGAAG | 1 cut(s) | 78 |
| Eco72I | CACGTG | 1 cut(s) | 152 |
| EcoICRI | GAGCTC | 1 cut(s) | 437 |
| EcoRII | CCWGG | 1 cut(s) | 125 |
| EcoT14I | CCWWGG | 1 cut(s) | 291 |
| EcoT38I | GRGCYC | 1 cut(s) | 439 |
| ErhI | CCWWGG | 1 cut(s) | 291 |
| FaeI | CATG | 5 cut(s) | 25, 49, 75, 188, 230 |
| FaiI | YATR | 8 cut(s) | 23, 47, 69, 73, 186, 228, 319, 335 |
| FaqI | GGGAC | 1 cut(s) | 173 |
| FatI | CATG | 5 cut(s) | 21, 45, 71, 184, 226 |
| FbaI | TGATCA | 1 cut(s) | 156 |
| FblI | GTMKAC | 1 cut(s) | 68 |
| Fnu4HI | GCNGC | 3 cut(s) | 54, 218, 349 |
| FokI | GGATG | 1 cut(s) | 153 |
| FriOI | GRGCYC | 1 cut(s) | 439 |
| Fsp4HI | GCNGC | 3 cut(s) | 54, 218, 349 |
| FspBI | CTAG | 3 cut(s) | 171, 380, 443 |
| GluI | GCNGC | 3 cut(s) | 54, 218, 349 |
| HaeIII | GGCC | 2 cut(s) | 125, 290 |
| HapII | CCGG | 2 cut(s) | 122, 472 |
| HgaI | GACGC | 1 cut(s) | 230 |
| Hin1I | GRCGYC | 1 cut(s) | 241 |
| Hin1II | CATG | 5 cut(s) | 25, 49, 75, 188, 230 |
| HinfI | GANTC | 1 cut(s) | 80 |
| HpaII | CCGG | 2 cut(s) | 122, 472 |
| Hpy166II | GTNNAC | 2 cut(s) | 69, 119 |
| Hpy188I | TCNGA | 3 cut(s) | 28, 136, 181 |
| Hpy188III | TCNNGA | 3 cut(s) | 14, 275, 380 |
| Hpy8I | GTNNAC | 2 cut(s) | 69, 119 |
| HpyAV | CCTTC | 4 cut(s) | 53, 85, 272, 419 |
| HpyCH4III | ACNGT | 1 cut(s) | 345 |
| HpyCH4IV | ACGT | 1 cut(s) | 151 |
| HpyCH4V | TGCA | 4 cut(s) | 4, 351, 457, 496 |
| HpySE526I | ACGT | 1 cut(s) | 151 |
| Hsp92I | GRCGYC | 1 cut(s) | 241 |
| Hsp92II | CATG | 5 cut(s) | 25, 49, 75, 188, 230 |
| Ksp22I | TGATCA | 1 cut(s) | 156 |
| Kzo9I | GATC | 4 cut(s) | 156, 176, 388, 392 |
| LmnI | GCTCC | 1 cut(s) | 214 |
| LpnPI | CCDG | 7 cut(s) | 91, 112, 127, 135, 139, 235, 485 |
| Lsp1109I | GCAGC | 2 cut(s) | 229, 335 |
| MaeI | CTAG | 3 cut(s) | 171, 380, 443 |
| MaeII | ACGT | 1 cut(s) | 151 |
| MaeIII | GTNAC | 1 cut(s) | 32 |
| MalI | GATC | 4 cut(s) | 158, 178, 390, 394 |
| MboI | GATC | 4 cut(s) | 156, 176, 388, 392 |
| MboII | GAAGA | 3 cut(s) | 269, 368, 391 |
| MhlI | GDGCHC | 3 cut(s) | 113, 274, 439 |
| MluCI | AATT | 1 cut(s) | 245 |
| MmeI | TCCRAC | 2 cut(s) | 6, 81 |
| MnlI | CCTC | 6 cut(s) | 196, 201, 292, 295, 317, 409 |
| MseI | TTAA | 1 cut(s) | 489 |
| MspI | CCGG | 2 cut(s) | 122, 472 |
| MspR9I | CCNGG | 1 cut(s) | 127 |
| MvaI | CCWGG | 1 cut(s) | 127 |
| NdeII | GATC | 4 cut(s) | 156, 176, 388, 392 |
| NlaIII | CATG | 5 cut(s) | 25, 49, 75, 188, 230 |
| NlaIV | GGNNCC | 2 cut(s) | 112, 330 |
| NspV | TTCGAA | 1 cut(s) | 83 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 238 |
| PfeI | GAWTC | 1 cut(s) | 80 |
| PflFI | GACNNNGTC | 1 cut(s) | 185 |
| PkrI | GCNGC | 3 cut(s) | 55, 219, 350 |
| Ple19I | CGATCG | 1 cut(s) | 179 |
| PmaCI | CACGTG | 1 cut(s) | 152 |
| PmlI | CACGTG | 1 cut(s) | 152 |
| Ppu21I | YACGTR | 1 cut(s) | 152 |
| Psp124BI | GAGCTC | 1 cut(s) | 439 |
| Psp6I | CCWGG | 1 cut(s) | 125 |
| PspCI | CACGTG | 1 cut(s) | 152 |
| PspGI | CCWGG | 1 cut(s) | 125 |
| PspN4I | GGNNCC | 2 cut(s) | 112, 330 |
| PspPI | GGNCC | 1 cut(s) | 181 |
| PsyI | GACNNNGTC | 1 cut(s) | 185 |
| PvuI | CGATCG | 1 cut(s) | 179 |
| RsaI | GTAC | 3 cut(s) | 118, 207, 370 |
| RsaNI | GTAC | 3 cut(s) | 117, 206, 369 |
| SacI | GAGCTC | 1 cut(s) | 439 |
| SaqAI | TTAA | 1 cut(s) | 489 |
| SatI | GCNGC | 3 cut(s) | 54, 218, 349 |
| Sau3AI | GATC | 4 cut(s) | 156, 176, 388, 392 |
| Sau96I | GGNCC | 1 cut(s) | 181 |
| ScrFI | CCNGG | 1 cut(s) | 127 |
| SduI | GDGCHC | 3 cut(s) | 113, 274, 439 |
| SetI | ASST | 8 cut(s) | 101, 116, 154, 207, 283, 297, 334, 439 |
| SfuI | TTCGAA | 1 cut(s) | 83 |
| SinI | GGWCC | 1 cut(s) | 181 |
| Sse9I | AATT | 1 cut(s) | 245 |
| SsiI | CCGC | 1 cut(s) | 53 |
| SspMI | CTAG | 3 cut(s) | 171, 380, 443 |
| SstI | GAGCTC | 1 cut(s) | 439 |
| StyD4I | CCNGG | 1 cut(s) | 125 |
| StyI | CCWWGG | 1 cut(s) | 291 |
| TaaI | ACNGT | 1 cut(s) | 345 |
| TaiI | ACGT | 1 cut(s) | 154 |
| TaqI | TCGA | 3 cut(s) | 83, 175, 391 |
| TasI | AATT | 1 cut(s) | 245 |
| TatI | WGTACW | 1 cut(s) | 116 |
| TauI | GCSGC | 1 cut(s) | 56 |
| TfiI | GAWTC | 1 cut(s) | 80 |
| Tru1I | TTAA | 1 cut(s) | 489 |
| Tru9I | TTAA | 1 cut(s) | 489 |
| TseI | GCWGC | 2 cut(s) | 217, 348 |
| TspDTI | ATGAA | 1 cut(s) | 243 |
| TspGWI | ACGGA | 2 cut(s) | 336, 392 |
| Tth111I | GACNNNGTC | 1 cut(s) | 185 |
| VpaK11BI | GGWCC | 1 cut(s) | 181 |
| XbaI | TCTAGA | 1 cut(s) | 379 |
| XmiI | GTMKAC | 1 cut(s) | 68 |
| XspI | CTAG | 3 cut(s) | 171, 380, 443 |