Rorug07G0334000

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000591
Physical Location & Seq
Reverse (-)
36663181 .. 36663807
627 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0334000.1

Sequence Viewer

Length: 627 bp
ATGACTTCGGCGATCCTCTCTTCATCGCTGACGTCCCTCCCGCTCACCTCTACTGTCGGCTCTTCATCTGCCACGGACCTTTCTTCCACCTTGTCTCAGCTGCAACTACAAACGGATTCCATACTCACCACGGTTGCTGCCTTGCAAGCTCACCAAACCTCCTTTCAAAATCAGATCGCTGCTCAGATGGCTACCTTTCAACAGTCGTTTTTCGACAACCTCCTTCTGCTGTCGCCTCCGCCACTCTCGGCAGCCTCCACCGCTCATACCGCTCAAATTAGCTTTGGCTCCATTCCTAATACGTCACCTTCTCGGACAACTGTGGGCATGGCCAACCCCCTCCTCCACTCACTTCCCAACCCTCTCCCACCCTCCAGAGTGTTTCTTTTCCTTTTGCTTCCACCGTTTTTACCCCTTTTTCCATCCAACCCTCTTTCGAATCCCAGACAAGCTCACCTTACAACCACTCGTTCATTCGCAACTCCACTCCCCCACACTTTGGCAACTCTGACATACCAATTTACATACCTCCCAAGGTTGAGTTTCCTCGCTTCCACGGTGATGATGTTGTTGGTTGGCCCGCCTGGCCGAGCGATACCTTTGCGCTCACCGAGTTCCCTTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

208

Amino Acids

22.1

Weight (kDa)

11.27

Isoelectric Point (pI)

54.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03566
fragaria_vesca FvH4_2g12622 FvH4_2g12642 FvH4_2g13902 FvH4_3g05011 FvH4_3g18961 FvH4_3g31940 FvH4_4g08421 FvH4_4g21351 FvH4_5g28071 FvH4_5g34871 FvH4_6g21812 FvH4_6g30441 FvH4_6g33631
rosa_chinensis RchiOBHm_Chr1g0320221 RchiOBHm_Chr1g0356521 RchiOBHm_Chr4g0389021 RchiOBHm_Chr5g0020651 RchiOBHm_Chr5g0027511
rosa_laevigata RLG00000002966 RLG00000019504
rosa_multiflora Rmu_co7963640.1_g000001 Rmu_co7988458.1_g000001 Rmu_co8109512.1_g000001 Rmu_co8136160.1_g000001 Rmu_co8253655.1_g000001 Rmu_sc0000388.1_g000040 Rmu_sc0000540.1_g000056 Rmu_sc0000574.1_g000013 Rmu_sc0000623.1_g000001 Rmu_sc0000795.1_g000005 Rmu_sc0000795.1_g000006 Rmu_sc0001063.1_g000001 Rmu_sc0002116.1_g000001 Rmu_sc0002192.1_g000012 Rmu_sc0002640.1_g000015 Rmu_sc0003337.1_g000039 Rmu_sc0004298.1_g000003 Rmu_sc0004771.1_g000001 Rmu_sc0006119.1_g000010 Rmu_sc0006633.1_g000007 Rmu_sc0007025.1_g000016 Rmu_sc0007221.1_g000002 Rmu_sc0007222.1_g000002 Rmu_sc0007806.1_g000016 Rmu_sc0008241.1_g000018 Rmu_sc0008348.1_g000001 Rmu_sc0009034.1_g000001 Rmu_sc0009955.1_g000004 Rmu_sc0018325.1_g000009 Rmu_sc0028328.1_g000002 Rmu_sc0030178.1_g000001 Rmu_sc0034381.1_g000001 Rmu_sc0041085.1_g000001 Rmu_sc0041085.1_g000002
rosa_roxburghii Rroxscaffold_3G00233230 Rroxscaffold_7G00193120 Rroxscaffold_7G00194820
rosa_rugosa Rorug01G0017000 Rorug01G0036400 Rorug01G0062600 Rorug01G0118500 Rorug02G0351500 Rorug02G0497600 Rorug03G0233200 Rorug03G0279500 Rorug03G0347600 Rorug04G0077100 Rorug04G0077200 Rorug04G0210900 Rorug05G0206900 Rorug07G0202900 Rorug07G0334000
rosa_samantha Rh2CG195700 Rh4DG035800
rosa_wichuraiana Rw0G005080 Rw0G013600 Rw2G020080 Rw2G024380 Rw5G002230 Rw5G036790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 35
AccB7I CCANNNNNTGG 1 cut(s) 499
AccBSI CCGCTC 3 cut(s) 43, 263, 272
AciI CCGC 5 cut(s) 41, 239, 261, 270, 581
AclWI GGATC 1 cut(s) 7
AcoI YGGCCR 2 cut(s) 330, 586
AcyI GRCGYC 1 cut(s) 32
AfiI CCNNNNNNNGG 1 cut(s) 499
AgsI TTSAA 2 cut(s) 167, 200
AjnI CCWGG 1 cut(s) 583
AjuI GAANNNNNNNTTGG 2 cut(s) 147, 179
AluBI AGCT 4 cut(s) 100, 149, 282, 452
AluI AGCT 4 cut(s) 100, 149, 282, 452
Alw26I GTCTC 1 cut(s) 99
AlwI GGATC 1 cut(s) 7
AoxI GGCC 3 cut(s) 330, 577, 586
ApeKI GCWGC 4 cut(s) 100, 137, 179, 251
AspLEI GCGC 1 cut(s) 606
AspS9I GGNCC 2 cut(s) 76, 578
AsuHPI GGTGA 7 cut(s) 37, 118, 143, 297, 446, 571, 600
AsuII TTCGAA 1 cut(s) 437
AvaII GGWCC 1 cut(s) 76
BalI TGGCCA 1 cut(s) 332
BbvI GCAGC 4 cut(s) 87, 124, 166, 263
BccI CCATC 2 cut(s) 181, 430
BcgI CGANNNNNNTGC 2 cut(s) 583, 617
BciT130I CCWGG 1 cut(s) 585
BcoDI GTCTC 1 cut(s) 99
BglI GCCNNNNNGGC 1 cut(s) 585
BisI GCNGC 4 cut(s) 101, 138, 180, 252
BlsI GCNGC 4 cut(s) 102, 139, 181, 253
Bme1390I CCNGG 1 cut(s) 585
Bme18I GGWCC 1 cut(s) 76
BmgT120I GGNCC 2 cut(s) 76, 578
BmiI GGNNCC 1 cut(s) 289
BmrFI CCNGG 1 cut(s) 585
BpmI CTGGAG 1 cut(s) 358
Bpu14I TTCGAA 1 cut(s) 437
BsaHI GRCGYC 1 cut(s) 32
BsaJI CCNNGG 4 cut(s) 72, 129, 533, 555
BsaXI ACNNNNNCTCC 2 cut(s) 143, 173
Bsc4I CCNNNNNNNGG 1 cut(s) 499
BseBI CCWGG 1 cut(s) 585
BseDI CCNNGG 4 cut(s) 72, 129, 533, 555
BseGI GGATG 1 cut(s) 422
BseLI CCNNNNNNNGG 1 cut(s) 499
BseMII CTCAG 2 cut(s) 110, 197
BseRI GAGGAG 1 cut(s) 332
BseXI GCAGC 4 cut(s) 87, 124, 166, 263
BshFI GGCC 3 cut(s) 332, 579, 588
BslFI GGGAC 1 cut(s) 19
BslI CCNNNNNNNGG 1 cut(s) 499
BsmAI GTCTC 1 cut(s) 99
BsmFI GGGAC 1 cut(s) 19
BsnI GGCC 3 cut(s) 332, 579, 588
Bsp119I TTCGAA 1 cut(s) 437
Bsp143I GATC 2 cut(s) 12, 174
BspACI CCGC 5 cut(s) 41, 239, 261, 270, 581
BspANI GGCC 3 cut(s) 332, 579, 588
BspCNI CTCAG 2 cut(s) 109, 196
BspLI GGNNCC 1 cut(s) 289
BspPI GGATC 1 cut(s) 7
BspQI GCTCTTC 1 cut(s) 67
BspT104I TTCGAA 1 cut(s) 437
BsrBI CCGCTC 3 cut(s) 43, 263, 272
BssECI CCNNGG 4 cut(s) 72, 129, 533, 555
BssMI GATC 2 cut(s) 12, 174
BssNI GRCGYC 1 cut(s) 32
BssT1I CCWWGG 1 cut(s) 533
Bst2UI CCWGG 1 cut(s) 585
Bst4CI ACNGT 6 cut(s) 55, 133, 204, 322, 405, 559
Bst6I CTCTTC 2 cut(s) 25, 67
BstACI GRCGYC 1 cut(s) 32
BstBI TTCGAA 1 cut(s) 437
BstC8I GCNNGC 2 cut(s) 147, 581
BstDEI CTNAG 2 cut(s) 96, 183
BstDSI CCRYGG 3 cut(s) 72, 129, 555
BstF5I GGATG 1 cut(s) 422
BstHHI GCGC 1 cut(s) 606
BstKTI GATC 2 cut(s) 15, 177
BstMAI GTCTC 1 cut(s) 99
BstMBI GATC 2 cut(s) 12, 174
BstMWI GCNNNNNNNGC 5 cut(s) 146, 188, 260, 269, 585
BstNI CCWGG 1 cut(s) 585
BstSCI CCNGG 1 cut(s) 583
BstV1I GCAGC 4 cut(s) 87, 124, 166, 263
BsuRI GGCC 3 cut(s) 332, 579, 588
BtgI CCRYGG 3 cut(s) 72, 129, 555
BtgZI GCGATG 1 cut(s) 9
BtsCI GGATG 1 cut(s) 422
Cac8I GCNNGC 2 cut(s) 147, 581
CfoI GCGC 1 cut(s) 606
Cfr13I GGNCC 2 cut(s) 76, 578
CviAII CATG 2 cut(s) 328, 624
DdeI CTNAG 2 cut(s) 96, 183
DpnI GATC 2 cut(s) 14, 176
DpnII GATC 2 cut(s) 12, 174
EaeI YGGCCR 2 cut(s) 330, 586
Eam1104I CTCTTC 2 cut(s) 25, 67
EarI CTCTTC 2 cut(s) 25, 67
EciI GGCGGA 1 cut(s) 228
Eco130I CCWWGG 1 cut(s) 533
Eco47I GGWCC 1 cut(s) 76
EcoRII CCWGG 1 cut(s) 583
EcoT14I CCWWGG 1 cut(s) 533
ErhI CCWWGG 1 cut(s) 533
FaeI CATG 2 cut(s) 331, 627
FaiI YATR 6 cut(s) 122, 267, 329, 514, 526, 625
FalI AAGNNNNNCTT 2 cut(s) 441, 473
FaqI GGGAC 1 cut(s) 19
FatI CATG 2 cut(s) 327, 623
FauI CCCGC 2 cut(s) 48, 588
Fnu4HI GCNGC 4 cut(s) 101, 138, 180, 252
FokI GGATG 1 cut(s) 409
Fsp4HI GCNGC 4 cut(s) 101, 138, 180, 252
GlaI GCGC 1 cut(s) 605
GluI GCNGC 4 cut(s) 101, 138, 180, 252
GsuI CTGGAG 1 cut(s) 358
HaeIII GGCC 3 cut(s) 332, 579, 588
HhaI GCGC 1 cut(s) 606
Hin1I GRCGYC 1 cut(s) 32
Hin1II CATG 2 cut(s) 331, 627
Hin6I GCGC 1 cut(s) 604
HinP1I GCGC 1 cut(s) 604
HinfI GANTC 2 cut(s) 116, 439
HphI GGTGA 7 cut(s) 37, 118, 143, 297, 446, 571, 600
Hpy188I TCNGA 4 cut(s) 174, 186, 315, 510
Hpy188III TCNNGA 1 cut(s) 375
HpyAV CCTTC 2 cut(s) 233, 318
HpyCH4III ACNGT 6 cut(s) 55, 133, 204, 322, 405, 559
HpyCH4IV ACGT 2 cut(s) 32, 302
HpyCH4V TGCA 3 cut(s) 103, 145, 623
HpyF10VI GCNNNNNNNGC 5 cut(s) 146, 188, 260, 269, 585
HpyF3I CTNAG 2 cut(s) 96, 183
HpySE526I ACGT 2 cut(s) 32, 302
Hsp92I GRCGYC 1 cut(s) 32
Hsp92II CATG 2 cut(s) 331, 627
HspAI GCGC 1 cut(s) 604
Kzo9I GATC 2 cut(s) 12, 174
LguI GCTCTTC 1 cut(s) 67
LmnI GCTCC 1 cut(s) 293
LpnPI CCDG 4 cut(s) 388, 457, 570, 597
Lsp1109I GCAGC 4 cut(s) 87, 124, 166, 263
MaeII ACGT 2 cut(s) 32, 302
MaeIII GTNAC 1 cut(s) 303
MalI GATC 2 cut(s) 14, 176
MbiI CCGCTC 3 cut(s) 43, 263, 272
MboI GATC 2 cut(s) 12, 174
MboII GAAGA 3 cut(s) 12, 54, 75
MlsI TGGCCA 1 cut(s) 332
MluCI AATT 2 cut(s) 276, 518
MluNI TGGCCA 1 cut(s) 332
MmeI TCCRAC 1 cut(s) 450
Mox20I TGGCCA 1 cut(s) 332
MscI TGGCCA 1 cut(s) 332
MslI CAYNNNNRTG 1 cut(s) 560
Msp20I TGGCCA 1 cut(s) 332
MspA1I CMGCKG 1 cut(s) 100
MspR9I CCNGG 1 cut(s) 585
MvaI CCWGG 1 cut(s) 585
MwoI GCNNNNNNNGC 5 cut(s) 146, 188, 260, 269, 585
NdeII GATC 2 cut(s) 12, 174
NlaIII CATG 2 cut(s) 331, 627
NlaIV GGNNCC 1 cut(s) 289
NmeAIII GCCGAG 2 cut(s) 227, 614
NmuCI GTSAC 1 cut(s) 303
NspV TTCGAA 1 cut(s) 437
PciSI GCTCTTC 1 cut(s) 67
PfeI GAWTC 2 cut(s) 116, 439
PflMI CCANNNNNTGG 1 cut(s) 499
PkrI GCNGC 4 cut(s) 102, 139, 181, 253
Psp6I CCWGG 1 cut(s) 583
PspGI CCWGG 1 cut(s) 583
PspN4I GGNNCC 1 cut(s) 289
PspPI GGNCC 2 cut(s) 76, 578
PvuII CAGCTG 1 cut(s) 100
RseI CAYNNNNRTG 1 cut(s) 560
SapI GCTCTTC 1 cut(s) 67
SatI GCNGC 4 cut(s) 101, 138, 180, 252
Sau3AI GATC 2 cut(s) 12, 174
Sau96I GGNCC 2 cut(s) 76, 578
ScrFI CCNGG 1 cut(s) 585
SfiI GGCCNNNNNGGCC 1 cut(s) 585
SfuI TTCGAA 1 cut(s) 437
SinI GGWCC 1 cut(s) 76
SmiMI CAYNNNNRTG 1 cut(s) 560
Sse9I AATT 2 cut(s) 276, 518
SsiI CCGC 5 cut(s) 41, 239, 261, 270, 581
StyD4I CCNGG 1 cut(s) 583
StyI CCWWGG 1 cut(s) 533
TaaI ACNGT 6 cut(s) 55, 133, 204, 322, 405, 559
TaiI ACGT 2 cut(s) 35, 305
TaqI TCGA 2 cut(s) 213, 437
TasI AATT 2 cut(s) 276, 518
TfiI GAWTC 2 cut(s) 116, 439
TseFI GTSAC 1 cut(s) 303
TseI GCWGC 4 cut(s) 100, 137, 179, 251
Tsp45I GTSAC 1 cut(s) 303
TspDTI ATGAA 3 cut(s) 12, 54, 462
TspGWI ACGGA 2 cut(s) 89, 128
Van91I CCANNNNNTGG 1 cut(s) 499
VpaK11BI GGWCC 1 cut(s) 76
ZraI GACGTC 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.