FvH4_4g08421

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000591
Physical Location & Seq
Forward (+)
8420639 .. 8420981
343 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g08421.t1

Sequence Viewer

Length: 303 bp
ATGGCCAGCACCGCGACCCTCGAAGACGACCGACGCTTGAAGCCTGACCGATTCTCGACACTTGTCGATCGACGACGACTTCTGATGGTCGACGATGAAGATTTTCGACGATCGATGACGAAGTCAAACAGTAGCAGAATCCACACCGATTCTCTTTCACGATTCAGTCTGAGACAAATCCGAGCTCTCTGCTTTGGAATAAGATATGGAAAGCTCCTGTGCCAGGTAAAATTAAGGTGTGTGCATGAAAAGCAGCCTCCAATATCCTTCCCACAAGAAGTAGGCTACGTGAACGTGGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

11.7

Weight (kDa)

9.93

Isoelectric Point (pI)

50.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03566
fragaria_vesca FvH4_2g12622 FvH4_2g12642 FvH4_2g13902 FvH4_3g05011 FvH4_3g18961 FvH4_3g31940 FvH4_4g08421 FvH4_4g21351 FvH4_5g28071 FvH4_5g34871 FvH4_6g21812 FvH4_6g30441 FvH4_6g33631
rosa_chinensis RchiOBHm_Chr1g0320221 RchiOBHm_Chr1g0356521 RchiOBHm_Chr4g0389021 RchiOBHm_Chr5g0020651 RchiOBHm_Chr5g0027511
rosa_laevigata RLG00000002966 RLG00000019504
rosa_multiflora Rmu_co7963640.1_g000001 Rmu_co7988458.1_g000001 Rmu_co8109512.1_g000001 Rmu_co8136160.1_g000001 Rmu_co8253655.1_g000001 Rmu_sc0000388.1_g000040 Rmu_sc0000540.1_g000056 Rmu_sc0000574.1_g000013 Rmu_sc0000623.1_g000001 Rmu_sc0000795.1_g000005 Rmu_sc0000795.1_g000006 Rmu_sc0001063.1_g000001 Rmu_sc0002116.1_g000001 Rmu_sc0002192.1_g000012 Rmu_sc0002640.1_g000015 Rmu_sc0003337.1_g000039 Rmu_sc0004298.1_g000003 Rmu_sc0004771.1_g000001 Rmu_sc0006119.1_g000010 Rmu_sc0006633.1_g000007 Rmu_sc0007025.1_g000016 Rmu_sc0007221.1_g000002 Rmu_sc0007222.1_g000002 Rmu_sc0007806.1_g000016 Rmu_sc0008241.1_g000018 Rmu_sc0008348.1_g000001 Rmu_sc0009034.1_g000001 Rmu_sc0009955.1_g000004 Rmu_sc0018325.1_g000009 Rmu_sc0028328.1_g000002 Rmu_sc0030178.1_g000001 Rmu_sc0034381.1_g000001 Rmu_sc0041085.1_g000001 Rmu_sc0041085.1_g000002
rosa_roxburghii Rroxscaffold_3G00233230 Rroxscaffold_7G00193120 Rroxscaffold_7G00194820
rosa_rugosa Rorug01G0017000 Rorug01G0036400 Rorug01G0062600 Rorug01G0118500 Rorug02G0351500 Rorug02G0497600 Rorug03G0233200 Rorug03G0279500 Rorug03G0347600 Rorug04G0077100 Rorug04G0077200 Rorug04G0210900 Rorug05G0206900 Rorug07G0202900 Rorug07G0334000
rosa_samantha Rh2CG195700 Rh4DG035800
rosa_wichuraiana Rw0G005080 Rw0G013600 Rw2G020080 Rw2G024380 Rw5G002230 Rw5G036790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 90
AccII CGCG 1 cut(s) 14
AciI CCGC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 3
AfiI CCNNNNNNNGG 1 cut(s) 223
AgsI TTSAA 1 cut(s) 40
AjnI CCWGG 1 cut(s) 222
AluBI AGCT 2 cut(s) 185, 214
AluI AGCT 2 cut(s) 185, 214
Alw21I GWGCWC 1 cut(s) 187
Alw26I GTCTC 1 cut(s) 166
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 253
Asp700I GAANNNNTTC 1 cut(s) 102
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 187
BbsI GAAGAC 1 cut(s) 30
Bbv12I GWGCWC 1 cut(s) 187
BbvI GCAGC 1 cut(s) 265
BccI CCATC 1 cut(s) 79
BcgI CGANNNNNNTGC 2 cut(s) 171, 205
BciT130I CCWGG 1 cut(s) 224
BcoDI GTCTC 1 cut(s) 166
BisI GCNGC 1 cut(s) 254
BlsI GCNGC 1 cut(s) 255
Bme1390I CCNGG 1 cut(s) 224
BmrFI CCNGG 1 cut(s) 224
BoxI GACNNNNGTC 1 cut(s) 62
BpiI GAAGAC 1 cut(s) 30
Bsa29I ATCGAT 1 cut(s) 113
BsaAI YACGTR 1 cut(s) 289
Bsc4I CCNNNNNNNGG 1 cut(s) 223
BseBI CCWGG 1 cut(s) 224
BseCI ATCGAT 1 cut(s) 113
BseLI CCNNNNNNNGG 1 cut(s) 223
BseMII CTCAG 1 cut(s) 161
BseXI GCAGC 1 cut(s) 265
Bsh1236I CGCG 1 cut(s) 14
Bsh1285I CGRYCG 3 cut(s) 31, 70, 113
BshFI GGCC 1 cut(s) 5
BshVI ATCGAT 1 cut(s) 113
BsiEI CGRYCG 3 cut(s) 31, 70, 113
BsiHKAI GWGCWC 1 cut(s) 187
BslI CCNNNNNNNGG 1 cut(s) 223
BsmAI GTCTC 1 cut(s) 166
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 187
Bsp143I GATC 2 cut(s) 67, 110
BspACI CCGC 1 cut(s) 12
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 162
BspDI ATCGAT 1 cut(s) 113
BspFNI CGCG 1 cut(s) 14
BssMI GATC 2 cut(s) 67, 110
Bst2UI CCWGG 1 cut(s) 224
Bst4CI ACNGT 1 cut(s) 131
BstBAI YACGTR 1 cut(s) 289
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 1 cut(s) 170
BstENI CCTNNNNNAGG 1 cut(s) 221
BstFNI CGCG 1 cut(s) 14
BstKTI GATC 2 cut(s) 70, 113
BstMAI GTCTC 1 cut(s) 166
BstMBI GATC 2 cut(s) 67, 110
BstMCI CGRYCG 3 cut(s) 31, 70, 113
BstMWI GCNNNNNNNGC 2 cut(s) 11, 250
BstNI CCWGG 1 cut(s) 224
BstPAI GACNNNNGTC 1 cut(s) 62
BstSCI CCNGG 1 cut(s) 222
BstUI CGCG 1 cut(s) 14
BstV1I GCAGC 1 cut(s) 265
BstV2I GAAGAC 1 cut(s) 30
Bsu15I ATCGAT 1 cut(s) 113
BsuRI GGCC 1 cut(s) 5
BsuTUI ATCGAT 1 cut(s) 113
Cac8I GCNNGC 1 cut(s) 7
ClaI ATCGAT 1 cut(s) 113
CseI GACGC 1 cut(s) 42
CviAII CATG 1 cut(s) 245
CviJI RGCY 6 cut(s) 5, 43, 185, 214, 256, 285
CviKI_1 RGCY 6 cut(s) 5, 43, 185, 214, 256, 285
DdeI CTNAG 1 cut(s) 170
DpnI GATC 2 cut(s) 69, 112
DpnII GATC 2 cut(s) 67, 110
EaeI YGGCCR 1 cut(s) 3
Ecl136II GAGCTC 1 cut(s) 185
Eco24I GRGCYC 1 cut(s) 187
Eco53kI GAGCTC 1 cut(s) 185
EcoICRI GAGCTC 1 cut(s) 185
EcoNI CCTNNNNNAGG 1 cut(s) 221
EcoRII CCWGG 1 cut(s) 222
EcoT38I GRGCYC 1 cut(s) 187
FaeI CATG 1 cut(s) 248
FaiI YATR 2 cut(s) 207, 246
FatI CATG 1 cut(s) 244
FblI GTMKAC 1 cut(s) 90
Fnu4HI GCNGC 1 cut(s) 254
FriOI GRGCYC 1 cut(s) 187
Fsp4HI GCNGC 1 cut(s) 254
GluI GCNGC 1 cut(s) 254
HaeIII GGCC 1 cut(s) 5
HgaI GACGC 1 cut(s) 42
Hin1II CATG 1 cut(s) 248
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HinfI GANTC 4 cut(s) 51, 138, 149, 162
Hpy166II GTNNAC 2 cut(s) 91, 292
Hpy188I TCNGA 3 cut(s) 84, 171, 182
Hpy188III TCNNGA 2 cut(s) 55, 159
Hpy8I GTNNAC 2 cut(s) 91, 292
Hpy99I CGWCG 5 cut(s) 36, 75, 78, 95, 111
HpyAV CCTTC 1 cut(s) 277
HpyCH4III ACNGT 1 cut(s) 131
HpyCH4IV ACGT 2 cut(s) 288, 294
HpyCH4V TGCA 1 cut(s) 244
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 250
HpyF3I CTNAG 1 cut(s) 170
HpySE526I ACGT 2 cut(s) 288, 294
Hsp92II CATG 1 cut(s) 248
Kzo9I GATC 2 cut(s) 67, 110
LmnI GCTCC 1 cut(s) 219
LpnPI CCDG 5 cut(s) 19, 57, 209, 230, 236
Lsp1109I GCAGC 1 cut(s) 265
MaeII ACGT 2 cut(s) 288, 294
MalI GATC 2 cut(s) 69, 112
MboI GATC 2 cut(s) 67, 110
MboII GAAGA 2 cut(s) 35, 110
MhlI GDGCHC 1 cut(s) 187
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 230
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 2 cut(s) 29, 267
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 102
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 233
Msp20I TGGCCA 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 224
MvaI CCWGG 1 cut(s) 224
MvnI CGCG 1 cut(s) 14
MwoI GCNNNNNNNGC 2 cut(s) 11, 250
NdeII GATC 2 cut(s) 67, 110
NlaIII CATG 1 cut(s) 248
PdmI GAANNNNTTC 1 cut(s) 102
PfeI GAWTC 4 cut(s) 51, 138, 149, 162
PflFI GACNNNGTC 1 cut(s) 121
PkrI GCNGC 1 cut(s) 255
Ple19I CGATCG 2 cut(s) 70, 113
Ppu21I YACGTR 1 cut(s) 289
PshAI GACNNNNGTC 1 cut(s) 62
Psp124BI GAGCTC 1 cut(s) 187
Psp6I CCWGG 1 cut(s) 222
PspGI CCWGG 1 cut(s) 222
PsyI GACNNNGTC 1 cut(s) 121
PvuI CGATCG 2 cut(s) 70, 113
SacI GAGCTC 1 cut(s) 187
SalI GTCGAC 1 cut(s) 89
SaqAI TTAA 1 cut(s) 233
SatI GCNGC 1 cut(s) 254
Sau3AI GATC 2 cut(s) 67, 110
ScrFI CCNGG 1 cut(s) 224
SduI GDGCHC 1 cut(s) 187
SetI ASST 6 cut(s) 187, 216, 228, 239, 291, 297
Sse9I AATT 1 cut(s) 230
SsiI CCGC 1 cut(s) 12
SstI GAGCTC 1 cut(s) 187
StyD4I CCNGG 1 cut(s) 222
TaaI ACNGT 1 cut(s) 131
TaiI ACGT 2 cut(s) 291, 297
TaqI TCGA 7 cut(s) 21, 56, 66, 70, 90, 106, 113
TaqII GACCGA 2 cut(s) 45, 63
TasI AATT 1 cut(s) 230
TfiI GAWTC 4 cut(s) 51, 138, 149, 162
Tru1I TTAA 1 cut(s) 233
Tru9I TTAA 1 cut(s) 233
TseI GCWGC 1 cut(s) 253
TspDTI ATGAA 2 cut(s) 111, 261
Tth111I GACNNNGTC 1 cut(s) 121
XagI CCTNNNNNAGG 1 cut(s) 221
XmiI GTMKAC 1 cut(s) 90
XmnI GAANNNNTTC 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.