Rmu_co7963640.1_g000001

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co7963640.1
OG0000591
Physical Location & Seq
Forward (+)
8 .. 504
497 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co7963640.1_g000001.1.cds

Sequence Viewer

Length: 497 bp
atgcaaggtagagatattcttcgtgctggcattcgacgtcatgttggcaatggattaactactaatatctggtccaacccatggctaatgggaaaggacttgagttcctttcggtctgcggctgctgcggtggtagccgacctgttcctttctccaggtgagtggaatttaccactgttatctagcttgcttcctccacgtcttgtccgcaaaatccaagagttacctctaagtccccacagccatggtgatcggtggatctgggggggtgacaagaagggcagatttacgatgaaatctgcatattatatagctaggggcagaattttggaggatgattctcctactcctaaccctagtgctctcctatggaagcaactgtggaaagctcaagtgccagggaatgtgaaagtgtgtgcttggaaagcagctaccaatattcttcctacacgaagtcggcttagtgagagaggtattgatattgatacccaatgccc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

166

Amino Acids

18.56

Weight (kDa)

10.22

Isoelectric Point (pI)

49.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03566
fragaria_vesca FvH4_2g12622 FvH4_2g12642 FvH4_2g13902 FvH4_3g05011 FvH4_3g18961 FvH4_3g31940 FvH4_4g08421 FvH4_4g21351 FvH4_5g28071 FvH4_5g34871 FvH4_6g21812 FvH4_6g30441 FvH4_6g33631
rosa_chinensis RchiOBHm_Chr1g0320221 RchiOBHm_Chr1g0356521 RchiOBHm_Chr4g0389021 RchiOBHm_Chr5g0020651 RchiOBHm_Chr5g0027511
rosa_laevigata RLG00000002966 RLG00000019504
rosa_multiflora Rmu_co7963640.1_g000001 Rmu_co7988458.1_g000001 Rmu_co8109512.1_g000001 Rmu_co8136160.1_g000001 Rmu_co8253655.1_g000001 Rmu_sc0000388.1_g000040 Rmu_sc0000540.1_g000056 Rmu_sc0000574.1_g000013 Rmu_sc0000623.1_g000001 Rmu_sc0000795.1_g000005 Rmu_sc0000795.1_g000006 Rmu_sc0001063.1_g000001 Rmu_sc0002116.1_g000001 Rmu_sc0002192.1_g000012 Rmu_sc0002640.1_g000015 Rmu_sc0003337.1_g000039 Rmu_sc0004298.1_g000003 Rmu_sc0004771.1_g000001 Rmu_sc0006119.1_g000010 Rmu_sc0006633.1_g000007 Rmu_sc0007025.1_g000016 Rmu_sc0007221.1_g000002 Rmu_sc0007222.1_g000002 Rmu_sc0007806.1_g000016 Rmu_sc0008241.1_g000018 Rmu_sc0008348.1_g000001 Rmu_sc0009034.1_g000001 Rmu_sc0009955.1_g000004 Rmu_sc0018325.1_g000009 Rmu_sc0028328.1_g000002 Rmu_sc0030178.1_g000001 Rmu_sc0034381.1_g000001 Rmu_sc0041085.1_g000001 Rmu_sc0041085.1_g000002
rosa_roxburghii Rroxscaffold_3G00233230 Rroxscaffold_7G00193120 Rroxscaffold_7G00194820
rosa_rugosa Rorug01G0017000 Rorug01G0036400 Rorug01G0062600 Rorug01G0118500 Rorug02G0351500 Rorug02G0497600 Rorug03G0233200 Rorug03G0279500 Rorug03G0347600 Rorug04G0077100 Rorug04G0077200 Rorug04G0210900 Rorug05G0206900 Rorug07G0202900 Rorug07G0334000
rosa_samantha Rh2CG195700 Rh4DG035800
rosa_wichuraiana Rw0G005080 Rw0G013600 Rw2G020080 Rw2G024380 Rw5G002230 Rw5G036790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 40
AccB7I CCANNNNNTGG 1 cut(s) 81
AciI CCGC 3 cut(s) 119, 128, 208
AclWI GGATC 1 cut(s) 266
AcsI RAATTY 2 cut(s) 166, 324
AcyI GRCGYC 1 cut(s) 37
AfiI CCNNNNNNNGG 1 cut(s) 81
AjiI CACGTC 1 cut(s) 200
AjnI CCWGG 2 cut(s) 154, 397
AluBI AGCT 4 cut(s) 186, 314, 389, 431
AluI AGCT 4 cut(s) 186, 314, 389, 431
Alw21I GWGCWC 1 cut(s) 364
AlwI GGATC 1 cut(s) 266
ApeKI GCWGC 3 cut(s) 122, 125, 428
ApoI RAATTY 2 cut(s) 166, 324
AspS9I GGNCC 1 cut(s) 72
AsuHPI GGTGA 3 cut(s) 170, 260, 281
AvaII GGWCC 1 cut(s) 72
Bbv12I GWGCWC 1 cut(s) 364
BbvI GCAGC 3 cut(s) 109, 112, 440
BciT130I CCWGG 2 cut(s) 156, 399
BfaI CTAG 3 cut(s) 183, 315, 357
BisI GCNGC 4 cut(s) 120, 123, 126, 429
BlsI GCNGC 4 cut(s) 121, 124, 127, 430
Bme1390I CCNGG 2 cut(s) 156, 399
Bme18I GGWCC 1 cut(s) 72
BmgBI CACGTC 1 cut(s) 200
BmgT120I GGNCC 1 cut(s) 72
BmrFI CCNGG 2 cut(s) 156, 399
BpmI CTGGAG 1 cut(s) 138
BpuEI CTTGAG 2 cut(s) 121, 375
BsaHI GRCGYC 1 cut(s) 37
BsaJI CCNNGG 3 cut(s) 80, 244, 398
Bsc4I CCNNNNNNNGG 1 cut(s) 81
Bse3DI GCAATG 1 cut(s) 55
BseBI CCWGG 2 cut(s) 156, 399
BseDI CCNNGG 3 cut(s) 80, 244, 398
BseGI GGATG 1 cut(s) 340
BseLI CCNNNNNNNGG 1 cut(s) 81
BseMI GCAATG 1 cut(s) 55
BseXI GCAGC 3 cut(s) 109, 112, 440
BsiHKAI GWGCWC 1 cut(s) 364
BslFI GGGAC 1 cut(s) 219
BslI CCNNNNNNNGG 1 cut(s) 81
BsmFI GGGAC 1 cut(s) 219
BsmI GAATGC 1 cut(s) 30
Bsp1286I GDGCHC 1 cut(s) 364
Bsp143I GATC 2 cut(s) 250, 258
Bsp19I CCATGG 2 cut(s) 80, 244
BspACI CCGC 3 cut(s) 119, 128, 208
BspPI GGATC 1 cut(s) 266
BsrDI GCAATG 1 cut(s) 55
BssECI CCNNGG 3 cut(s) 80, 244, 398
BssMI GATC 2 cut(s) 250, 258
BssNI GRCGYC 1 cut(s) 37
BssT1I CCWWGG 2 cut(s) 80, 244
Bst2UI CCWGG 2 cut(s) 156, 399
Bst4CI ACNGT 2 cut(s) 177, 381
BstACI GRCGYC 1 cut(s) 37
BstC8I GCNNGC 2 cut(s) 28, 188
BstDEI CTNAG 2 cut(s) 230, 461
BstDSI CCRYGG 2 cut(s) 80, 244
BstF5I GGATG 1 cut(s) 340
BstKTI GATC 2 cut(s) 253, 261
BstMBI GATC 2 cut(s) 250, 258
BstMWI GCNNNNNNNGC 3 cut(s) 125, 134, 425
BstNI CCWGG 2 cut(s) 156, 399
BstSCI CCNGG 2 cut(s) 154, 397
BstV1I GCAGC 3 cut(s) 109, 112, 440
BstX2I RGATCY 1 cut(s) 258
BstXI CCANNNNNNTGG 2 cut(s) 162, 245
BstYI RGATCY 1 cut(s) 258
BtgI CCRYGG 2 cut(s) 80, 244
BtrI CACGTC 1 cut(s) 200
BtsCI GGATG 1 cut(s) 340
BtsIMutI CAGTG 1 cut(s) 173
Cac8I GCNNGC 2 cut(s) 28, 188
Cfr13I GGNCC 1 cut(s) 72
CviAII CATG 3 cut(s) 41, 81, 245
CviJI RGCY 9 cut(s) 85, 122, 137, 186, 243, 314, 389, 431, 460
CviKI_1 RGCY 9 cut(s) 85, 122, 137, 186, 243, 314, 389, 431, 460
DdeI CTNAG 2 cut(s) 230, 461
DpnI GATC 2 cut(s) 252, 260
DpnII GATC 2 cut(s) 250, 258
Eco130I CCWWGG 2 cut(s) 80, 244
Eco47I GGWCC 1 cut(s) 72
EcoRII CCWGG 2 cut(s) 154, 397
EcoT14I CCWWGG 2 cut(s) 80, 244
ErhI CCWWGG 2 cut(s) 80, 244
FaeI CATG 3 cut(s) 44, 84, 248
FaiI YATR 7 cut(s) 42, 82, 246, 304, 309, 311, 370
FaqI GGGAC 1 cut(s) 219
FatI CATG 3 cut(s) 40, 80, 244
Fnu4HI GCNGC 4 cut(s) 120, 123, 126, 429
FokI GGATG 1 cut(s) 347
Fsp4HI GCNGC 4 cut(s) 120, 123, 126, 429
FspBI CTAG 3 cut(s) 183, 315, 357
GluI GCNGC 4 cut(s) 120, 123, 126, 429
GsuI CTGGAG 1 cut(s) 138
Hin1I GRCGYC 1 cut(s) 37
Hin1II CATG 3 cut(s) 44, 84, 248
HinfI GANTC 1 cut(s) 338
HphI GGTGA 3 cut(s) 170, 260, 281
Hpy99I CGWCG 1 cut(s) 39
HpyAV CCTTC 1 cut(s) 271
HpyCH4III ACNGT 2 cut(s) 177, 381
HpyCH4IV ACGT 2 cut(s) 37, 199
HpyCH4V TGCA 2 cut(s) 4, 302
HpyF10VI GCNNNNNNNGC 3 cut(s) 125, 134, 425
HpyF3I CTNAG 2 cut(s) 230, 461
HpySE526I ACGT 2 cut(s) 37, 199
Hsp92I GRCGYC 1 cut(s) 37
Hsp92II CATG 3 cut(s) 44, 84, 248
Kzo9I GATC 2 cut(s) 250, 258
LpnPI CCDG 8 cut(s) 12, 55, 141, 155, 168, 247, 384, 411
Lsp1109I GCAGC 3 cut(s) 109, 112, 440
MaeI CTAG 3 cut(s) 183, 315, 357
MaeII ACGT 2 cut(s) 37, 199
MaeIII GTNAC 2 cut(s) 222, 269
MalI GATC 2 cut(s) 252, 260
MboI GATC 2 cut(s) 250, 258
MboII GAAGA 2 cut(s) 11, 434
MflI RGATCY 1 cut(s) 258
MhlI GDGCHC 1 cut(s) 364
MluCI AATT 2 cut(s) 166, 324
MmeI TCCRAC 1 cut(s) 99
MnlI CCTC 4 cut(s) 204, 237, 325, 464
MseI TTAA 1 cut(s) 56
MslI CAYNNNNRTG 1 cut(s) 243
MspR9I CCNGG 2 cut(s) 156, 399
Mva1269I GAATGC 1 cut(s) 30
MvaI CCWGG 2 cut(s) 156, 399
MwoI GCNNNNNNNGC 3 cut(s) 125, 134, 425
NcoI CCATGG 2 cut(s) 80, 244
NdeII GATC 2 cut(s) 250, 258
NlaIII CATG 3 cut(s) 44, 84, 248
NmuCI GTSAC 1 cut(s) 269
PctI GAATGC 1 cut(s) 30
PfeI GAWTC 1 cut(s) 338
PflMI CCANNNNNTGG 1 cut(s) 81
PkrI GCNGC 4 cut(s) 121, 124, 127, 430
Psp6I CCWGG 2 cut(s) 154, 397
PspGI CCWGG 2 cut(s) 154, 397
PspPI GGNCC 1 cut(s) 72
PsuI RGATCY 1 cut(s) 258
RseI CAYNNNNRTG 1 cut(s) 243
SaqAI TTAA 1 cut(s) 56
SatI GCNGC 4 cut(s) 120, 123, 126, 429
Sau3AI GATC 2 cut(s) 250, 258
Sau96I GGNCC 1 cut(s) 72
ScrFI CCNGG 2 cut(s) 156, 399
SduI GDGCHC 1 cut(s) 364
SinI GGWCC 1 cut(s) 72
SmiMI CAYNNNNRTG 1 cut(s) 243
SmlI CTYRAG 2 cut(s) 100, 390
SmoI CTYRAG 2 cut(s) 100, 390
Sse9I AATT 2 cut(s) 166, 324
SsiI CCGC 3 cut(s) 119, 128, 208
SspI AATATT 1 cut(s) 439
SspMI CTAG 3 cut(s) 183, 315, 357
StyD4I CCNGG 2 cut(s) 154, 397
StyI CCWWGG 2 cut(s) 80, 244
TaaI ACNGT 2 cut(s) 177, 381
TaiI ACGT 2 cut(s) 40, 202
TaqI TCGA 1 cut(s) 34
TaqII GACCGA 1 cut(s) 102
TasI AATT 2 cut(s) 166, 324
TauI GCSGC 1 cut(s) 122
TfiI GAWTC 1 cut(s) 338
Tru1I TTAA 1 cut(s) 56
Tru9I TTAA 1 cut(s) 56
TscAI CASTG 1 cut(s) 180
TseFI GTSAC 1 cut(s) 269
TseI GCWGC 3 cut(s) 122, 125, 428
Tsp45I GTSAC 1 cut(s) 269
TspDTI ATGAA 1 cut(s) 308
TspRI CASTG 1 cut(s) 180
Van91I CCANNNNNTGG 1 cut(s) 81
VpaK11BI GGWCC 1 cut(s) 72
XapI RAATTY 2 cut(s) 166, 324
XspI CTAG 3 cut(s) 183, 315, 357
ZraI GACGTC 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.