Rmu_sc0028328.1_g000002

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0028328.1
OG0000591
Physical Location & Seq
Reverse (-)
867 .. 1256
390 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0028328.1_g000002.1.cds

Sequence Viewer

Length: 390 bp
atggttaaatcagcctaccatgtagcttggagtaggattctcactgatgatccttccccacataaccctagtgcttctctttggcgtcggttgtggaacgctccagtttcaggtagcgtcaagatatgtgcatggaaagcagtctctaatgttcttcctactcagagtaggcttagtgaacgtggtattgacttggatacccaatgcccattctgcgttgaagaagttgagacttgtattcatgcggtccgcgattgtccccatgctactagcttgattcaaggggccaatcttcctttagtttcgaaccccacaaatgttgcagattggctttcgtctgtccctctaacaacccctcagacctttgcctctactctgatgattctctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

129

Amino Acids

14.14

Weight (kDa)

6.38

Isoelectric Point (pI)

50.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03566
fragaria_vesca FvH4_2g12622 FvH4_2g12642 FvH4_2g13902 FvH4_3g05011 FvH4_3g18961 FvH4_3g31940 FvH4_4g08421 FvH4_4g21351 FvH4_5g28071 FvH4_5g34871 FvH4_6g21812 FvH4_6g30441 FvH4_6g33631
rosa_chinensis RchiOBHm_Chr1g0320221 RchiOBHm_Chr1g0356521 RchiOBHm_Chr4g0389021 RchiOBHm_Chr5g0020651 RchiOBHm_Chr5g0027511
rosa_laevigata RLG00000002966 RLG00000019504
rosa_multiflora Rmu_co7963640.1_g000001 Rmu_co7988458.1_g000001 Rmu_co8109512.1_g000001 Rmu_co8136160.1_g000001 Rmu_co8253655.1_g000001 Rmu_sc0000388.1_g000040 Rmu_sc0000540.1_g000056 Rmu_sc0000574.1_g000013 Rmu_sc0000623.1_g000001 Rmu_sc0000795.1_g000005 Rmu_sc0000795.1_g000006 Rmu_sc0001063.1_g000001 Rmu_sc0002116.1_g000001 Rmu_sc0002192.1_g000012 Rmu_sc0002640.1_g000015 Rmu_sc0003337.1_g000039 Rmu_sc0004298.1_g000003 Rmu_sc0004771.1_g000001 Rmu_sc0006119.1_g000010 Rmu_sc0006633.1_g000007 Rmu_sc0007025.1_g000016 Rmu_sc0007221.1_g000002 Rmu_sc0007222.1_g000002 Rmu_sc0007806.1_g000016 Rmu_sc0008241.1_g000018 Rmu_sc0008348.1_g000001 Rmu_sc0009034.1_g000001 Rmu_sc0009955.1_g000004 Rmu_sc0018325.1_g000009 Rmu_sc0028328.1_g000002 Rmu_sc0030178.1_g000001 Rmu_sc0034381.1_g000001 Rmu_sc0041085.1_g000001 Rmu_sc0041085.1_g000002
rosa_roxburghii Rroxscaffold_3G00233230 Rroxscaffold_7G00193120 Rroxscaffold_7G00194820
rosa_rugosa Rorug01G0017000 Rorug01G0036400 Rorug01G0062600 Rorug01G0118500 Rorug02G0351500 Rorug02G0497600 Rorug03G0233200 Rorug03G0279500 Rorug03G0347600 Rorug04G0077100 Rorug04G0077200 Rorug04G0210900 Rorug05G0206900 Rorug07G0202900 Rorug07G0334000
rosa_samantha Rh2CG195700 Rh4DG035800
rosa_wichuraiana Rw0G005080 Rw0G013600 Rw2G020080 Rw2G024380 Rw5G002230 Rw5G036790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 252
AciI CCGC 2 cut(s) 245, 250
AclWI GGATC 1 cut(s) 44
AcyI GRCGYC 1 cut(s) 85
AfiI CCNNNNNNNGG 1 cut(s) 110
AgsI TTSAA 2 cut(s) 221, 281
AluBI AGCT 2 cut(s) 26, 273
AluI AGCT 2 cut(s) 26, 273
Alw26I GTCTC 2 cut(s) 148, 224
AlwI GGATC 1 cut(s) 44
AoxI GGCC 1 cut(s) 285
AspS9I GGNCC 2 cut(s) 247, 285
AsuII TTCGAA 1 cut(s) 305
AvaII GGWCC 1 cut(s) 247
BciVI GTATCC 1 cut(s) 190
BcoDI GTCTC 2 cut(s) 148, 224
BfaI CTAG 3 cut(s) 69, 270, 388
BfuI GTATCC 1 cut(s) 190
Bme18I GGWCC 1 cut(s) 247
BmgT120I GGNCC 2 cut(s) 247, 285
BmiI GGNNCC 1 cut(s) 286
BpmI CTGGAG 1 cut(s) 87
Bpu14I TTCGAA 1 cut(s) 305
BsaHI GRCGYC 1 cut(s) 85
Bsc4I CCNNNNNNNGG 1 cut(s) 110
Bse1I ACTGG 1 cut(s) 104
BseLI CCNNNNNNNGG 1 cut(s) 110
BseMII CTCAG 2 cut(s) 176, 371
BseNI ACTGG 1 cut(s) 104
Bsh1236I CGCG 1 cut(s) 252
BshFI GGCC 1 cut(s) 287
BslFI GGGAC 2 cut(s) 243, 326
BslI CCNNNNNNNGG 1 cut(s) 110
BsmAI GTCTC 2 cut(s) 148, 224
BsmFI GGGAC 2 cut(s) 243, 326
BsnI GGCC 1 cut(s) 287
Bsp119I TTCGAA 1 cut(s) 305
Bsp143I GATC 1 cut(s) 49
BspACI CCGC 2 cut(s) 245, 250
BspANI GGCC 1 cut(s) 287
BspCNI CTCAG 2 cut(s) 175, 370
BspFNI CGCG 1 cut(s) 252
BspLI GGNNCC 1 cut(s) 286
BspPI GGATC 1 cut(s) 44
BspT104I TTCGAA 1 cut(s) 305
BsrI ACTGG 1 cut(s) 104
BssMI GATC 1 cut(s) 49
BssNI GRCGYC 1 cut(s) 85
BstACI GRCGYC 1 cut(s) 85
BstBI TTCGAA 1 cut(s) 305
BstDEI CTNAG 3 cut(s) 162, 173, 357
BstFNI CGCG 1 cut(s) 252
BstKTI GATC 1 cut(s) 52
BstMAI GTCTC 2 cut(s) 148, 224
BstMBI GATC 1 cut(s) 49
BstMWI GCNNNNNNNGC 2 cut(s) 137, 213
BstUI CGCG 1 cut(s) 252
BsuI GTATCC 1 cut(s) 190
BsuRI GGCC 1 cut(s) 287
BtsIMutI CAGTG 1 cut(s) 42
Cfr13I GGNCC 2 cut(s) 247, 285
CpoI CGGWCCG 1 cut(s) 247
CseI GACGC 2 cut(s) 74, 106
CspCI CAANNNNNGTGG 2 cut(s) 301, 336
CspI CGGWCCG 1 cut(s) 247
CviAII CATG 4 cut(s) 20, 132, 242, 263
CviJI RGCY 6 cut(s) 14, 26, 172, 273, 287, 331
CviKI_1 RGCY 6 cut(s) 14, 26, 172, 273, 287, 331
DdeI CTNAG 3 cut(s) 162, 173, 357
DpnI GATC 1 cut(s) 51
DpnII GATC 1 cut(s) 49
Eco47I GGWCC 1 cut(s) 247
FaeI CATG 4 cut(s) 23, 135, 245, 266
FaiI YATR 6 cut(s) 21, 63, 127, 133, 243, 264
FaqI GGGAC 2 cut(s) 243, 326
FatI CATG 4 cut(s) 19, 131, 241, 262
FspBI CTAG 3 cut(s) 69, 270, 388
GsuI CTGGAG 1 cut(s) 87
HaeIII GGCC 1 cut(s) 287
HgaI GACGC 2 cut(s) 74, 106
Hin1I GRCGYC 1 cut(s) 85
Hin1II CATG 4 cut(s) 23, 135, 245, 266
HinfI GANTC 3 cut(s) 37, 277, 382
Hpy166II GTNNAC 1 cut(s) 179
Hpy188I TCNGA 3 cut(s) 165, 360, 378
Hpy188III TCNNGA 1 cut(s) 121
Hpy8I GTNNAC 1 cut(s) 179
Hpy99I CGWCG 1 cut(s) 90
HpyAV CCTTC 1 cut(s) 63
HpyCH4IV ACGT 1 cut(s) 181
HpyCH4V TGCA 2 cut(s) 131, 323
HpyF10VI GCNNNNNNNGC 2 cut(s) 137, 213
HpyF3I CTNAG 3 cut(s) 162, 173, 357
HpySE526I ACGT 1 cut(s) 181
Hsp92I GRCGYC 1 cut(s) 85
Hsp92II CATG 4 cut(s) 23, 135, 245, 266
Kzo9I GATC 1 cut(s) 49
LmnI GCTCC 1 cut(s) 106
LpnPI CCDG 2 cut(s) 96, 117
MaeI CTAG 3 cut(s) 69, 270, 388
MaeII ACGT 1 cut(s) 181
MalI GATC 1 cut(s) 51
MboI GATC 1 cut(s) 49
MboII GAAGA 3 cut(s) 146, 233, 284
MnlI CCTC 3 cut(s) 354, 366, 379
MseI TTAA 1 cut(s) 6
MvnI CGCG 1 cut(s) 252
MwoI GCNNNNNNNGC 2 cut(s) 137, 213
NdeII GATC 1 cut(s) 49
NlaIII CATG 4 cut(s) 23, 135, 245, 266
NlaIV GGNNCC 1 cut(s) 286
NspV TTCGAA 1 cut(s) 305
PfeI GAWTC 3 cut(s) 37, 277, 382
PspN4I GGNNCC 1 cut(s) 286
PspPI GGNCC 2 cut(s) 247, 285
Rsr2I CGGWCCG 1 cut(s) 247
RsrII CGGWCCG 1 cut(s) 247
SaqAI TTAA 1 cut(s) 6
Sau3AI GATC 1 cut(s) 49
Sau96I GGNCC 2 cut(s) 247, 285
SetI ASST 5 cut(s) 28, 115, 184, 275, 365
SfuI TTCGAA 1 cut(s) 305
SinI GGWCC 1 cut(s) 247
SsiI CCGC 2 cut(s) 245, 250
SspMI CTAG 3 cut(s) 69, 270, 388
TaiI ACGT 1 cut(s) 184
TaqI TCGA 1 cut(s) 305
TfiI GAWTC 3 cut(s) 37, 277, 382
Tru1I TTAA 1 cut(s) 6
Tru9I TTAA 1 cut(s) 6
TscAI CASTG 1 cut(s) 49
TspDTI ATGAA 1 cut(s) 230
TspRI CASTG 1 cut(s) 49
VpaK11BI GGWCC 1 cut(s) 247
XspI CTAG 3 cut(s) 69, 270, 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.