Rw5G036790

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000591
Physical Location & Seq
Reverse (-)
64594416 .. 64596816
2401 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G036790.1

Sequence Viewer

Length: 1524 bp
ATGTCTCCCTTCTTTTTCCAGAAGTACTGGGATCTTGTGGGGTCAGAGGTTAGTAGAGCAGTGATTTCTTTGTTGACAACTAAGGATATGCCTTCGGATTTGAACTTTACTCATGTGGTTTTGATTCCAAAGGTGAAAGAAGTACAAAATATGTCACAACTACGACCTATTTCTTTATGCAATGTCCTTTACGAAATAGCTTCAAAGGTGGTGGCTAATAGATTGAAAGTGTTATTACCTACCATTATCTCCCCACAGCAGAGTGCGTTTGTCCCAGATAGGTTAATCTCTGACAACACTTTAGTGGCATCTGAATTTACTCATTATATGAATAAGTTGAGAAGAGACCAGGAGGGATTTTTGGCTCTCAAATTGGATATTACTAAAGCCTACGACCGATTGTCAACCCTTATTTCTCACTTTGTGGCTAACGGTCAGTGGCAAGGGCTGCGGGATTGCATTTTGATTCGGAATATATTAAATGTCCATGAGAGAGCTTCGGGGCAAAAGATTAAACTGCAAAAGGGTAGTGTGGTATTTAGTGGGACTAAACAAGGATGGCGTCTAATTCAAGATCCTGAGTCTTTGGTTGGTAGGCTGTTGAAGGCAATCTATTTTCCCCATTGTAATTTTTGGGACGCGGAGGTTGGTTCAGCTCCATCCTATGCTTGGCGTAGCATTCTGAATGGTAGAGATATTCTGCAGGCCGGTATTCGGCATCATATTGGGGATGGTAAGTCCACCAACGTGTGGACTGATCCTTGGTTGATTGGGGATGATTTCACTTCTTTCTACACTCCTAGAATTAATATGGTTTCAGACCCTATTTTATCTCCAGGTGTTTGGAACCAGGCTTTACTACATGAGCTCTTCCCATTACATATTACACAAAAGATCTTGGCTCTCCCGCTTAGTAATCGTATGTATGATGATCGGTGGATTTGGTCTGGTGATAAGAAGGGAGGCTTCACCGTCAAATCCGCCTACCATATAGCACAGGATAGAGTTTTGGGTGAGAAATCCAGCATGCCTAACCCTAGTGCCGAGCTTTGGAACCGGATTTGGCAAGCCCCCGGTCCCAGGGAAGGTTTAAATTTGGGTATAGTCATTGATACCCAATGCCCATTCTGCGACGAAGAAATTGAGTACCCTCTACATGCATTAAGAGATTGCTCCCACGCAAGCTCATTTCTTCAATTGGCAAATATTCCCACTGTTCCCTTTTCTACAAGTTTAGCTTCGGAAGTTGTGCCACTTACTCTAGGATGGTGGGAGGAATTTAAGGTTGCTCATTCATCTTCTCGTCTTGCATCTCCAATACAAAATGTTAGATGGAAGAAGCCTCCTATAGGTATGATCAAACTAAACGTGGATGTGGCTTTTAGCAATGTGGATGGGAGTGTAGGTGTTAGGGGTGTGTTTCGAGACTTTGAAGGCTCTTGTCTGGGAGGTTTTCGCCACACACTTCCTACAGCTTCTTCCGCTCAGCATGCAGAACTGGTAGCGCTGCTAGTGGGGGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

507

Amino Acids

56.86

Weight (kDa)

8.56

Isoelectric Point (pI)

47.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 43 - 187 1.6e-09 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03566
fragaria_vesca FvH4_2g12622 FvH4_2g12642 FvH4_2g13902 FvH4_3g05011 FvH4_3g18961 FvH4_3g31940 FvH4_4g08421 FvH4_4g21351 FvH4_5g28071 FvH4_5g34871 FvH4_6g21812 FvH4_6g30441 FvH4_6g33631
rosa_chinensis RchiOBHm_Chr1g0320221 RchiOBHm_Chr1g0356521 RchiOBHm_Chr4g0389021 RchiOBHm_Chr5g0020651 RchiOBHm_Chr5g0027511
rosa_laevigata RLG00000002966 RLG00000019504
rosa_multiflora Rmu_co7963640.1_g000001 Rmu_co7988458.1_g000001 Rmu_co8109512.1_g000001 Rmu_co8136160.1_g000001 Rmu_co8253655.1_g000001 Rmu_sc0000388.1_g000040 Rmu_sc0000540.1_g000056 Rmu_sc0000574.1_g000013 Rmu_sc0000623.1_g000001 Rmu_sc0000795.1_g000005 Rmu_sc0000795.1_g000006 Rmu_sc0001063.1_g000001 Rmu_sc0002116.1_g000001 Rmu_sc0002192.1_g000012 Rmu_sc0002640.1_g000015 Rmu_sc0003337.1_g000039 Rmu_sc0004298.1_g000003 Rmu_sc0004771.1_g000001 Rmu_sc0006119.1_g000010 Rmu_sc0006633.1_g000007 Rmu_sc0007025.1_g000016 Rmu_sc0007221.1_g000002 Rmu_sc0007222.1_g000002 Rmu_sc0007806.1_g000016 Rmu_sc0008241.1_g000018 Rmu_sc0008348.1_g000001 Rmu_sc0009034.1_g000001 Rmu_sc0009955.1_g000004 Rmu_sc0018325.1_g000009 Rmu_sc0028328.1_g000002 Rmu_sc0030178.1_g000001 Rmu_sc0034381.1_g000001 Rmu_sc0041085.1_g000001 Rmu_sc0041085.1_g000002
rosa_roxburghii Rroxscaffold_3G00233230 Rroxscaffold_7G00193120 Rroxscaffold_7G00194820
rosa_rugosa Rorug01G0017000 Rorug01G0036400 Rorug01G0062600 Rorug01G0118500 Rorug02G0351500 Rorug02G0497600 Rorug03G0233200 Rorug03G0279500 Rorug03G0347600 Rorug04G0077100 Rorug04G0077200 Rorug04G0210900 Rorug05G0206900 Rorug07G0202900 Rorug07G0334000
rosa_samantha Rh2CG195700 Rh4DG035800
rosa_wichuraiana Rw0G005080 Rw0G013600 Rw2G020080 Rw2G024380 Rw5G002230 Rw5G036790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 750
AccBSI CCGCTC 1 cut(s) 1484
AccII CGCG 1 cut(s) 641
AciI CCGC 5 cut(s) 451, 641, 908, 981, 1482
AclWI GGATC 3 cut(s) 39, 569, 752
AcsI RAATTY 3 cut(s) 314, 1093, 1277
AcyI GRCGYC 1 cut(s) 562
AdeI CACNNNGTG 1 cut(s) 424
AfaI GTAC 3 cut(s) 26, 144, 1148
AfeI AGCGCT 1 cut(s) 1506
AfiI CCNNNNNNNGG 7 cut(s) 669, 714, 750, 1050, 1080, 1085, 1349
AflIII ACRYGT 1 cut(s) 747
AgsI TTSAA 7 cut(s) 103, 204, 226, 572, 604, 1196, 1433
AhdI GACNNNNNGTC 1 cut(s) 400
AjnI CCWGG 4 cut(s) 348, 835, 849, 1079
AleI CACNNNNGTG 2 cut(s) 302, 746
AluBI AGCT 8 cut(s) 200, 497, 656, 868, 1048, 1185, 1238, 1475
AluI AGCT 8 cut(s) 200, 497, 656, 868, 1048, 1185, 1238, 1475
Alw21I GWGCWC 1 cut(s) 870
Alw26I GTCTC 3 cut(s) 9, 339, 1419
AlwI GGATC 3 cut(s) 39, 569, 752
Aor51HI AGCGCT 1 cut(s) 1506
AoxI GGCC 1 cut(s) 705
ApeKI GCWGC 2 cut(s) 448, 1507
ApoI RAATTY 3 cut(s) 314, 1093, 1277
AseI ATTAAT 1 cut(s) 807
AspLEI GCGC 1 cut(s) 1507
AspS9I GGNCC 1 cut(s) 1076
AsuC2I CCSGG 1 cut(s) 1074
AsuHPI GGTGA 4 cut(s) 145, 961, 962, 1025
AvaII GGWCC 1 cut(s) 1076
BanII GRGCYC 1 cut(s) 870
Bbv12I GWGCWC 1 cut(s) 870
BbvI GCAGC 2 cut(s) 435, 1494
BccI CCATC 6 cut(s) 552, 667, 725, 1260, 1326, 1388
BciT130I CCWGG 4 cut(s) 350, 837, 851, 1081
BclI TGATCA 1 cut(s) 1356
BcnI CCSGG 1 cut(s) 1074
BcoDI GTCTC 3 cut(s) 9, 339, 1419
BfaI CTAG 5 cut(s) 801, 1038, 1262, 1511, 1522
BfmI CTRYAG 3 cut(s) 701, 1347, 1470
BfoI RGCGCY 1 cut(s) 1508
BglII AGATCT 1 cut(s) 894
BisI GCNGC 2 cut(s) 449, 1508
BlpI GCTNAGC 1 cut(s) 1485
BlsI GCNGC 2 cut(s) 450, 1509
BmcAI AGTACT 1 cut(s) 26
Bme1390I CCNGG 5 cut(s) 350, 837, 851, 1074, 1081
Bme18I GGWCC 1 cut(s) 1076
BmeRI GACNNNNNGTC 1 cut(s) 400
BmgT120I GGNCC 1 cut(s) 1076
BmiI GGNNCC 3 cut(s) 848, 1055, 1078
BmrFI CCNGG 5 cut(s) 350, 837, 851, 1074, 1081
BmrI ACTGGG 1 cut(s) 37
BmsI GCATC 3 cut(s) 317, 727, 1319
BmuI ACTGGG 1 cut(s) 37
BpmI CTGGAG 1 cut(s) 819
Bpu1102I GCTNAGC 1 cut(s) 1485
BpuMI CCSGG 1 cut(s) 1074
BsaHI GRCGYC 1 cut(s) 562
BsaI GGTCTC 1 cut(s) 339
BsaJI CCNNGG 4 cut(s) 761, 1072, 1079, 1080
BsaWI WCCGGW 1 cut(s) 1056
BsaXI ACNNNNNCTCC 2 cut(s) 1390, 1420
Bsc4I CCNNNNNNNGG 7 cut(s) 669, 714, 750, 1050, 1080, 1085, 1349
Bse118I RCCGGY 1 cut(s) 707
Bse1I ACTGG 2 cut(s) 32, 1503
Bse3DI GCAATG 2 cut(s) 187, 1393
BseBI CCWGG 4 cut(s) 350, 837, 851, 1081
BseDI CCNNGG 4 cut(s) 761, 1072, 1079, 1080
BseGI GGATG 7 cut(s) 563, 659, 736, 781, 1271, 1378, 1399
BseLI CCNNNNNNNGG 7 cut(s) 669, 714, 750, 1050, 1080, 1085, 1349
BseMI GCAATG 2 cut(s) 187, 1393
BseMII CTCAG 2 cut(s) 570, 1499
BseNI ACTGG 2 cut(s) 32, 1503
BseXI GCAGC 2 cut(s) 435, 1494
Bsh1236I CGCG 1 cut(s) 641
Bsh1285I CGRYCG 1 cut(s) 397
BshFI GGCC 1 cut(s) 707
BsiEI CGRYCG 1 cut(s) 397
BsiHKAI GWGCWC 1 cut(s) 870
BsiSI CCGG 3 cut(s) 708, 1057, 1074
BslFI GGGAC 4 cut(s) 257, 559, 650, 1062
BslI CCNNNNNNNGG 7 cut(s) 669, 714, 750, 1050, 1080, 1085, 1349
BsmAI GTCTC 3 cut(s) 9, 339, 1419
BsmFI GGGAC 4 cut(s) 257, 559, 650, 1062
BsmI GAATGC 1 cut(s) 678
BsnI GGCC 1 cut(s) 707
Bso31I GGTCTC 1 cut(s) 339
Bsp1286I GDGCHC 1 cut(s) 870
Bsp143I GATC 6 cut(s) 31, 574, 757, 894, 931, 1356
Bsp1720I GCTNAGC 1 cut(s) 1485
BspACI CCGC 5 cut(s) 451, 641, 908, 981, 1482
BspANI GGCC 1 cut(s) 707
BspCNI CTCAG 2 cut(s) 571, 1498
BspFNI CGCG 1 cut(s) 641
BspLI GGNNCC 3 cut(s) 848, 1055, 1078
BspMAI CTGCAG 1 cut(s) 705
BspPI GGATC 3 cut(s) 39, 569, 752
BspQI GCTCTTC 1 cut(s) 875
BspTNI GGTCTC 1 cut(s) 339
BsrBI CCGCTC 1 cut(s) 1484
BsrDI GCAATG 2 cut(s) 187, 1393
BsrFI RCCGGY 1 cut(s) 707
BsrI ACTGG 2 cut(s) 32, 1503
BssAI RCCGGY 1 cut(s) 707
BssECI CCNNGG 4 cut(s) 761, 1072, 1079, 1080
BssMI GATC 6 cut(s) 31, 574, 757, 894, 931, 1356
BssNI GRCGYC 1 cut(s) 562
BssT1I CCWWGG 1 cut(s) 761
Bst2UI CCWGG 4 cut(s) 350, 837, 851, 1081
Bst4CI ACNGT 3 cut(s) 434, 973, 1216
Bst6I CTCTTC 2 cut(s) 337, 875
BstACI GRCGYC 1 cut(s) 562
BstAPI GCANNNNNTGC 1 cut(s) 448
BstC8I GCNNGC 5 cut(s) 705, 1028, 1068, 1183, 1491
BstDEI CTNAG 4 cut(s) 81, 579, 911, 1485
BstENI CCTNNNNNAGG 1 cut(s) 1347
BstF5I GGATG 7 cut(s) 563, 659, 736, 781, 1271, 1378, 1399
BstFNI CGCG 1 cut(s) 641
BstH2I RGCGCY 1 cut(s) 1508
BstHHI GCGC 1 cut(s) 1507
BstKTI GATC 6 cut(s) 34, 577, 760, 897, 934, 1359
BstMAI GTCTC 3 cut(s) 9, 339, 1419
BstMBI GATC 6 cut(s) 31, 574, 757, 894, 931, 1356
BstMCI CGRYCG 1 cut(s) 397
BstMWI GCNNNNNNNGC 4 cut(s) 448, 1128, 1481, 1490
BstNI CCWGG 4 cut(s) 350, 837, 851, 1081
BstNSI RCATGY 3 cut(s) 1030, 1160, 1493
BstSCI CCNGG 5 cut(s) 348, 835, 849, 1072, 1079
BstSFI CTRYAG 3 cut(s) 701, 1347, 1470
BstUI CGCG 1 cut(s) 641
BstV1I GCAGC 2 cut(s) 435, 1494
BstX2I RGATCY 3 cut(s) 31, 574, 894
BstXI CCANNNNNNTGG 1 cut(s) 843
BstYI RGATCY 3 cut(s) 31, 574, 894
BsuRI GGCC 1 cut(s) 707
BtsCI GGATG 7 cut(s) 563, 659, 736, 781, 1271, 1378, 1399
BtsI GCAGTG 1 cut(s) 66
BtsIMutI CAGTG 3 cut(s) 66, 443, 1212
Cac8I GCNNGC 5 cut(s) 705, 1028, 1068, 1183, 1491
CfoI GCGC 1 cut(s) 1507
Cfr10I RCCGGY 1 cut(s) 707
Cfr13I GGNCC 1 cut(s) 1076
CseI GACGC 2 cut(s) 551, 647
Csp6I GTAC 3 cut(s) 25, 143, 1147
CspCI CAANNNNNGTGG 2 cut(s) 192, 227
CviAII CATG 6 cut(s) 113, 488, 863, 1027, 1157, 1490
CviQI GTAC 3 cut(s) 25, 143, 1147
DdeI CTNAG 4 cut(s) 81, 579, 911, 1485
DpnI GATC 6 cut(s) 33, 576, 759, 896, 933, 1358
DpnII GATC 6 cut(s) 31, 574, 757, 894, 931, 1356
DraI TTTAAA 1 cut(s) 1092
DraIII CACNNNGTG 1 cut(s) 424
DriI GACNNNNNGTC 1 cut(s) 400
Eam1104I CTCTTC 2 cut(s) 337, 875
Eam1105I GACNNNNNGTC 1 cut(s) 400
EarI CTCTTC 2 cut(s) 337, 875
EciI GGCGGA 1 cut(s) 970
Ecl136II GAGCTC 1 cut(s) 868
Eco130I CCWWGG 1 cut(s) 761
Eco24I GRGCYC 1 cut(s) 870
Eco31I GGTCTC 1 cut(s) 339
Eco47I GGWCC 1 cut(s) 1076
Eco47III AGCGCT 1 cut(s) 1506
Eco53kI GAGCTC 1 cut(s) 868
EcoICRI GAGCTC 1 cut(s) 868
EcoNI CCTNNNNNAGG 1 cut(s) 1347
EcoRII CCWGG 4 cut(s) 348, 835, 849, 1079
EcoT14I CCWWGG 1 cut(s) 761
EcoT22I ATGCAT 1 cut(s) 1162
EcoT38I GRGCYC 1 cut(s) 870
ErhI CCWWGG 1 cut(s) 761
FaeI CATG 6 cut(s) 116, 491, 866, 1030, 1160, 1493
FalI AAGNNNNNCTT 4 cut(s) 950, 982, 1222, 1254
FaqI GGGAC 4 cut(s) 257, 559, 650, 1062
FatI CATG 6 cut(s) 112, 487, 862, 1026, 1156, 1489
FauI CCCGC 2 cut(s) 444, 915
FbaI TGATCA 1 cut(s) 1356
Fnu4HI GCNGC 2 cut(s) 449, 1508
FokI GGATG 7 cut(s) 570, 646, 743, 788, 1278, 1385, 1406
FriOI GRGCYC 1 cut(s) 870
Fsp4HI GCNGC 2 cut(s) 449, 1508
FspBI CTAG 5 cut(s) 801, 1038, 1262, 1511, 1522
GlaI GCGC 1 cut(s) 1506
GluI GCNGC 2 cut(s) 449, 1508
GsuI CTGGAG 1 cut(s) 819
HaeII RGCGCY 1 cut(s) 1508
HaeIII GGCC 1 cut(s) 707
HapII CCGG 3 cut(s) 708, 1057, 1074
HgaI GACGC 2 cut(s) 551, 647
HhaI GCGC 1 cut(s) 1507
Hin1I GRCGYC 1 cut(s) 562
Hin1II CATG 6 cut(s) 116, 491, 866, 1030, 1160, 1493
Hin6I GCGC 1 cut(s) 1505
HinP1I GCGC 1 cut(s) 1505
HincII GTYRAC 2 cut(s) 75, 405
HindII GTYRAC 2 cut(s) 75, 405
HinfI GANTC 3 cut(s) 124, 466, 581
HpaII CCGG 3 cut(s) 708, 1057, 1074
HphI GGTGA 4 cut(s) 145, 961, 962, 1025
Hpy166II GTNNAC 4 cut(s) 75, 405, 741, 753
Hpy188I TCNGA 8 cut(s) 46, 97, 292, 313, 471, 684, 820, 1243
Hpy188III TCNNGA 4 cut(s) 19, 572, 578, 1424
Hpy8I GTNNAC 4 cut(s) 75, 405, 741, 753
Hpy99I CGWCG 1 cut(s) 1136
HpyAV CCTTC 6 cut(s) 19, 102, 598, 952, 1079, 1427
HpyCH4III ACNGT 3 cut(s) 434, 973, 1216
HpyCH4IV ACGT 2 cut(s) 747, 1368
HpyCH4V TGCA 7 cut(s) 180, 459, 520, 703, 1160, 1310, 1493
HpyF10VI GCNNNNNNNGC 4 cut(s) 448, 1128, 1481, 1490
HpyF3I CTNAG 4 cut(s) 81, 579, 911, 1485
HpySE526I ACGT 2 cut(s) 747, 1368
Hsp92I GRCGYC 1 cut(s) 562
Hsp92II CATG 6 cut(s) 116, 491, 866, 1030, 1160, 1493
HspAI GCGC 1 cut(s) 1505
Ksp22I TGATCA 1 cut(s) 1356
Kzo9I GATC 6 cut(s) 31, 574, 757, 894, 931, 1356
LguI GCTCTTC 1 cut(s) 875
LmnI GCTCC 2 cut(s) 661, 1178
Lsp1109I GCAGC 2 cut(s) 435, 1494
LweI GCATC 3 cut(s) 317, 727, 1319
MaeI CTAG 5 cut(s) 801, 1038, 1262, 1511, 1522
MaeII ACGT 2 cut(s) 747, 1368
MaeIII GTNAC 1 cut(s) 153
MalI GATC 6 cut(s) 33, 576, 759, 896, 933, 1358
MbiI CCGCTC 1 cut(s) 1484
MboI GATC 6 cut(s) 31, 574, 757, 894, 931, 1356
MboII GAAGA 7 cut(s) 354, 862, 1148, 1184, 1290, 1348, 1470
MfeI CAATTG 1 cut(s) 1196
MflI RGATCY 3 cut(s) 31, 574, 894
MhlI GDGCHC 1 cut(s) 870
MluCI AATT 9 cut(s) 314, 371, 567, 628, 804, 1093, 1140, 1196, 1277
MlyI GAGTC 1 cut(s) 590
MnlI CCTC 8 cut(s) 40, 346, 637, 956, 1161, 1267, 1353, 1442
Mph1103I ATGCAT 1 cut(s) 1162
MseI TTAA 7 cut(s) 284, 479, 513, 807, 1091, 1163, 1281
MslI CAYNNNNRTG 2 cut(s) 302, 746
MspI CCGG 3 cut(s) 708, 1057, 1074
MspR9I CCNGG 5 cut(s) 350, 837, 851, 1074, 1081
MunI CAATTG 1 cut(s) 1196
Mva1269I GAATGC 1 cut(s) 678
MvaI CCWGG 4 cut(s) 350, 837, 851, 1081
MvnI CGCG 1 cut(s) 641
MwoI GCNNNNNNNGC 4 cut(s) 448, 1128, 1481, 1490
NciI CCSGG 1 cut(s) 1074
NdeII GATC 6 cut(s) 31, 574, 757, 894, 931, 1356
NlaIII CATG 6 cut(s) 116, 491, 866, 1030, 1160, 1493
NlaIV GGNNCC 3 cut(s) 848, 1055, 1078
NmeAIII GCCGAG 1 cut(s) 1069
NmuCI GTSAC 1 cut(s) 153
NsiI ATGCAT 1 cut(s) 1162
NspI RCATGY 3 cut(s) 1030, 1160, 1493
OliI CACNNNNGTG 2 cut(s) 302, 746
PaeI GCATGC 2 cut(s) 1030, 1493
PasI CCCWGGG 1 cut(s) 1080
PciSI GCTCTTC 1 cut(s) 875
PctI GAATGC 1 cut(s) 678
PfeI GAWTC 2 cut(s) 124, 466
PflMI CCANNNNNTGG 1 cut(s) 750
PkrI GCNGC 2 cut(s) 450, 1509
PleI GAGTC 1 cut(s) 589
PpsI GAGTC 1 cut(s) 589
PshBI ATTAAT 1 cut(s) 807
Psp124BI GAGCTC 1 cut(s) 870
Psp6I CCWGG 4 cut(s) 348, 835, 849, 1079
PspGI CCWGG 4 cut(s) 348, 835, 849, 1079
PspN4I GGNNCC 3 cut(s) 848, 1055, 1078
PspPI GGNCC 1 cut(s) 1076
PstI CTGCAG 1 cut(s) 705
PsuI RGATCY 3 cut(s) 31, 574, 894
RsaI GTAC 3 cut(s) 26, 144, 1148
RsaNI GTAC 3 cut(s) 25, 143, 1147
RseI CAYNNNNRTG 2 cut(s) 302, 746
SacI GAGCTC 1 cut(s) 870
SapI GCTCTTC 1 cut(s) 875
SaqAI TTAA 7 cut(s) 284, 479, 513, 807, 1091, 1163, 1281
SatI GCNGC 2 cut(s) 449, 1508
Sau3AI GATC 6 cut(s) 31, 574, 757, 894, 931, 1356
Sau96I GGNCC 1 cut(s) 1076
ScaI AGTACT 1 cut(s) 26
SchI GAGTC 1 cut(s) 590
ScrFI CCNGG 5 cut(s) 350, 837, 851, 1074, 1081
SduI GDGCHC 1 cut(s) 870
SfaNI GCATC 3 cut(s) 317, 727, 1319
SfcI CTRYAG 3 cut(s) 701, 1347, 1470
SinI GGWCC 1 cut(s) 1076
SmiMI CAYNNNNRTG 2 cut(s) 302, 746
SphI GCATGC 2 cut(s) 1030, 1493
Sse9I AATT 9 cut(s) 314, 371, 567, 628, 804, 1093, 1140, 1196, 1277
SsiI CCGC 5 cut(s) 451, 641, 908, 981, 1482
SspI AATATT 1 cut(s) 1207
SspMI CTAG 5 cut(s) 801, 1038, 1262, 1511, 1522
SstI GAGCTC 1 cut(s) 870
StyD4I CCNGG 5 cut(s) 348, 835, 849, 1072, 1079
StyI CCWWGG 1 cut(s) 761
TaaI ACNGT 3 cut(s) 434, 973, 1216
TaiI ACGT 2 cut(s) 750, 1371
TaqI TCGA 1 cut(s) 1423
TaqII GACCGA 1 cut(s) 411
TasI AATT 9 cut(s) 314, 371, 567, 628, 804, 1093, 1140, 1196, 1277
TatI WGTACW 2 cut(s) 24, 142
TfiI GAWTC 2 cut(s) 124, 466
Tru1I TTAA 7 cut(s) 284, 479, 513, 807, 1091, 1163, 1281
Tru9I TTAA 7 cut(s) 284, 479, 513, 807, 1091, 1163, 1281
TscAI CASTG 3 cut(s) 66, 443, 1219
TseFI GTSAC 1 cut(s) 153
TseI GCWGC 2 cut(s) 448, 1507
Tsp45I GTSAC 1 cut(s) 153
TspDTI ATGAA 2 cut(s) 344, 1284
TspRI CASTG 3 cut(s) 66, 443, 1219
Van91I CCANNNNNTGG 1 cut(s) 750
VpaK11BI GGWCC 1 cut(s) 1076
VspI ATTAAT 1 cut(s) 807
XagI CCTNNNNNAGG 1 cut(s) 1347
XapI RAATTY 3 cut(s) 314, 1093, 1277
XceI RCATGY 3 cut(s) 1030, 1160, 1493
XcmI CCANNNNNNNNNTGG 1 cut(s) 666
XspI CTAG 5 cut(s) 801, 1038, 1262, 1511, 1522
ZrmI AGTACT 1 cut(s) 26
Zsp2I ATGCAT 1 cut(s) 1162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.