Rmu_sc0007221.1_g000002

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007221.1
OG0000591
Physical Location & Seq
Reverse (-)
2859 .. 3497
639 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007221.1_g000002.1.cds

Sequence Viewer

Length: 639 bp
atgcattggagggcttgtgatcaattatgtaaacctaaagtgatgggtggaatggaatttcgtcatctgttttcttttaatctggctatgttagctaaacaaggatggcgtctaattcaagatcctgagtctttggttggtaggctgttgaaggcaatctattttccccattgtaatttttgggacgcggaggttggttcagctccatcctatgcttggcgtagcattctgaatggtagagatattctgcacgccggtattcggcatcatattggggatggtaagtccaccaacgtgtggactgatccttggttgattggggatgatttgacttctttctacactcctagaattaatatggtttcagaccctattttatctccaggtgtttggaaccaggctttactacatgagctcttcccattacatattacacaaaagatcttggctctcccgcttagtaatcgtatgtatgatgatcggtggatttggtctggtgataagaagggaggcttcaccgtcaaatccgcctaccatatagcacaggatagagttttgggtgagaaatccagcatgcctaaccctagtggcgagctttggaaccggatttggcaagcccccggtcccagggaaggttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

212

Amino Acids

24.25

Weight (kDa)

8.79

Isoelectric Point (pI)

47.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03566
fragaria_vesca FvH4_2g12622 FvH4_2g12642 FvH4_2g13902 FvH4_3g05011 FvH4_3g18961 FvH4_3g31940 FvH4_4g08421 FvH4_4g21351 FvH4_5g28071 FvH4_5g34871 FvH4_6g21812 FvH4_6g30441 FvH4_6g33631
rosa_chinensis RchiOBHm_Chr1g0320221 RchiOBHm_Chr1g0356521 RchiOBHm_Chr4g0389021 RchiOBHm_Chr5g0020651 RchiOBHm_Chr5g0027511
rosa_laevigata RLG00000002966 RLG00000019504
rosa_multiflora Rmu_co7963640.1_g000001 Rmu_co7988458.1_g000001 Rmu_co8109512.1_g000001 Rmu_co8136160.1_g000001 Rmu_co8253655.1_g000001 Rmu_sc0000388.1_g000040 Rmu_sc0000540.1_g000056 Rmu_sc0000574.1_g000013 Rmu_sc0000623.1_g000001 Rmu_sc0000795.1_g000005 Rmu_sc0000795.1_g000006 Rmu_sc0001063.1_g000001 Rmu_sc0002116.1_g000001 Rmu_sc0002192.1_g000012 Rmu_sc0002640.1_g000015 Rmu_sc0003337.1_g000039 Rmu_sc0004298.1_g000003 Rmu_sc0004771.1_g000001 Rmu_sc0006119.1_g000010 Rmu_sc0006633.1_g000007 Rmu_sc0007025.1_g000016 Rmu_sc0007221.1_g000002 Rmu_sc0007222.1_g000002 Rmu_sc0007806.1_g000016 Rmu_sc0008241.1_g000018 Rmu_sc0008348.1_g000001 Rmu_sc0009034.1_g000001 Rmu_sc0009955.1_g000004 Rmu_sc0018325.1_g000009 Rmu_sc0028328.1_g000002 Rmu_sc0030178.1_g000001 Rmu_sc0034381.1_g000001 Rmu_sc0041085.1_g000001 Rmu_sc0041085.1_g000002
rosa_roxburghii Rroxscaffold_3G00233230 Rroxscaffold_7G00193120 Rroxscaffold_7G00194820
rosa_rugosa Rorug01G0017000 Rorug01G0036400 Rorug01G0062600 Rorug01G0118500 Rorug02G0351500 Rorug02G0497600 Rorug03G0233200 Rorug03G0279500 Rorug03G0347600 Rorug04G0077100 Rorug04G0077200 Rorug04G0210900 Rorug05G0206900 Rorug07G0202900 Rorug07G0334000
rosa_samantha Rh2CG195700 Rh4DG035800
rosa_wichuraiana Rw0G005080 Rw0G013600 Rw2G020080 Rw2G024380 Rw5G002230 Rw5G036790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 297
AccII CGCG 1 cut(s) 188
AciI CCGC 3 cut(s) 188, 455, 528
AclWI GGATC 2 cut(s) 116, 299
AcsI RAATTY 1 cut(s) 56
AcyI GRCGYC 1 cut(s) 109
AfiI CCNNNNNNNGG 5 cut(s) 216, 261, 297, 627, 632
AflIII ACRYGT 1 cut(s) 294
AgsI TTSAA 2 cut(s) 119, 151
AjnI CCWGG 3 cut(s) 382, 396, 626
AleI CACNNNNGTG 1 cut(s) 293
AluBI AGCT 4 cut(s) 95, 203, 415, 595
AluI AGCT 4 cut(s) 95, 203, 415, 595
Alw21I GWGCWC 1 cut(s) 417
AlwI GGATC 2 cut(s) 116, 299
ApoI RAATTY 1 cut(s) 56
AseI ATTAAT 1 cut(s) 354
AspS9I GGNCC 1 cut(s) 623
AsuC2I CCSGG 1 cut(s) 621
AsuHPI GGTGA 3 cut(s) 508, 509, 572
AvaII GGWCC 1 cut(s) 623
BanII GRGCYC 1 cut(s) 417
Bbv12I GWGCWC 1 cut(s) 417
BccI CCATC 4 cut(s) 37, 99, 214, 272
BciT130I CCWGG 3 cut(s) 384, 398, 628
BclI TGATCA 1 cut(s) 19
BcnI CCSGG 1 cut(s) 621
BfaI CTAG 2 cut(s) 348, 585
BglII AGATCT 1 cut(s) 441
Bme1390I CCNGG 4 cut(s) 384, 398, 621, 628
Bme18I GGWCC 1 cut(s) 623
BmgT120I GGNCC 1 cut(s) 623
BmiI GGNNCC 3 cut(s) 395, 602, 625
BmrFI CCNGG 4 cut(s) 384, 398, 621, 628
BmsI GCATC 1 cut(s) 274
BpmI CTGGAG 1 cut(s) 366
BpuMI CCSGG 1 cut(s) 621
BsaHI GRCGYC 1 cut(s) 109
BsaJI CCNNGG 4 cut(s) 308, 619, 626, 627
BsaWI WCCGGW 1 cut(s) 603
BsaXI ACNNNNNCTCC 1 cut(s) 31
Bsc4I CCNNNNNNNGG 5 cut(s) 216, 261, 297, 627, 632
Bse118I RCCGGY 1 cut(s) 254
BseBI CCWGG 3 cut(s) 384, 398, 628
BseDI CCNNGG 4 cut(s) 308, 619, 626, 627
BseGI GGATG 4 cut(s) 110, 206, 283, 328
BseLI CCNNNNNNNGG 5 cut(s) 216, 261, 297, 627, 632
BseMII CTCAG 1 cut(s) 117
BsgI GTGCAG 1 cut(s) 233
Bsh1236I CGCG 1 cut(s) 188
BsiHKAI GWGCWC 1 cut(s) 417
BsiSI CCGG 3 cut(s) 255, 604, 621
BslFI GGGAC 2 cut(s) 197, 609
BslI CCNNNNNNNGG 5 cut(s) 216, 261, 297, 627, 632
BsmFI GGGAC 2 cut(s) 197, 609
BsmI GAATGC 1 cut(s) 225
Bsp1286I GDGCHC 1 cut(s) 417
Bsp143I GATC 5 cut(s) 19, 121, 304, 441, 478
BspACI CCGC 3 cut(s) 188, 455, 528
BspCNI CTCAG 1 cut(s) 118
BspFNI CGCG 1 cut(s) 188
BspLI GGNNCC 3 cut(s) 395, 602, 625
BspPI GGATC 2 cut(s) 116, 299
BspQI GCTCTTC 1 cut(s) 422
BsrFI RCCGGY 1 cut(s) 254
BssAI RCCGGY 1 cut(s) 254
BssECI CCNNGG 4 cut(s) 308, 619, 626, 627
BssMI GATC 5 cut(s) 19, 121, 304, 441, 478
BssNI GRCGYC 1 cut(s) 109
BssT1I CCWWGG 1 cut(s) 308
Bst2UI CCWGG 3 cut(s) 384, 398, 628
Bst4CI ACNGT 1 cut(s) 520
Bst6I CTCTTC 1 cut(s) 422
BstACI GRCGYC 1 cut(s) 109
BstC8I GCNNGC 4 cut(s) 252, 575, 593, 615
BstDEI CTNAG 2 cut(s) 126, 458
BstF5I GGATG 4 cut(s) 110, 206, 283, 328
BstFNI CGCG 1 cut(s) 188
BstKTI GATC 5 cut(s) 22, 124, 307, 444, 481
BstMBI GATC 5 cut(s) 19, 121, 304, 441, 478
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstNI CCWGG 3 cut(s) 384, 398, 628
BstNSI RCATGY 1 cut(s) 577
BstSCI CCNGG 4 cut(s) 382, 396, 619, 626
BstUI CGCG 1 cut(s) 188
BstX2I RGATCY 2 cut(s) 121, 441
BstXI CCANNNNNNTGG 1 cut(s) 390
BstYI RGATCY 2 cut(s) 121, 441
BtsCI GGATG 4 cut(s) 110, 206, 283, 328
Cac8I GCNNGC 4 cut(s) 252, 575, 593, 615
Cfr10I RCCGGY 1 cut(s) 254
Cfr13I GGNCC 1 cut(s) 623
CseI GACGC 2 cut(s) 98, 194
CviAII CATG 2 cut(s) 410, 574
DdeI CTNAG 2 cut(s) 126, 458
DpnI GATC 5 cut(s) 21, 123, 306, 443, 480
DpnII GATC 5 cut(s) 19, 121, 304, 441, 478
Eam1104I CTCTTC 1 cut(s) 422
EarI CTCTTC 1 cut(s) 422
EciI GGCGGA 1 cut(s) 517
Ecl136II GAGCTC 1 cut(s) 415
Eco130I CCWWGG 1 cut(s) 308
Eco24I GRGCYC 1 cut(s) 417
Eco47I GGWCC 1 cut(s) 623
Eco53kI GAGCTC 1 cut(s) 415
EcoICRI GAGCTC 1 cut(s) 415
EcoRII CCWGG 3 cut(s) 382, 396, 626
EcoT14I CCWWGG 1 cut(s) 308
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 417
ErhI CCWWGG 1 cut(s) 308
FaeI CATG 2 cut(s) 413, 577
FalI AAGNNNNNCTT 2 cut(s) 497, 529
FaqI GGGAC 2 cut(s) 197, 609
FatI CATG 2 cut(s) 409, 573
FauI CCCGC 1 cut(s) 462
FbaI TGATCA 1 cut(s) 19
FokI GGATG 4 cut(s) 117, 193, 290, 335
FriOI GRGCYC 1 cut(s) 417
FspBI CTAG 2 cut(s) 348, 585
GsuI CTGGAG 1 cut(s) 366
HapII CCGG 3 cut(s) 255, 604, 621
HgaI GACGC 2 cut(s) 98, 194
Hin1I GRCGYC 1 cut(s) 109
Hin1II CATG 2 cut(s) 413, 577
HinfI GANTC 1 cut(s) 128
HpaII CCGG 3 cut(s) 255, 604, 621
HphI GGTGA 3 cut(s) 508, 509, 572
Hpy166II GTNNAC 3 cut(s) 32, 288, 300
Hpy188I TCNGA 2 cut(s) 231, 367
Hpy188III TCNNGA 2 cut(s) 119, 125
Hpy8I GTNNAC 3 cut(s) 32, 288, 300
HpyAV CCTTC 3 cut(s) 145, 499, 626
HpyCH4III ACNGT 1 cut(s) 520
HpyCH4IV ACGT 1 cut(s) 294
HpyCH4V TGCA 2 cut(s) 4, 250
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
HpyF3I CTNAG 2 cut(s) 126, 458
HpySE526I ACGT 1 cut(s) 294
Hsp92I GRCGYC 1 cut(s) 109
Hsp92II CATG 2 cut(s) 413, 577
Ksp22I TGATCA 1 cut(s) 19
Kzo9I GATC 5 cut(s) 19, 121, 304, 441, 478
LguI GCTCTTC 1 cut(s) 422
LmnI GCTCC 1 cut(s) 208
LweI GCATC 1 cut(s) 274
MaeI CTAG 2 cut(s) 348, 585
MaeII ACGT 1 cut(s) 294
MalI GATC 5 cut(s) 21, 123, 306, 443, 480
MboI GATC 5 cut(s) 19, 121, 304, 441, 478
MboII GAAGA 1 cut(s) 409
MflI RGATCY 2 cut(s) 121, 441
MhlI GDGCHC 1 cut(s) 417
MluCI AATT 5 cut(s) 23, 56, 114, 175, 351
MlyI GAGTC 1 cut(s) 137
MnlI CCTC 3 cut(s) 3, 184, 503
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 3 cut(s) 78, 354, 637
MslI CAYNNNNRTG 1 cut(s) 293
MspI CCGG 3 cut(s) 255, 604, 621
MspR9I CCNGG 4 cut(s) 384, 398, 621, 628
Mva1269I GAATGC 1 cut(s) 225
MvaI CCWGG 3 cut(s) 384, 398, 628
MvnI CGCG 1 cut(s) 188
MwoI GCNNNNNNNGC 1 cut(s) 92
NciI CCSGG 1 cut(s) 621
NdeII GATC 5 cut(s) 19, 121, 304, 441, 478
NlaIII CATG 2 cut(s) 413, 577
NlaIV GGNNCC 3 cut(s) 395, 602, 625
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 577
OliI CACNNNNGTG 1 cut(s) 293
PaeI GCATGC 1 cut(s) 577
PasI CCCWGGG 1 cut(s) 627
PciSI GCTCTTC 1 cut(s) 422
PctI GAATGC 1 cut(s) 225
PflMI CCANNNNNTGG 1 cut(s) 297
PleI GAGTC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 136
PshBI ATTAAT 1 cut(s) 354
Psp124BI GAGCTC 1 cut(s) 417
Psp6I CCWGG 3 cut(s) 382, 396, 626
PspGI CCWGG 3 cut(s) 382, 396, 626
PspN4I GGNNCC 3 cut(s) 395, 602, 625
PspPI GGNCC 1 cut(s) 623
PsuI RGATCY 2 cut(s) 121, 441
RseI CAYNNNNRTG 1 cut(s) 293
SacI GAGCTC 1 cut(s) 417
SapI GCTCTTC 1 cut(s) 422
SaqAI TTAA 3 cut(s) 78, 354, 637
Sau3AI GATC 5 cut(s) 19, 121, 304, 441, 478
Sau96I GGNCC 1 cut(s) 623
SchI GAGTC 1 cut(s) 137
ScrFI CCNGG 4 cut(s) 384, 398, 621, 628
SduI GDGCHC 1 cut(s) 417
SetI ASST 9 cut(s) 37, 97, 195, 205, 297, 388, 417, 597, 637
SfaNI GCATC 1 cut(s) 274
SinI GGWCC 1 cut(s) 623
SmiMI CAYNNNNRTG 1 cut(s) 293
SphI GCATGC 1 cut(s) 577
Sse9I AATT 5 cut(s) 23, 56, 114, 175, 351
SsiI CCGC 3 cut(s) 188, 455, 528
SspMI CTAG 2 cut(s) 348, 585
SstI GAGCTC 1 cut(s) 417
StyD4I CCNGG 4 cut(s) 382, 396, 619, 626
StyI CCWWGG 1 cut(s) 308
TaaI ACNGT 1 cut(s) 520
TaiI ACGT 1 cut(s) 297
TasI AATT 5 cut(s) 23, 56, 114, 175, 351
Tru1I TTAA 3 cut(s) 78, 354, 637
Tru9I TTAA 3 cut(s) 78, 354, 637
Van91I CCANNNNNTGG 1 cut(s) 297
VpaK11BI GGWCC 1 cut(s) 623
VspI ATTAAT 1 cut(s) 354
XapI RAATTY 1 cut(s) 56
XceI RCATGY 1 cut(s) 577
XcmI CCANNNNNNNNNTGG 1 cut(s) 213
XspI CTAG 2 cut(s) 348, 585
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.