Rmu_sc0007025.1_g000016

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007025.1
OG0000591
Physical Location & Seq
Forward (+)
52461 .. 53684
1224 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007025.1_g000016.1.cds

Sequence Viewer

Length: 1011 bp
atgctggctaagcaggggtggaggatcatccaaaacacacagtcattaccttctagactgctgaaggaaatttacttccctcattgtaacttttgggaagcagagttgggttcgtctccctcgtatgcatggcggagtatagtacaaggccgggatattttacgggctggaattcgaaggcatatcggggatggaagttctactaacatttggaatgatccctggttgttgggtcaagacttgcaacctttctataattcgagggttcagctagtctctgagctactatcttctctgggtttgtggaatcaggctttactttctgagttgtttcctccggacattgttcagaaaattttggctttgcctcttagtgtccgggttcatgatgatcgctggatttggactggtgataagaagggtgtcttcactgttaaatcagcgtaccaattggcaaggaatagagtcttggacgagtctccaggcccacccaatcctaatacccaatgtcctttctgtgaggaagaagttgaatcgcctcttcatgctcttcgtgattgcagccatgcagtttcgttttttcaattggctccagttcagtcttcagcttcggcctcaagtatttttgattggttagcctcctccttttcccaatcttccactacttttgctacattgctgatgcttatttgggctatatggagaaatcaggatgcaaaagtgtggaatggagatgtcaaaacggcctcagatgctgtcccaattacattaggtttggtcaagcttaatgttgatgctgcctttgatagtgctacggggcatactggcgttgggggggtctttcgagacttcaatggttcttgtcaatggttctgtcaggttctcaaactcggcgaggcatggagagcttcttgccttgttgcatgggatcgaactagccattgtccatcactttgttccattgatggtggaaatggattgacaagatttggtcaacgctgttgggactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

336

Amino Acids

37.5

Weight (kDa)

6.38

Isoelectric Point (pI)

50.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03566
fragaria_vesca FvH4_2g12622 FvH4_2g12642 FvH4_2g13902 FvH4_3g05011 FvH4_3g18961 FvH4_3g31940 FvH4_4g08421 FvH4_4g21351 FvH4_5g28071 FvH4_5g34871 FvH4_6g21812 FvH4_6g30441 FvH4_6g33631
rosa_chinensis RchiOBHm_Chr1g0320221 RchiOBHm_Chr1g0356521 RchiOBHm_Chr4g0389021 RchiOBHm_Chr5g0020651 RchiOBHm_Chr5g0027511
rosa_laevigata RLG00000002966 RLG00000019504
rosa_multiflora Rmu_co7963640.1_g000001 Rmu_co7988458.1_g000001 Rmu_co8109512.1_g000001 Rmu_co8136160.1_g000001 Rmu_co8253655.1_g000001 Rmu_sc0000388.1_g000040 Rmu_sc0000540.1_g000056 Rmu_sc0000574.1_g000013 Rmu_sc0000623.1_g000001 Rmu_sc0000795.1_g000005 Rmu_sc0000795.1_g000006 Rmu_sc0001063.1_g000001 Rmu_sc0002116.1_g000001 Rmu_sc0002192.1_g000012 Rmu_sc0002640.1_g000015 Rmu_sc0003337.1_g000039 Rmu_sc0004298.1_g000003 Rmu_sc0004771.1_g000001 Rmu_sc0006119.1_g000010 Rmu_sc0006633.1_g000007 Rmu_sc0007025.1_g000016 Rmu_sc0007221.1_g000002 Rmu_sc0007222.1_g000002 Rmu_sc0007806.1_g000016 Rmu_sc0008241.1_g000018 Rmu_sc0008348.1_g000001 Rmu_sc0009034.1_g000001 Rmu_sc0009955.1_g000004 Rmu_sc0018325.1_g000009 Rmu_sc0028328.1_g000002 Rmu_sc0030178.1_g000001 Rmu_sc0034381.1_g000001 Rmu_sc0041085.1_g000001 Rmu_sc0041085.1_g000002
rosa_roxburghii Rroxscaffold_3G00233230 Rroxscaffold_7G00193120 Rroxscaffold_7G00194820
rosa_rugosa Rorug01G0017000 Rorug01G0036400 Rorug01G0062600 Rorug01G0118500 Rorug02G0351500 Rorug02G0497600 Rorug03G0233200 Rorug03G0279500 Rorug03G0347600 Rorug04G0077100 Rorug04G0077200 Rorug04G0210900 Rorug05G0206900 Rorug07G0202900 Rorug07G0334000
rosa_samantha Rh2CG195700 Rh4DG035800
rosa_wichuraiana Rw0G005080 Rw0G013600 Rw2G020080 Rw2G024380 Rw5G002230 Rw5G036790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 337
AciI CCGC 1 cut(s) 133
AclWI GGATC 3 cut(s) 32, 212, 936
AcsI RAATTY 3 cut(s) 69, 171, 354
AcuI CTGAAG 2 cut(s) 83, 588
AfaI GTAC 2 cut(s) 144, 446
AgsI TTSAA 3 cut(s) 533, 584, 853
AjnI CCWGG 2 cut(s) 221, 481
AjuI GAANNNNNNNTTGG 2 cut(s) 452, 484
AluBI AGCT 5 cut(s) 271, 283, 608, 784, 908
AluI AGCT 5 cut(s) 271, 283, 608, 784, 908
Alw26I GTCTC 4 cut(s) 120, 280, 483, 840
AlwI GGATC 3 cut(s) 32, 212, 936
AlwNI CAGNNNCTG 1 cut(s) 755
Aor13HI TCCGGA 1 cut(s) 337
AoxI GGCC 4 cut(s) 148, 484, 612, 744
ApeKI GCWGC 2 cut(s) 561, 797
ApoI RAATTY 3 cut(s) 69, 171, 354
AspS9I GGNCC 1 cut(s) 485
AsuC2I CCSGG 2 cut(s) 152, 380
AsuHPI GGTGA 1 cut(s) 422
AsuII TTCGAA 1 cut(s) 175
BarI GAAGNNNNNNTAC 2 cut(s) 56, 88
BbsI GAAGAC 2 cut(s) 418, 594
BbvI GCAGC 2 cut(s) 573, 784
BccI CCATC 3 cut(s) 185, 955, 959
BceAI ACGGC 1 cut(s) 759
BciT130I CCWGG 2 cut(s) 223, 483
BcnI CCSGG 2 cut(s) 152, 380
BcoDI GTCTC 4 cut(s) 120, 280, 483, 840
BfaI CTAG 3 cut(s) 54, 272, 936
BisI GCNGC 2 cut(s) 562, 798
BlpI GCTNAGC 1 cut(s) 9
BlsI GCNGC 2 cut(s) 563, 799
Bme1390I CCNGG 4 cut(s) 152, 223, 380, 483
BmgT120I GGNCC 1 cut(s) 485
BmiI GGNNCC 1 cut(s) 591
BmrFI CCNGG 4 cut(s) 152, 223, 380, 483
BmsI GCATC 4 cut(s) 672, 703, 742, 784
BpiI GAAGAC 2 cut(s) 418, 594
BpmI CTGGAG 2 cut(s) 465, 576
Bpu1102I GCTNAGC 1 cut(s) 9
Bpu14I TTCGAA 1 cut(s) 175
BpuEI CTTGAG 1 cut(s) 601
BpuMI CCSGG 2 cut(s) 152, 380
BsaJI CCNNGG 1 cut(s) 221
BsaWI WCCGGW 1 cut(s) 337
Bse1I ACTGG 3 cut(s) 412, 593, 829
Bse3DI GCAATG 1 cut(s) 674
BseAI TCCGGA 1 cut(s) 337
BseBI CCWGG 2 cut(s) 223, 483
BseDI CCNNGG 1 cut(s) 221
BseGI GGATG 3 cut(s) 27, 196, 718
BseMI GCAATG 1 cut(s) 674
BseMII CTCAG 3 cut(s) 270, 315, 762
BseNI ACTGG 3 cut(s) 412, 593, 829
BseRI GAGGAG 1 cut(s) 631
BseXI GCAGC 2 cut(s) 573, 784
BshFI GGCC 4 cut(s) 150, 486, 614, 746
BsiSI CCGG 3 cut(s) 151, 338, 379
BslFI GGGAC 1 cut(s) 743
BsmAI GTCTC 4 cut(s) 120, 280, 483, 840
BsmBI CGTCTC 1 cut(s) 120
BsmFI GGGAC 1 cut(s) 743
BsnI GGCC 4 cut(s) 150, 486, 614, 746
Bsp119I TTCGAA 1 cut(s) 175
Bsp13I TCCGGA 1 cut(s) 337
Bsp143I GATC 4 cut(s) 24, 217, 391, 928
Bsp1720I GCTNAGC 1 cut(s) 9
BspACI CCGC 1 cut(s) 133
BspANI GGCC 4 cut(s) 150, 486, 614, 746
BspCNI CTCAG 3 cut(s) 271, 316, 761
BspEI TCCGGA 1 cut(s) 337
BspHI TCATGA 1 cut(s) 385
BspLI GGNNCC 1 cut(s) 591
BspPI GGATC 3 cut(s) 32, 212, 936
BspQI GCTCTTC 1 cut(s) 555
BspT104I TTCGAA 1 cut(s) 175
BsrDI GCAATG 1 cut(s) 674
BsrI ACTGG 3 cut(s) 412, 593, 829
BssECI CCNNGG 1 cut(s) 221
BssMI GATC 4 cut(s) 24, 217, 391, 928
Bst2UI CCWGG 2 cut(s) 223, 483
Bst4CI ACNGT 2 cut(s) 42, 433
Bst6I CTCTTC 2 cut(s) 546, 555
BstBI TTCGAA 1 cut(s) 175
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 5 cut(s) 9, 279, 324, 371, 748
BstF5I GGATG 3 cut(s) 27, 196, 718
BstKTI GATC 4 cut(s) 27, 220, 394, 931
BstMAI GTCTC 4 cut(s) 120, 280, 483, 840
BstMBI GATC 4 cut(s) 24, 217, 391, 928
BstMWI GCNNNNNNNGC 3 cut(s) 10, 752, 905
BstNI CCWGG 2 cut(s) 223, 483
BstSCI CCNGG 4 cut(s) 150, 221, 378, 481
BstV1I GCAGC 2 cut(s) 573, 784
BstV2I GAAGAC 2 cut(s) 418, 594
BsuRI GGCC 4 cut(s) 150, 486, 614, 746
BtsCI GGATG 3 cut(s) 27, 196, 718
BtsIMutI CAGTG 1 cut(s) 429
Cac8I GCNNGC 1 cut(s) 6
CaiI CAGNNNCTG 1 cut(s) 755
CciI TCATGA 1 cut(s) 385
Cfr13I GGNCC 1 cut(s) 485
Csp6I GTAC 2 cut(s) 143, 445
CspCI CAANNNNNGTGG 2 cut(s) 649, 684
CviAII CATG 6 cut(s) 129, 386, 545, 566, 900, 924
CviQI GTAC 2 cut(s) 143, 445
DdeI CTNAG 5 cut(s) 9, 279, 324, 371, 748
DpnI GATC 4 cut(s) 26, 219, 393, 930
DpnII GATC 4 cut(s) 24, 217, 391, 928
Eam1104I CTCTTC 2 cut(s) 546, 555
EarI CTCTTC 2 cut(s) 546, 555
EciI GGCGGA 1 cut(s) 148
Eco57I CTGAAG 2 cut(s) 83, 588
EcoRI GAATTC 1 cut(s) 171
EcoRII CCWGG 2 cut(s) 221, 481
EcoT22I ATGCAT 1 cut(s) 130
Esp3I CGTCTC 1 cut(s) 120
FaeI CATG 6 cut(s) 132, 389, 548, 569, 903, 927
FalI AAGNNNNNCTT 2 cut(s) 410, 442
FaqI GGGAC 1 cut(s) 743
FatI CATG 6 cut(s) 128, 385, 544, 565, 899, 923
Fnu4HI GCNGC 2 cut(s) 562, 798
FokI GGATG 3 cut(s) 14, 203, 725
Fsp4HI GCNGC 2 cut(s) 562, 798
FspBI CTAG 3 cut(s) 54, 272, 936
GluI GCNGC 2 cut(s) 562, 798
GsuI CTGGAG 2 cut(s) 465, 576
HaeIII GGCC 4 cut(s) 150, 486, 614, 746
HapII CCGG 3 cut(s) 151, 338, 379
Hin1II CATG 6 cut(s) 132, 389, 548, 569, 903, 927
HincII GTYRAC 1 cut(s) 995
HindII GTYRAC 1 cut(s) 995
HindIII AAGCTT 1 cut(s) 782
HinfI GANTC 4 cut(s) 307, 465, 476, 533
HpaII CCGG 3 cut(s) 151, 338, 379
HphI GGTGA 1 cut(s) 422
Hpy166II GTNNAC 1 cut(s) 995
Hpy188I TCNGA 4 cut(s) 280, 325, 351, 751
Hpy188III TCNNGA 7 cut(s) 54, 236, 338, 386, 554, 710, 845
Hpy8I GTNNAC 1 cut(s) 995
HpyAV CCTTC 4 cut(s) 58, 60, 171, 412
HpyCH4III ACNGT 2 cut(s) 42, 433
HpyCH4V TGCA 6 cut(s) 128, 244, 561, 569, 716, 923
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 752, 905
HpyF3I CTNAG 5 cut(s) 9, 279, 324, 371, 748
Hsp92II CATG 6 cut(s) 132, 389, 548, 569, 903, 927
Kpn2I TCCGGA 1 cut(s) 337
Kzo9I GATC 4 cut(s) 24, 217, 391, 928
LguI GCTCTTC 1 cut(s) 555
LmnI GCTCC 1 cut(s) 595
Lsp1109I GCAGC 2 cut(s) 573, 784
LweI GCATC 4 cut(s) 672, 703, 742, 784
MaeI CTAG 3 cut(s) 54, 272, 936
MaeIII GTNAC 1 cut(s) 86
MalI GATC 4 cut(s) 26, 219, 393, 930
MboI GATC 4 cut(s) 24, 217, 391, 928
MboII GAAGA 7 cut(s) 282, 418, 533, 536, 542, 594, 648
MfeI CAATTG 2 cut(s) 449, 584
MluCI AATT 7 cut(s) 69, 171, 256, 354, 449, 584, 762
MlyI GAGTC 2 cut(s) 474, 485
Mph1103I ATGCAT 1 cut(s) 130
MroI TCCGGA 1 cut(s) 337
MseI TTAA 2 cut(s) 435, 786
MspI CCGG 3 cut(s) 151, 338, 379
MspR9I CCNGG 4 cut(s) 152, 223, 380, 483
MunI CAATTG 2 cut(s) 449, 584
MvaI CCWGG 2 cut(s) 223, 483
MwoI GCNNNNNNNGC 3 cut(s) 10, 752, 905
NciI CCSGG 2 cut(s) 152, 380
NdeII GATC 4 cut(s) 24, 217, 391, 928
NlaIII CATG 6 cut(s) 132, 389, 548, 569, 903, 927
NlaIV GGNNCC 1 cut(s) 591
NmeAIII GCCGAG 1 cut(s) 870
NsiI ATGCAT 1 cut(s) 130
NspV TTCGAA 1 cut(s) 175
PagI TCATGA 1 cut(s) 385
PciSI GCTCTTC 1 cut(s) 555
PcsI WCGNNNNNNNCGW 1 cut(s) 119
PfeI GAWTC 2 cut(s) 307, 533
PkrI GCNGC 2 cut(s) 563, 799
PleI GAGTC 2 cut(s) 473, 484
PpsI GAGTC 2 cut(s) 473, 484
Psp6I CCWGG 2 cut(s) 221, 481
PspGI CCWGG 2 cut(s) 221, 481
PspN4I GGNNCC 1 cut(s) 591
PspPI GGNCC 1 cut(s) 485
PstNI CAGNNNCTG 1 cut(s) 755
RsaI GTAC 2 cut(s) 144, 446
RsaNI GTAC 2 cut(s) 143, 445
SapI GCTCTTC 1 cut(s) 555
SaqAI TTAA 2 cut(s) 435, 786
SatI GCNGC 2 cut(s) 562, 798
Sau3AI GATC 4 cut(s) 24, 217, 391, 928
Sau96I GGNCC 1 cut(s) 485
SchI GAGTC 2 cut(s) 474, 485
ScrFI CCNGG 4 cut(s) 152, 223, 380, 483
SetI ASST 9 cut(s) 52, 250, 273, 285, 610, 775, 786, 882, 910
SfaNI GCATC 4 cut(s) 672, 703, 742, 784
SfuI TTCGAA 1 cut(s) 175
SmlI CTYRAG 1 cut(s) 616
SmoI CTYRAG 1 cut(s) 616
Sse9I AATT 7 cut(s) 69, 171, 256, 354, 449, 584, 762
SsiI CCGC 1 cut(s) 133
SspMI CTAG 3 cut(s) 54, 272, 936
StyD4I CCNGG 4 cut(s) 150, 221, 378, 481
TaaI ACNGT 2 cut(s) 42, 433
TaqI TCGA 4 cut(s) 175, 260, 844, 931
TasI AATT 7 cut(s) 69, 171, 256, 354, 449, 584, 762
TatI WGTACW 1 cut(s) 142
TfiI GAWTC 2 cut(s) 307, 533
Tru1I TTAA 2 cut(s) 435, 786
Tru9I TTAA 2 cut(s) 435, 786
TscAI CASTG 1 cut(s) 436
TseI GCWGC 2 cut(s) 561, 797
TspDTI ATGAA 2 cut(s) 374, 533
TspRI CASTG 1 cut(s) 436
XapI RAATTY 3 cut(s) 69, 171, 354
XbaI TCTAGA 1 cut(s) 53
XspI CTAG 3 cut(s) 54, 272, 936
Zsp2I ATGCAT 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.