Rmu_sc0007806.1_g000016

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007806.1
OG0000591
Physical Location & Seq
Reverse (-)
67938 .. 69112
1175 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007806.1_g000016.1.cds

Sequence Viewer

Length: 1005 bp
atgggttatcaagatcttcaagtaggggatgagatttatcccactctcctaaaggtaatcgaaggatcaaggttggcaattgttgttctgtcccaaaattatgcttcttctgcttggtgtttggatgaacttacaaagatttgtcagttcatggaggacggccacagaattcttccagtttttttttatgatgtcaagcctagtgatgtacgaaatcaaaagaggagtcttgaagatgctttcaccaagcatgagcgattcgaatcggagaaggtcaagcagtggagagatgctttaagaaaagtggccgacttcgctgagttggttccaaaatacaggcttcgtgaccgtggtattgatttcgatacccaatgccctctctgtgatgaagaaatagagactcctctgcatgcggttcgagattgtccccatgccactagtttgtttcaggaggccaacctcccattatacacggcccctacaagtgttgcaaactggcttttgttggcttcttcgtcgagtcctgggtctttcgcctattacttgatgattttgtgggctatttggagaaatagaaacgctaaagtttgggagggtgattttaaacaagcgtctcagattgttccaatgactttgggttggttggaagaatttaaagctgctcgttcttctacccaatcgggtttggctgctaggccggttcataggtggacgaagcctcctttgggcttcgttaaactgaatgttgatgctgcctttgatcaaggctcaggccgctcggggttaggcggggagtggagttggctattgagaataatcttaccccccttgattgtggaaacagattgtttggatttggtgtctggattagcgtctgctacactagatgggtcggacctcgacttcttgttggcagatttgtgggttttgttgcatgaggcattgggagctcgtgtcctcaaggttggacgtcaggccaatggtgtggctcgtgtcttggcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

334

Amino Acids

37.52

Weight (kDa)

5.61

Isoelectric Point (pI)

43.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03566
fragaria_vesca FvH4_2g12622 FvH4_2g12642 FvH4_2g13902 FvH4_3g05011 FvH4_3g18961 FvH4_3g31940 FvH4_4g08421 FvH4_4g21351 FvH4_5g28071 FvH4_5g34871 FvH4_6g21812 FvH4_6g30441 FvH4_6g33631
rosa_chinensis RchiOBHm_Chr1g0320221 RchiOBHm_Chr1g0356521 RchiOBHm_Chr4g0389021 RchiOBHm_Chr5g0020651 RchiOBHm_Chr5g0027511
rosa_laevigata RLG00000002966 RLG00000019504
rosa_multiflora Rmu_co7963640.1_g000001 Rmu_co7988458.1_g000001 Rmu_co8109512.1_g000001 Rmu_co8136160.1_g000001 Rmu_co8253655.1_g000001 Rmu_sc0000388.1_g000040 Rmu_sc0000540.1_g000056 Rmu_sc0000574.1_g000013 Rmu_sc0000623.1_g000001 Rmu_sc0000795.1_g000005 Rmu_sc0000795.1_g000006 Rmu_sc0001063.1_g000001 Rmu_sc0002116.1_g000001 Rmu_sc0002192.1_g000012 Rmu_sc0002640.1_g000015 Rmu_sc0003337.1_g000039 Rmu_sc0004298.1_g000003 Rmu_sc0004771.1_g000001 Rmu_sc0006119.1_g000010 Rmu_sc0006633.1_g000007 Rmu_sc0007025.1_g000016 Rmu_sc0007221.1_g000002 Rmu_sc0007222.1_g000002 Rmu_sc0007806.1_g000016 Rmu_sc0008241.1_g000018 Rmu_sc0008348.1_g000001 Rmu_sc0009034.1_g000001 Rmu_sc0009955.1_g000004 Rmu_sc0018325.1_g000009 Rmu_sc0028328.1_g000002 Rmu_sc0030178.1_g000001 Rmu_sc0034381.1_g000001 Rmu_sc0041085.1_g000001 Rmu_sc0041085.1_g000002
rosa_roxburghii Rroxscaffold_3G00233230 Rroxscaffold_7G00193120 Rroxscaffold_7G00194820
rosa_rugosa Rorug01G0017000 Rorug01G0036400 Rorug01G0062600 Rorug01G0118500 Rorug02G0351500 Rorug02G0497600 Rorug03G0233200 Rorug03G0279500 Rorug03G0347600 Rorug04G0077100 Rorug04G0077200 Rorug04G0210900 Rorug05G0206900 Rorug07G0202900 Rorug07G0334000
rosa_samantha Rh2CG195700 Rh4DG035800
rosa_wichuraiana Rw0G005080 Rw0G013600 Rw2G020080 Rw2G024380 Rw5G002230 Rw5G036790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 973
AccBSI CCGCTC 1 cut(s) 777
AciI CCGC 3 cut(s) 413, 775, 789
AclWI GGATC 1 cut(s) 73
AcoI YGGCCR 2 cut(s) 160, 306
AcsI RAATTY 2 cut(s) 168, 650
AcyI GRCGYC 1 cut(s) 970
AfaI GTAC 1 cut(s) 210
AfiI CCNNNNNNNGG 1 cut(s) 725
AgsI TTSAA 2 cut(s) 20, 233
AhlI ACTAGT 1 cut(s) 437
AjnI CCWGG 1 cut(s) 523
AjuI GAANNNNNNNTTGG 2 cut(s) 707, 739
AluBI AGCT 2 cut(s) 659, 950
AluI AGCT 2 cut(s) 659, 950
Alw21I GWGCWC 1 cut(s) 952
Alw26I GTCTC 2 cut(s) 392, 618
AlwI GGATC 1 cut(s) 73
Ama87I CYCGRG 1 cut(s) 778
AoxI GGCC 7 cut(s) 160, 306, 453, 474, 695, 772, 975
ApeKI GCWGC 3 cut(s) 659, 689, 752
ApoI RAATTY 2 cut(s) 168, 650
ArsI GACNNNNNNTTYG 2 cut(s) 211, 243
AspS9I GGNCC 2 cut(s) 475, 895
AsuHPI GGTGA 2 cut(s) 235, 608
AsuII TTCGAA 1 cut(s) 261
AvaI CYCGRG 1 cut(s) 778
AvaII GGWCC 1 cut(s) 895
BanII GRGCYC 1 cut(s) 952
BauI CACGAG 2 cut(s) 951, 990
Bbv12I GWGCWC 1 cut(s) 952
BbvI GCAGC 3 cut(s) 646, 676, 739
BccI CCATC 1 cut(s) 881
BceAI ACGGC 2 cut(s) 175, 489
BcgI CGANNNNNNTGC 2 cut(s) 398, 432
BciT130I CCWGG 1 cut(s) 525
BclI TGATCA 1 cut(s) 760
BcoDI GTCTC 2 cut(s) 392, 618
BcuI ACTAGT 1 cut(s) 437
BfaI CTAG 4 cut(s) 201, 438, 693, 884
BglII AGATCT 1 cut(s) 13
BisI GCNGC 4 cut(s) 660, 690, 753, 775
BlsI GCNGC 4 cut(s) 661, 691, 754, 776
Bme1390I CCNGG 1 cut(s) 525
Bme18I GGWCC 1 cut(s) 895
BmeT110I CYCGRG 1 cut(s) 778
BmgT120I GGNCC 2 cut(s) 475, 895
BmiI GGNNCC 2 cut(s) 327, 477
BmrFI CCNGG 1 cut(s) 525
BmsI GCATC 3 cut(s) 226, 280, 739
Bpu10I CCTNAGC 1 cut(s) 769
Bpu14I TTCGAA 1 cut(s) 261
BpuEI CTTGAG 1 cut(s) 944
BsaBI GATNNNNATC 1 cut(s) 262
BsaHI GRCGYC 1 cut(s) 970
BsaJI CCNNGG 2 cut(s) 349, 524
BsaXI ACNNNNNCTCC 4 cut(s) 703, 733, 939, 969
Bsc4I CCNNNNNNNGG 1 cut(s) 725
Bse118I RCCGGY 1 cut(s) 697
Bse1I ACTGG 2 cut(s) 176, 500
Bse8I GATNNNNATC 1 cut(s) 262
BseBI CCWGG 1 cut(s) 525
BseDI CCNNGG 2 cut(s) 349, 524
BseGI GGATG 2 cut(s) 34, 130
BseJI GATNNNNATC 1 cut(s) 262
BseLI CCNNNNNNNGG 1 cut(s) 725
BseMII CTCAG 3 cut(s) 309, 629, 783
BseNI ACTGG 2 cut(s) 176, 500
BseRI GAGGAG 2 cut(s) 238, 393
BseXI GCAGC 3 cut(s) 646, 676, 739
BshFI GGCC 7 cut(s) 162, 308, 455, 476, 697, 774, 977
BsiHKAI GWGCWC 1 cut(s) 952
BsiHKCI CYCGRG 1 cut(s) 778
BsiSI CCGG 1 cut(s) 698
BslFI GGGAC 2 cut(s) 76, 411
BslI CCNNNNNNNGG 1 cut(s) 725
BsmAI GTCTC 2 cut(s) 392, 618
BsmBI CGTCTC 1 cut(s) 618
BsmFI GGGAC 2 cut(s) 76, 411
BsnI GGCC 7 cut(s) 162, 308, 455, 476, 697, 774, 977
BsoBI CYCGRG 1 cut(s) 778
Bsp119I TTCGAA 1 cut(s) 261
Bsp1286I GDGCHC 1 cut(s) 952
Bsp143I GATC 3 cut(s) 13, 65, 760
BspACI CCGC 3 cut(s) 413, 775, 789
BspANI GGCC 7 cut(s) 162, 308, 455, 476, 697, 774, 977
BspCNI CTCAG 3 cut(s) 310, 628, 782
BspLI GGNNCC 2 cut(s) 327, 477
BspPI GGATC 1 cut(s) 73
BspT104I TTCGAA 1 cut(s) 261
BsrBI CCGCTC 1 cut(s) 777
BsrFI RCCGGY 1 cut(s) 697
BsrI ACTGG 2 cut(s) 176, 500
BssAI RCCGGY 1 cut(s) 697
BssECI CCNNGG 2 cut(s) 349, 524
BssMI GATC 3 cut(s) 13, 65, 760
BssNI GRCGYC 1 cut(s) 970
BssSI CACGAG 2 cut(s) 951, 990
Bst2BI CACGAG 2 cut(s) 951, 990
Bst2UI CCWGG 1 cut(s) 525
Bst4CI ACNGT 1 cut(s) 350
BstACI GRCGYC 1 cut(s) 970
BstBI TTCGAA 1 cut(s) 261
BstC8I GCNNGC 1 cut(s) 411
BstDEI CTNAG 4 cut(s) 318, 615, 769, 1002
BstDSI CCRYGG 1 cut(s) 349
BstF5I GGATG 2 cut(s) 34, 130
BstKTI GATC 3 cut(s) 16, 68, 763
BstMAI GTCTC 2 cut(s) 392, 618
BstMBI GATC 3 cut(s) 13, 65, 760
BstMWI GCNNNNNNNGC 4 cut(s) 110, 314, 774, 947
BstNI CCWGG 1 cut(s) 525
BstNSI RCATGY 1 cut(s) 413
BstSCI CCNGG 1 cut(s) 523
BstV1I GCAGC 3 cut(s) 646, 676, 739
BstX2I RGATCY 1 cut(s) 13
BstXI CCANNNNNNTGG 1 cut(s) 985
BstYI RGATCY 1 cut(s) 13
BsuRI GGCC 7 cut(s) 162, 308, 455, 476, 697, 774, 977
BtgI CCRYGG 1 cut(s) 349
BtsCI GGATG 2 cut(s) 34, 130
BtsI GCAGTG 1 cut(s) 287
BtsIMutI CAGTG 1 cut(s) 287
Cac8I GCNNGC 1 cut(s) 411
Cfr10I RCCGGY 1 cut(s) 697
Cfr13I GGNCC 2 cut(s) 475, 895
CseI GACGC 2 cut(s) 600, 861
Csp6I GTAC 1 cut(s) 209
CviAII CATG 5 cut(s) 151, 251, 410, 431, 935
CviQI GTAC 1 cut(s) 209
DdeI CTNAG 4 cut(s) 318, 615, 769, 1002
DpnI GATC 3 cut(s) 15, 67, 762
DpnII GATC 3 cut(s) 13, 65, 760
DraI TTTAAA 2 cut(s) 604, 655
EaeI YGGCCR 2 cut(s) 160, 306
Ecl136II GAGCTC 1 cut(s) 950
Eco24I GRGCYC 1 cut(s) 952
Eco47I GGWCC 1 cut(s) 895
Eco53kI GAGCTC 1 cut(s) 950
Eco88I CYCGRG 1 cut(s) 778
EcoICRI GAGCTC 1 cut(s) 950
EcoRI GAATTC 1 cut(s) 168
EcoRII CCWGG 1 cut(s) 523
EcoT38I GRGCYC 1 cut(s) 952
Esp3I CGTCTC 1 cut(s) 618
FaeI CATG 5 cut(s) 154, 254, 413, 434, 938
FaiI YATR 9 cut(s) 102, 152, 189, 252, 411, 432, 469, 705, 936
FaqI GGGAC 2 cut(s) 76, 411
FatI CATG 5 cut(s) 150, 250, 409, 430, 934
FauI CCCGC 1 cut(s) 782
FbaI TGATCA 1 cut(s) 760
Fnu4HI GCNGC 4 cut(s) 660, 690, 753, 775
FokI GGATG 2 cut(s) 41, 137
FriOI GRGCYC 1 cut(s) 952
Fsp4HI GCNGC 4 cut(s) 660, 690, 753, 775
FspBI CTAG 4 cut(s) 201, 438, 693, 884
GluI GCNGC 4 cut(s) 660, 690, 753, 775
HaeIII GGCC 7 cut(s) 162, 308, 455, 476, 697, 774, 977
HapII CCGG 1 cut(s) 698
HgaI GACGC 2 cut(s) 600, 861
Hin1I GRCGYC 1 cut(s) 970
Hin1II CATG 5 cut(s) 154, 254, 413, 434, 938
HinfI GANTC 5 cut(s) 226, 258, 263, 400, 520
HpaII CCGG 1 cut(s) 698
HphI GGTGA 2 cut(s) 235, 608
Hpy166II GTNNAC 1 cut(s) 711
Hpy188I TCNGA 3 cut(s) 268, 618, 895
Hpy188III TCNNGA 6 cut(s) 11, 230, 344, 419, 449, 864
Hpy8I GTNNAC 1 cut(s) 711
Hpy99I CGWCG 1 cut(s) 520
HpyAV CCTTC 2 cut(s) 56, 265
HpyCH4III ACNGT 1 cut(s) 350
HpyCH4IV ACGT 1 cut(s) 970
HpyCH4V TGCA 3 cut(s) 409, 491, 934
HpyF10VI GCNNNNNNNGC 4 cut(s) 110, 314, 774, 947
HpyF3I CTNAG 4 cut(s) 318, 615, 769, 1002
HpySE526I ACGT 1 cut(s) 970
Hsp92I GRCGYC 1 cut(s) 970
Hsp92II CATG 5 cut(s) 154, 254, 413, 434, 938
Ksp22I TGATCA 1 cut(s) 760
Kzo9I GATC 3 cut(s) 13, 65, 760
LmnI GCTCC 1 cut(s) 947
Lsp1109I GCAGC 3 cut(s) 646, 676, 739
LweI GCATC 3 cut(s) 226, 280, 739
MaeI CTAG 4 cut(s) 201, 438, 693, 884
MaeII ACGT 1 cut(s) 970
MaeIII GTNAC 1 cut(s) 344
MalI GATC 3 cut(s) 15, 67, 762
MbiI CCGCTC 1 cut(s) 777
MboI GATC 3 cut(s) 13, 65, 760
MboII GAAGA 8 cut(s) 8, 99, 164, 245, 401, 504, 659, 660
MfeI CAATTG 1 cut(s) 78
MflI RGATCY 1 cut(s) 13
MhlI GDGCHC 1 cut(s) 952
MluCI AATT 4 cut(s) 78, 97, 168, 650
MlyI GAGTC 3 cut(s) 235, 394, 529
MmeI TCCRAC 3 cut(s) 624, 873, 946
MseI TTAA 4 cut(s) 296, 603, 654, 735
MspI CCGG 1 cut(s) 698
MspR9I CCNGG 1 cut(s) 525
MunI CAATTG 1 cut(s) 78
MvaI CCWGG 1 cut(s) 525
MwoI GCNNNNNNNGC 4 cut(s) 110, 314, 774, 947
NdeII GATC 3 cut(s) 13, 65, 760
NlaIII CATG 5 cut(s) 154, 254, 413, 434, 938
NlaIV GGNNCC 2 cut(s) 327, 477
NmuCI GTSAC 1 cut(s) 344
NspI RCATGY 1 cut(s) 413
NspV TTCGAA 1 cut(s) 261
PaeI GCATGC 1 cut(s) 413
PfeI GAWTC 2 cut(s) 258, 263
PkrI GCNGC 4 cut(s) 661, 691, 754, 776
PleI GAGTC 3 cut(s) 234, 394, 528
PpsI GAGTC 3 cut(s) 234, 394, 528
Psp124BI GAGCTC 1 cut(s) 952
Psp6I CCWGG 1 cut(s) 523
PspGI CCWGG 1 cut(s) 523
PspN4I GGNNCC 2 cut(s) 327, 477
PspPI GGNCC 2 cut(s) 475, 895
PsuI RGATCY 1 cut(s) 13
RsaI GTAC 1 cut(s) 210
RsaNI GTAC 1 cut(s) 209
SacI GAGCTC 1 cut(s) 952
SaqAI TTAA 4 cut(s) 296, 603, 654, 735
SatI GCNGC 4 cut(s) 660, 690, 753, 775
Sau3AI GATC 3 cut(s) 13, 65, 760
Sau96I GGNCC 2 cut(s) 475, 895
SchI GAGTC 3 cut(s) 235, 394, 529
ScrFI CCNGG 1 cut(s) 525
SduI GDGCHC 1 cut(s) 952
SfaNI GCATC 3 cut(s) 226, 280, 739
SfuI TTCGAA 1 cut(s) 261
SinI GGWCC 1 cut(s) 895
SmlI CTYRAG 1 cut(s) 959
SmoI CTYRAG 1 cut(s) 959
SpeI ACTAGT 1 cut(s) 437
SphI GCATGC 1 cut(s) 413
Sse9I AATT 4 cut(s) 78, 97, 168, 650
SsiI CCGC 3 cut(s) 413, 775, 789
SspMI CTAG 4 cut(s) 201, 438, 693, 884
SstI GAGCTC 1 cut(s) 952
StyD4I CCNGG 1 cut(s) 523
TaaI ACNGT 1 cut(s) 350
TaiI ACGT 1 cut(s) 973
TaqI TCGA 6 cut(s) 60, 261, 363, 418, 518, 900
TasI AATT 4 cut(s) 78, 97, 168, 650
TauI GCSGC 1 cut(s) 777
TfiI GAWTC 2 cut(s) 258, 263
Tru1I TTAA 4 cut(s) 296, 603, 654, 735
Tru9I TTAA 4 cut(s) 296, 603, 654, 735
TscAI CASTG 1 cut(s) 287
TseFI GTSAC 1 cut(s) 344
TseI GCWGC 3 cut(s) 659, 689, 752
Tsp45I GTSAC 1 cut(s) 344
TspDTI ATGAA 4 cut(s) 139, 141, 402, 692
TspRI CASTG 1 cut(s) 287
VpaK11BI GGWCC 1 cut(s) 895
XapI RAATTY 2 cut(s) 168, 650
XceI RCATGY 1 cut(s) 413
XspI CTAG 4 cut(s) 201, 438, 693, 884
ZraI GACGTC 1 cut(s) 971
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.