FvH4_2g12622

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000591
Physical Location & Seq
Reverse (-)
11093695 .. 11096478
2784 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g12622.t1

Sequence Viewer

Length: 816 bp
ATGACCGGCATTTCTCATGGCGAATCTACTGGTCCTTGGTTAGGGGAGAAAGCTGCCTCTAATATTCTTCCCACAAGAAGTAGGCTTAGTGAACGGGGTGTATATATTGACACCCAATGCCCTTTCTATGAGGAGGAGGTGGAGTCACCTATTCATACTCTGAGAGATTGTTCCCATGCATCTGAGTGCCTTCAACTAGCTCAAGTTCCATCGCTGCCGAACACTACCTCGGTATATGACTGGTTAGTTTCAGCTTTATCTGTTCCTACCATATTTCTAATTTTGCTTATGATTCTATGGACAATATGGCGTAATAGGAATCATAAGGTTTGGGAGGGTGAGGTTAAACATGCCTCTAAGATAGTGTCGCTAGCTTTGGGTTGGTGGGAGGACTATAAAAAGGCTAGAAGCTCTTTGAATGCACCAAGGATTATTCTTCGGTCTAGATGGACGAAACCCTCAGTTGAGTTTGTAAAACTTAATGTTGATGCTGCCTTCGATCCAAATTCTGGAAGAACATGGTTAGGAGGAGTTTTCCGTGATCATGAAGGGTTTTGTTTGGGAGCTTTCACCAAGTTCATTGTGTCTGGCAGCTCTCTTCAACATAATGAATTCCTTGCAGTTCTTGAAGGTGTTAGATGGGCGCAAGTACATCATTTGTTGCCACTAGTTGTGGAAACAGATTGTCAAGTACTAGTGAATGTTGTTCAATCAGGTTCATTGGATCACTCTAGCATAGATTTTCGTCTATCTGATTTAAGAGAGAGTCTTCGCCTCGCTTCTAATGCAAGATTGATTTTTGTTAAAAGAGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

272

Amino Acids

30.55

Weight (kDa)

7.15

Isoelectric Point (pI)

49.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 161 - 270 1.6e-14 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03566
fragaria_vesca FvH4_2g12622 FvH4_2g12642 FvH4_2g13902 FvH4_3g05011 FvH4_3g18961 FvH4_3g31940 FvH4_4g08421 FvH4_4g21351 FvH4_5g28071 FvH4_5g34871 FvH4_6g21812 FvH4_6g30441 FvH4_6g33631
rosa_chinensis RchiOBHm_Chr1g0320221 RchiOBHm_Chr1g0356521 RchiOBHm_Chr4g0389021 RchiOBHm_Chr5g0020651 RchiOBHm_Chr5g0027511
rosa_laevigata RLG00000002966 RLG00000019504
rosa_multiflora Rmu_co7963640.1_g000001 Rmu_co7988458.1_g000001 Rmu_co8109512.1_g000001 Rmu_co8136160.1_g000001 Rmu_co8253655.1_g000001 Rmu_sc0000388.1_g000040 Rmu_sc0000540.1_g000056 Rmu_sc0000574.1_g000013 Rmu_sc0000623.1_g000001 Rmu_sc0000795.1_g000005 Rmu_sc0000795.1_g000006 Rmu_sc0001063.1_g000001 Rmu_sc0002116.1_g000001 Rmu_sc0002192.1_g000012 Rmu_sc0002640.1_g000015 Rmu_sc0003337.1_g000039 Rmu_sc0004298.1_g000003 Rmu_sc0004771.1_g000001 Rmu_sc0006119.1_g000010 Rmu_sc0006633.1_g000007 Rmu_sc0007025.1_g000016 Rmu_sc0007221.1_g000002 Rmu_sc0007222.1_g000002 Rmu_sc0007806.1_g000016 Rmu_sc0008241.1_g000018 Rmu_sc0008348.1_g000001 Rmu_sc0009034.1_g000001 Rmu_sc0009955.1_g000004 Rmu_sc0018325.1_g000009 Rmu_sc0028328.1_g000002 Rmu_sc0030178.1_g000001 Rmu_sc0034381.1_g000001 Rmu_sc0041085.1_g000001 Rmu_sc0041085.1_g000002
rosa_roxburghii Rroxscaffold_3G00233230 Rroxscaffold_7G00193120 Rroxscaffold_7G00194820
rosa_rugosa Rorug01G0017000 Rorug01G0036400 Rorug01G0062600 Rorug01G0118500 Rorug02G0351500 Rorug02G0497600 Rorug03G0233200 Rorug03G0279500 Rorug03G0347600 Rorug04G0077100 Rorug04G0077200 Rorug04G0210900 Rorug05G0206900 Rorug07G0202900 Rorug07G0334000
rosa_samantha Rh2CG195700 Rh4DG035800
rosa_wichuraiana Rw0G005080 Rw0G013600 Rw2G020080 Rw2G024380 Rw5G002230 Rw5G036790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 509
AclWI GGATC 2 cut(s) 494, 732
AcsI RAATTY 2 cut(s) 505, 611
AfaI GTAC 2 cut(s) 651, 693
AfiI CCNNNNNNNGG 2 cut(s) 41, 509
AgsI TTSAA 5 cut(s) 194, 418, 602, 629, 710
AhlI ACTAGT 2 cut(s) 667, 694
AluBI AGCT 7 cut(s) 53, 200, 254, 374, 411, 566, 594
AluI AGCT 7 cut(s) 53, 200, 254, 374, 411, 566, 594
AlwI GGATC 2 cut(s) 494, 732
ApeKI GCWGC 4 cut(s) 53, 214, 491, 591
ApoI RAATTY 2 cut(s) 505, 611
AspLEI GCGC 1 cut(s) 646
AspS9I GGNCC 1 cut(s) 32
AsuHPI GGTGA 3 cut(s) 138, 350, 562
AsuNHI GCTAGC 1 cut(s) 370
AvaII GGWCC 1 cut(s) 32
BbsI GAAGAC 1 cut(s) 761
BbvI GCAGC 4 cut(s) 40, 201, 478, 603
BccI CCATC 3 cut(s) 217, 441, 633
BclI TGATCA 1 cut(s) 541
BcuI ACTAGT 2 cut(s) 667, 694
BfaI CTAG 7 cut(s) 197, 371, 405, 444, 668, 695, 732
BisI GCNGC 4 cut(s) 54, 215, 492, 592
BlsI GCNGC 4 cut(s) 55, 216, 493, 593
BmcAI AGTACT 1 cut(s) 693
Bme18I GGWCC 1 cut(s) 32
BmgT120I GGNCC 1 cut(s) 32
BmsI GCATC 2 cut(s) 188, 478
BmtI GCTAGC 1 cut(s) 374
BpiI GAAGAC 1 cut(s) 761
BpuEI CTTGAG 1 cut(s) 186
BsaJI CCNNGG 3 cut(s) 35, 228, 425
BsaXI ACNNNNNCTCC 2 cut(s) 128, 158
Bsc4I CCNNNNNNNGG 2 cut(s) 41, 509
Bse118I RCCGGY 1 cut(s) 5
Bse1I ACTGG 2 cut(s) 34, 245
BseDI CCNNGG 3 cut(s) 35, 228, 425
BseLI CCNNNNNNNGG 2 cut(s) 41, 509
BseMII CTCAG 3 cut(s) 152, 174, 474
BseNI ACTGG 2 cut(s) 34, 245
BseRI GAGGAG 3 cut(s) 146, 149, 543
BseXI GCAGC 4 cut(s) 40, 201, 478, 603
BsiSI CCGG 1 cut(s) 6
BslI CCNNNNNNNGG 2 cut(s) 41, 509
BsmI GAATGC 1 cut(s) 424
Bsp143I GATC 3 cut(s) 499, 541, 724
BspCNI CTCAG 3 cut(s) 153, 175, 473
BspHI TCATGA 1 cut(s) 544
BspOI GCTAGC 1 cut(s) 374
BspPI GGATC 2 cut(s) 494, 732
BsrFI RCCGGY 1 cut(s) 5
BsrI ACTGG 2 cut(s) 34, 245
BssAI RCCGGY 1 cut(s) 5
BssECI CCNNGG 3 cut(s) 35, 228, 425
BssMI GATC 3 cut(s) 499, 541, 724
BssT1I CCWWGG 2 cut(s) 35, 425
Bst6I CTCTTC 1 cut(s) 603
BstC8I GCNNGC 1 cut(s) 372
BstDEI CTNAG 5 cut(s) 86, 161, 183, 357, 460
BstENI CCTNNNNNAGG 1 cut(s) 39
BstHHI GCGC 1 cut(s) 646
BstKTI GATC 3 cut(s) 502, 544, 727
BstMBI GATC 3 cut(s) 499, 541, 724
BstMWI GCNNNNNNNGC 1 cut(s) 785
BstNSI RCATGY 1 cut(s) 353
BstV1I GCAGC 4 cut(s) 40, 201, 478, 603
BstV2I GAAGAC 1 cut(s) 761
BtgZI GCGATG 1 cut(s) 195
Cac8I GCNNGC 1 cut(s) 372
CciI TCATGA 1 cut(s) 544
CfoI GCGC 1 cut(s) 646
Cfr10I RCCGGY 1 cut(s) 5
Cfr13I GGNCC 1 cut(s) 32
Csp6I GTAC 2 cut(s) 650, 692
CviAII CATG 5 cut(s) 17, 176, 350, 519, 545
CviQI GTAC 2 cut(s) 650, 692
DdeI CTNAG 5 cut(s) 86, 161, 183, 357, 460
DpnI GATC 3 cut(s) 501, 543, 726
DpnII GATC 3 cut(s) 499, 541, 724
Eam1104I CTCTTC 1 cut(s) 603
EarI CTCTTC 1 cut(s) 603
Eco130I CCWWGG 2 cut(s) 35, 425
Eco47I GGWCC 1 cut(s) 32
EcoNI CCTNNNNNAGG 1 cut(s) 39
EcoRI GAATTC 1 cut(s) 611
EcoT14I CCWWGG 2 cut(s) 35, 425
EcoT22I ATGCAT 1 cut(s) 181
ErhI CCWWGG 2 cut(s) 35, 425
FaeI CATG 5 cut(s) 20, 179, 353, 522, 548
FatI CATG 5 cut(s) 16, 175, 349, 518, 544
FbaI TGATCA 1 cut(s) 541
Fnu4HI GCNGC 4 cut(s) 54, 215, 492, 592
Fsp4HI GCNGC 4 cut(s) 54, 215, 492, 592
FspBI CTAG 7 cut(s) 197, 371, 405, 444, 668, 695, 732
GlaI GCGC 1 cut(s) 645
GluI GCNGC 4 cut(s) 54, 215, 492, 592
HapII CCGG 1 cut(s) 6
HhaI GCGC 1 cut(s) 646
Hin1II CATG 5 cut(s) 20, 179, 353, 522, 548
Hin6I GCGC 1 cut(s) 644
HinP1I GCGC 1 cut(s) 644
HinfI GANTC 5 cut(s) 23, 143, 292, 319, 766
HpaII CCGG 1 cut(s) 6
HphI GGTGA 3 cut(s) 138, 350, 562
Hpy166II GTNNAC 1 cut(s) 92
Hpy188I TCNGA 3 cut(s) 162, 184, 754
Hpy188III TCNNGA 4 cut(s) 444, 510, 545, 626
Hpy8I GTNNAC 1 cut(s) 92
HpyAV CCTTC 4 cut(s) 200, 505, 542, 623
HpyCH4V TGCA 4 cut(s) 179, 422, 620, 788
HpyF10VI GCNNNNNNNGC 1 cut(s) 785
HpyF3I CTNAG 5 cut(s) 86, 161, 183, 357, 460
Hsp92II CATG 5 cut(s) 20, 179, 353, 522, 548
HspAI GCGC 1 cut(s) 644
Ksp22I TGATCA 1 cut(s) 541
Kzo9I GATC 3 cut(s) 499, 541, 724
LmnI GCTCC 1 cut(s) 563
LpnPI CCDG 6 cut(s) 15, 19, 226, 495, 573, 699
Lsp1109I GCAGC 4 cut(s) 40, 201, 478, 603
LweI GCATC 2 cut(s) 188, 478
MaeI CTAG 7 cut(s) 197, 371, 405, 444, 668, 695, 732
MaeIII GTNAC 1 cut(s) 144
MalI GATC 3 cut(s) 501, 543, 726
MboI GATC 3 cut(s) 499, 541, 724
MboII GAAGA 5 cut(s) 59, 428, 525, 590, 761
MluCI AATT 3 cut(s) 279, 505, 611
MlyI GAGTC 2 cut(s) 152, 775
Mph1103I ATGCAT 1 cut(s) 181
MseI TTAA 4 cut(s) 345, 480, 758, 804
MslI CAYNNNNRTG 1 cut(s) 184
MspI CCGG 1 cut(s) 6
Mva1269I GAATGC 1 cut(s) 424
MwoI GCNNNNNNNGC 1 cut(s) 785
NdeII GATC 3 cut(s) 499, 541, 724
NheI GCTAGC 1 cut(s) 370
NlaIII CATG 5 cut(s) 20, 179, 353, 522, 548
NmuCI GTSAC 1 cut(s) 144
NsiI ATGCAT 1 cut(s) 181
NspI RCATGY 1 cut(s) 353
PagI TCATGA 1 cut(s) 544
PctI GAATGC 1 cut(s) 424
PfeI GAWTC 3 cut(s) 23, 292, 319
PflMI CCANNNNNTGG 1 cut(s) 509
PkrI GCNGC 4 cut(s) 55, 216, 493, 593
PleI GAGTC 2 cut(s) 151, 774
PpsI GAGTC 2 cut(s) 151, 774
PspPI GGNCC 1 cut(s) 32
RsaI GTAC 2 cut(s) 651, 693
RsaNI GTAC 2 cut(s) 650, 692
RseI CAYNNNNRTG 1 cut(s) 184
SaqAI TTAA 4 cut(s) 345, 480, 758, 804
SatI GCNGC 4 cut(s) 54, 215, 492, 592
Sau3AI GATC 3 cut(s) 499, 541, 724
Sau96I GGNCC 1 cut(s) 32
ScaI AGTACT 1 cut(s) 693
SchI GAGTC 2 cut(s) 152, 775
SfaNI GCATC 2 cut(s) 188, 478
SinI GGWCC 1 cut(s) 32
SmiMI CAYNNNNRTG 1 cut(s) 184
SmlI CTYRAG 1 cut(s) 201
SmoI CTYRAG 1 cut(s) 201
SpeI ACTAGT 2 cut(s) 667, 694
Sse9I AATT 3 cut(s) 279, 505, 611
SspI AATATT 1 cut(s) 64
SspMI CTAG 7 cut(s) 197, 371, 405, 444, 668, 695, 732
StyI CCWWGG 2 cut(s) 35, 425
TaqI TCGA 1 cut(s) 498
TaqII GACCGA 1 cut(s) 429
TasI AATT 3 cut(s) 279, 505, 611
TatI WGTACW 2 cut(s) 649, 691
TfiI GAWTC 3 cut(s) 23, 292, 319
Tru1I TTAA 4 cut(s) 345, 480, 758, 804
Tru9I TTAA 4 cut(s) 345, 480, 758, 804
TseFI GTSAC 1 cut(s) 144
TseI GCWGC 4 cut(s) 53, 214, 491, 591
Tsp45I GTSAC 1 cut(s) 144
TspDTI ATGAA 5 cut(s) 143, 561, 568, 624, 708
TspGWI ACGGA 1 cut(s) 527
Van91I CCANNNNNTGG 1 cut(s) 509
VpaK11BI GGWCC 1 cut(s) 32
XagI CCTNNNNNAGG 1 cut(s) 39
XapI RAATTY 2 cut(s) 505, 611
XbaI TCTAGA 1 cut(s) 443
XceI RCATGY 1 cut(s) 353
XspI CTAG 7 cut(s) 197, 371, 405, 444, 668, 695, 732
ZrmI AGTACT 1 cut(s) 693
Zsp2I ATGCAT 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.