Rmu_sc0000574.1_g000013

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000574.1
OG0000591
Physical Location & Seq
Reverse (-)
33942 .. 34706
765 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000574.1_g000013.1.cds

Sequence Viewer

Length: 765 bp
atgcattggaggacttgggatgagctttgtaaacctaaaagtttgggaggtatgggctttcgacatctttttgctttcaatttggcgatgttagctaagcaagggtggaggctacttcaaagtcctgattctttgattggccgcttgttcaaagctctatattttccccatagtactttttgggaagctaatctaggcacacagccttcatacgcttggcggagtattttacagggtcgtgacattcttaaagcgggtattaaacgacatgttggtaatggtttcactactaatatctggctggacccgtggctaatgggagaggatttgagtgctttcttctcggacagagtgactactgtagctgatcttcttagctccccgggtaagtggaatgccaccctcttatcagaactgtttcctcgtcatattgttcagaaaatcctttctattccccttagtccccggaatcatgaggatacgtggatttggggtggtgataaaagaggtcggttcacggttaaatcagcctatcatattgttcgggatcggattcttgaggattcatccacacctaacctaagtgttgcactttggcgtcagctgtggaaagcgccagtcccaggtagtgtaaagatctgtgcatggaaagcagcctccaatgttcttcctactcagagcaggattcgtgatcgtggtattgatttagatacccaatgccctctctgtaatgaggaaatagagactcctttgcatacggtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

254

Amino Acids

29.0

Weight (kDa)

9.51

Isoelectric Point (pI)

49.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03566
fragaria_vesca FvH4_2g12622 FvH4_2g12642 FvH4_2g13902 FvH4_3g05011 FvH4_3g18961 FvH4_3g31940 FvH4_4g08421 FvH4_4g21351 FvH4_5g28071 FvH4_5g34871 FvH4_6g21812 FvH4_6g30441 FvH4_6g33631
rosa_chinensis RchiOBHm_Chr1g0320221 RchiOBHm_Chr1g0356521 RchiOBHm_Chr4g0389021 RchiOBHm_Chr5g0020651 RchiOBHm_Chr5g0027511
rosa_laevigata RLG00000002966 RLG00000019504
rosa_multiflora Rmu_co7963640.1_g000001 Rmu_co7988458.1_g000001 Rmu_co8109512.1_g000001 Rmu_co8136160.1_g000001 Rmu_co8253655.1_g000001 Rmu_sc0000388.1_g000040 Rmu_sc0000540.1_g000056 Rmu_sc0000574.1_g000013 Rmu_sc0000623.1_g000001 Rmu_sc0000795.1_g000005 Rmu_sc0000795.1_g000006 Rmu_sc0001063.1_g000001 Rmu_sc0002116.1_g000001 Rmu_sc0002192.1_g000012 Rmu_sc0002640.1_g000015 Rmu_sc0003337.1_g000039 Rmu_sc0004298.1_g000003 Rmu_sc0004771.1_g000001 Rmu_sc0006119.1_g000010 Rmu_sc0006633.1_g000007 Rmu_sc0007025.1_g000016 Rmu_sc0007221.1_g000002 Rmu_sc0007222.1_g000002 Rmu_sc0007806.1_g000016 Rmu_sc0008241.1_g000018 Rmu_sc0008348.1_g000001 Rmu_sc0009034.1_g000001 Rmu_sc0009955.1_g000004 Rmu_sc0018325.1_g000009 Rmu_sc0028328.1_g000002 Rmu_sc0030178.1_g000001 Rmu_sc0034381.1_g000001 Rmu_sc0041085.1_g000001 Rmu_sc0041085.1_g000002
rosa_roxburghii Rroxscaffold_3G00233230 Rroxscaffold_7G00193120 Rroxscaffold_7G00194820
rosa_rugosa Rorug01G0017000 Rorug01G0036400 Rorug01G0062600 Rorug01G0118500 Rorug02G0351500 Rorug02G0497600 Rorug03G0233200 Rorug03G0279500 Rorug03G0347600 Rorug04G0077100 Rorug04G0077200 Rorug04G0210900 Rorug05G0206900 Rorug07G0202900 Rorug07G0334000
rosa_samantha Rh2CG195700 Rh4DG035800
rosa_wichuraiana Rw0G005080 Rw0G013600 Rw2G020080 Rw2G024380 Rw5G002230 Rw5G036790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 142, 220, 254
AclWI GGATC 1 cut(s) 555
AcoI YGGCCR 1 cut(s) 139
AcyI GRCGYC 1 cut(s) 598
AfaI GTAC 1 cut(s) 175
AfiI CCNNNNNNNGG 1 cut(s) 623
AflIII ACRYGT 1 cut(s) 268
AgsI TTSAA 3 cut(s) 79, 119, 151
AjnI CCWGG 1 cut(s) 622
AluBI AGCT 7 cut(s) 25, 95, 155, 188, 365, 378, 604
AluI AGCT 7 cut(s) 25, 95, 155, 188, 365, 378, 604
Alw26I GTCTC 1 cut(s) 737
AlwI GGATC 1 cut(s) 555
Ama87I CYCGRG 1 cut(s) 382
AoxI GGCC 1 cut(s) 139
ApeKI GCWGC 1 cut(s) 653
Asp700I GAANNNNTTC 1 cut(s) 417
AspLEI GCGC 1 cut(s) 616
AspS9I GGNCC 1 cut(s) 304
AsuC2I CCSGG 3 cut(s) 383, 384, 466
AsuHPI GGTGA 1 cut(s) 509
AvaI CYCGRG 1 cut(s) 382
AvaII GGWCC 1 cut(s) 304
BarI GAAGNNNNNNTAC 2 cut(s) 354, 386
BbvI GCAGC 1 cut(s) 665
BciT130I CCWGG 1 cut(s) 624
BciVI GTATCC 1 cut(s) 472
BcnI CCSGG 3 cut(s) 383, 384, 466
BcoDI GTCTC 1 cut(s) 737
BfaI CTAG 1 cut(s) 194
BfmI CTRYAG 1 cut(s) 360
BfoI RGCGCY 1 cut(s) 617
BfuI GTATCC 1 cut(s) 472
BglII AGATCT 1 cut(s) 636
BisI GCNGC 2 cut(s) 142, 654
BlpI GCTNAGC 1 cut(s) 96
BlsI GCNGC 2 cut(s) 143, 655
BmcAI AGTACT 1 cut(s) 175
Bme1390I CCNGG 4 cut(s) 383, 384, 466, 624
Bme18I GGWCC 1 cut(s) 304
BmeT110I CYCGRG 1 cut(s) 382
BmgT120I GGNCC 1 cut(s) 304
BmiI GGNNCC 1 cut(s) 306
BmrFI CCNGG 4 cut(s) 383, 384, 466, 624
Bpu1102I GCTNAGC 1 cut(s) 96
BpuEI CTTGAG 1 cut(s) 578
BpuMI CCSGG 3 cut(s) 383, 384, 466
BsaAI YACGTR 1 cut(s) 483
BsaHI GRCGYC 1 cut(s) 598
BsaJI CCNNGG 5 cut(s) 308, 381, 382, 464, 622
Bsc4I CCNNNNNNNGG 1 cut(s) 623
Bse1I ACTGG 1 cut(s) 617
BseBI CCWGG 1 cut(s) 624
BseDI CCNNGG 5 cut(s) 308, 381, 382, 464, 622
BseGI GGATG 2 cut(s) 25, 566
BseLI CCNNNNNNNGG 1 cut(s) 623
BseMII CTCAG 1 cut(s) 689
BseNI ACTGG 1 cut(s) 617
BseXI GCAGC 1 cut(s) 665
BshFI GGCC 1 cut(s) 141
BsiHKCI CYCGRG 1 cut(s) 382
BsiSI CCGG 2 cut(s) 383, 466
BslFI GGGAC 2 cut(s) 447, 605
BslI CCNNNNNNNGG 1 cut(s) 623
BsmAI GTCTC 1 cut(s) 737
BsmFI GGGAC 2 cut(s) 447, 605
BsmI GAATGC 1 cut(s) 400
BsnI GGCC 1 cut(s) 141
BsoBI CYCGRG 1 cut(s) 382
Bsp143I GATC 4 cut(s) 367, 547, 636, 691
Bsp1720I GCTNAGC 1 cut(s) 96
BspACI CCGC 3 cut(s) 142, 220, 254
BspANI GGCC 1 cut(s) 141
BspCNI CTCAG 1 cut(s) 688
BspHI TCATGA 1 cut(s) 472
BspLI GGNNCC 1 cut(s) 306
BspPI GGATC 1 cut(s) 555
BsrI ACTGG 1 cut(s) 617
BssECI CCNNGG 5 cut(s) 308, 381, 382, 464, 622
BssMI GATC 4 cut(s) 367, 547, 636, 691
BssNI GRCGYC 1 cut(s) 598
Bst2UI CCWGG 1 cut(s) 624
Bst4CI ACNGT 4 cut(s) 361, 417, 520, 760
BstACI GRCGYC 1 cut(s) 598
BstBAI YACGTR 1 cut(s) 483
BstDEI CTNAG 5 cut(s) 96, 374, 458, 581, 675
BstDSI CCRYGG 1 cut(s) 308
BstF5I GGATG 2 cut(s) 25, 566
BstH2I RGCGCY 1 cut(s) 617
BstHHI GCGC 1 cut(s) 616
BstKTI GATC 4 cut(s) 370, 550, 639, 694
BstMAI GTCTC 1 cut(s) 737
BstMBI GATC 4 cut(s) 367, 547, 636, 691
BstMWI GCNNNNNNNGC 2 cut(s) 92, 650
BstNI CCWGG 1 cut(s) 624
BstNSI RCATGY 1 cut(s) 272
BstSCI CCNGG 4 cut(s) 381, 382, 464, 622
BstSFI CTRYAG 1 cut(s) 360
BstV1I GCAGC 1 cut(s) 665
BstX2I RGATCY 1 cut(s) 636
BstYI RGATCY 1 cut(s) 636
BsuI GTATCC 1 cut(s) 472
BsuRI GGCC 1 cut(s) 141
BtgI CCRYGG 1 cut(s) 308
BtgZI GCGATG 1 cut(s) 101
BtsCI GGATG 2 cut(s) 25, 566
CciI TCATGA 1 cut(s) 472
CfoI GCGC 1 cut(s) 616
Cfr13I GGNCC 1 cut(s) 304
Cfr9I CCCGGG 1 cut(s) 382
CseI GACGC 1 cut(s) 587
Csp6I GTAC 1 cut(s) 174
CviAII CATG 3 cut(s) 269, 473, 645
CviQI GTAC 1 cut(s) 174
DdeI CTNAG 5 cut(s) 96, 374, 458, 581, 675
DpnI GATC 4 cut(s) 369, 549, 638, 693
DpnII GATC 4 cut(s) 367, 547, 636, 691
EaeI YGGCCR 1 cut(s) 139
EciI GGCGGA 1 cut(s) 235
Eco47I GGWCC 1 cut(s) 304
Eco88I CYCGRG 1 cut(s) 382
EcoRII CCWGG 1 cut(s) 622
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 3 cut(s) 272, 476, 648
FaqI GGGAC 2 cut(s) 447, 605
FatI CATG 3 cut(s) 268, 472, 644
FauI CCCGC 1 cut(s) 247
Fnu4HI GCNGC 2 cut(s) 142, 654
FokI GGATG 2 cut(s) 32, 553
Fsp4HI GCNGC 2 cut(s) 142, 654
FspBI CTAG 1 cut(s) 194
GlaI GCGC 1 cut(s) 615
GluI GCNGC 2 cut(s) 142, 654
HaeII RGCGCY 1 cut(s) 617
HaeIII GGCC 1 cut(s) 141
HapII CCGG 2 cut(s) 383, 466
HgaI GACGC 1 cut(s) 587
HhaI GCGC 1 cut(s) 616
Hin1I GRCGYC 1 cut(s) 598
Hin1II CATG 3 cut(s) 272, 476, 648
Hin6I GCGC 1 cut(s) 614
HinP1I GCGC 1 cut(s) 614
HinfI GANTC 6 cut(s) 128, 469, 553, 563, 685, 745
HpaII CCGG 2 cut(s) 383, 466
HphI GGTGA 1 cut(s) 509
Hpy166II GTNNAC 2 cut(s) 32, 516
Hpy188I TCNGA 5 cut(s) 346, 412, 438, 552, 678
Hpy188III TCNNGA 6 cut(s) 125, 239, 473, 545, 557, 689
Hpy8I GTNNAC 2 cut(s) 32, 516
HpyAV CCTTC 1 cut(s) 216
HpyCH4III ACNGT 4 cut(s) 361, 417, 520, 760
HpyCH4IV ACGT 1 cut(s) 482
HpyCH4V TGCA 4 cut(s) 4, 590, 644, 754
HpyF10VI GCNNNNNNNGC 2 cut(s) 92, 650
HpyF3I CTNAG 5 cut(s) 96, 374, 458, 581, 675
HpySE526I ACGT 1 cut(s) 482
Hsp92I GRCGYC 1 cut(s) 598
Hsp92II CATG 3 cut(s) 272, 476, 648
HspAI GCGC 1 cut(s) 614
Kzo9I GATC 4 cut(s) 367, 547, 636, 691
LmnI GCTCC 1 cut(s) 383
Lsp1109I GCAGC 1 cut(s) 665
MaeI CTAG 1 cut(s) 194
MaeII ACGT 1 cut(s) 482
MaeIII GTNAC 2 cut(s) 239, 352
MalI GATC 4 cut(s) 369, 549, 638, 693
MboI GATC 4 cut(s) 367, 547, 636, 691
MboII GAAGA 3 cut(s) 331, 362, 659
MflI RGATCY 1 cut(s) 636
MluCI AATT 1 cut(s) 79
MlyI GAGTC 1 cut(s) 739
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 417
MseI TTAA 3 cut(s) 249, 261, 522
MspA1I CMGCKG 1 cut(s) 604
MspI CCGG 2 cut(s) 383, 466
MspR9I CCNGG 4 cut(s) 383, 384, 466, 624
Mva1269I GAATGC 1 cut(s) 400
MvaI CCWGG 1 cut(s) 624
MwoI GCNNNNNNNGC 2 cut(s) 92, 650
NciI CCSGG 3 cut(s) 383, 384, 466
NdeII GATC 4 cut(s) 367, 547, 636, 691
NlaIII CATG 3 cut(s) 272, 476, 648
NlaIV GGNNCC 1 cut(s) 306
NmuCI GTSAC 2 cut(s) 239, 352
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 272
PagI TCATGA 1 cut(s) 472
PciI ACATGT 1 cut(s) 268
PctI GAATGC 1 cut(s) 400
PdmI GAANNNNTTC 1 cut(s) 417
PfeI GAWTC 5 cut(s) 128, 469, 553, 563, 685
PkrI GCNGC 2 cut(s) 143, 655
PleI GAGTC 1 cut(s) 739
PpsI GAGTC 1 cut(s) 739
Ppu21I YACGTR 1 cut(s) 483
PscI ACATGT 1 cut(s) 268
Psp6I CCWGG 1 cut(s) 622
PspGI CCWGG 1 cut(s) 622
PspN4I GGNNCC 1 cut(s) 306
PspPI GGNCC 1 cut(s) 304
PsuI RGATCY 1 cut(s) 636
PvuII CAGCTG 1 cut(s) 604
RsaI GTAC 1 cut(s) 175
RsaNI GTAC 1 cut(s) 174
SaqAI TTAA 3 cut(s) 249, 261, 522
SatI GCNGC 2 cut(s) 142, 654
Sau3AI GATC 4 cut(s) 367, 547, 636, 691
Sau96I GGNCC 1 cut(s) 304
ScaI AGTACT 1 cut(s) 175
SchI GAGTC 1 cut(s) 739
ScrFI CCNGG 4 cut(s) 383, 384, 466, 624
SfcI CTRYAG 1 cut(s) 360
SinI GGWCC 1 cut(s) 304
SmaI CCCGGG 1 cut(s) 384
SmlI CTYRAG 1 cut(s) 557
SmoI CTYRAG 1 cut(s) 557
Sse9I AATT 1 cut(s) 79
SsiI CCGC 3 cut(s) 142, 220, 254
SspMI CTAG 1 cut(s) 194
StyD4I CCNGG 4 cut(s) 381, 382, 464, 622
TaaI ACNGT 4 cut(s) 361, 417, 520, 760
TaiI ACGT 1 cut(s) 485
TaqI TCGA 1 cut(s) 61
TasI AATT 1 cut(s) 79
TatI WGTACW 1 cut(s) 173
TauI GCSGC 1 cut(s) 144
TfiI GAWTC 5 cut(s) 128, 469, 553, 563, 685
Tru1I TTAA 3 cut(s) 249, 261, 522
Tru9I TTAA 3 cut(s) 249, 261, 522
TseFI GTSAC 2 cut(s) 239, 352
TseI GCWGC 1 cut(s) 653
Tsp45I GTSAC 2 cut(s) 239, 352
TspDTI ATGAA 2 cut(s) 198, 555
TspMI CCCGGG 1 cut(s) 382
VpaK11BI GGWCC 1 cut(s) 304
XceI RCATGY 1 cut(s) 272
XmaI CCCGGG 1 cut(s) 382
XmnI GAANNNNTTC 1 cut(s) 417
XspI CTAG 1 cut(s) 194
ZrmI AGTACT 1 cut(s) 175
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.