Rmu_sc0004298.1_g000003

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004298.1
OG0000591
Physical Location & Seq
Forward (+)
3971 .. 5345
1375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004298.1_g000003.1.cds

Sequence Viewer

Length: 627 bp
atggttttaggcggcgttggtgatggcggtggggattggggcatggattcggaggcggcatttgaggaagatcgatatggggcatgcatacaccgtcatattggcaatgggctctccaccaatatctggattgatccttggttgttaggagagaagctacagcaatttcagtctcctcgtgcgcaatgggtttcagacctcatctcctccccaggtacatggaattatgccctgttaactgagttatttcctatgaccattgtgcgaaaaattttagcactgccacttagtgttagacctcatgaagatcgatggattcggagtggggataagaaagggaggttcacggtaaattcggcctatcatactgctaggtgtagaattttgggggaatctacccctgcctcaaatcctagttctgaactttggactcaactctggaaagctcctgtaccggggaagatcaaagtatgtgtgtggaaggctgcttcaaatatcctacctactcggagcaggctgagtgaacgtgatattgatattgatacccaatgcccattctgtaaggaggaaattgaatctctccttcatgcactacgtgattgcatccatgccaagtctttcttgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

208

Amino Acids

23.37

Weight (kDa)

7.0

Isoelectric Point (pI)

59.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03566
fragaria_vesca FvH4_2g12622 FvH4_2g12642 FvH4_2g13902 FvH4_3g05011 FvH4_3g18961 FvH4_3g31940 FvH4_4g08421 FvH4_4g21351 FvH4_5g28071 FvH4_5g34871 FvH4_6g21812 FvH4_6g30441 FvH4_6g33631
rosa_chinensis RchiOBHm_Chr1g0320221 RchiOBHm_Chr1g0356521 RchiOBHm_Chr4g0389021 RchiOBHm_Chr5g0020651 RchiOBHm_Chr5g0027511
rosa_laevigata RLG00000002966 RLG00000019504
rosa_multiflora Rmu_co7963640.1_g000001 Rmu_co7988458.1_g000001 Rmu_co8109512.1_g000001 Rmu_co8136160.1_g000001 Rmu_co8253655.1_g000001 Rmu_sc0000388.1_g000040 Rmu_sc0000540.1_g000056 Rmu_sc0000574.1_g000013 Rmu_sc0000623.1_g000001 Rmu_sc0000795.1_g000005 Rmu_sc0000795.1_g000006 Rmu_sc0001063.1_g000001 Rmu_sc0002116.1_g000001 Rmu_sc0002192.1_g000012 Rmu_sc0002640.1_g000015 Rmu_sc0003337.1_g000039 Rmu_sc0004298.1_g000003 Rmu_sc0004771.1_g000001 Rmu_sc0006119.1_g000010 Rmu_sc0006633.1_g000007 Rmu_sc0007025.1_g000016 Rmu_sc0007221.1_g000002 Rmu_sc0007222.1_g000002 Rmu_sc0007806.1_g000016 Rmu_sc0008241.1_g000018 Rmu_sc0008348.1_g000001 Rmu_sc0009034.1_g000001 Rmu_sc0009955.1_g000004 Rmu_sc0018325.1_g000009 Rmu_sc0028328.1_g000002 Rmu_sc0030178.1_g000001 Rmu_sc0034381.1_g000001 Rmu_sc0041085.1_g000001 Rmu_sc0041085.1_g000002
rosa_roxburghii Rroxscaffold_3G00233230 Rroxscaffold_7G00193120 Rroxscaffold_7G00194820
rosa_rugosa Rorug01G0017000 Rorug01G0036400 Rorug01G0062600 Rorug01G0118500 Rorug02G0351500 Rorug02G0497600 Rorug03G0233200 Rorug03G0279500 Rorug03G0347600 Rorug04G0077100 Rorug04G0077200 Rorug04G0210900 Rorug05G0206900 Rorug07G0202900 Rorug07G0334000
rosa_samantha Rh2CG195700 Rh4DG035800
rosa_wichuraiana Rw0G005080 Rw0G013600 Rw2G020080 Rw2G024380 Rw5G002230 Rw5G036790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 183
AccB7I CCANNNNNTGG 1 cut(s) 126
AciI CCGC 3 cut(s) 12, 27, 56
AclWI GGATC 1 cut(s) 128
AcsI RAATTY 3 cut(s) 270, 352, 381
AdeI CACNNNGTG 2 cut(s) 290, 596
AfaI GTAC 2 cut(s) 217, 453
AfiI CCNNNNNNNGG 2 cut(s) 126, 455
AgsI TTSAA 2 cut(s) 492, 575
AjnI CCWGG 1 cut(s) 211
AluBI AGCT 2 cut(s) 157, 446
AluI AGCT 2 cut(s) 157, 446
Alw26I GTCTC 1 cut(s) 177
AlwI GGATC 1 cut(s) 128
AoxI GGCC 1 cut(s) 357
ApeKI GCWGC 1 cut(s) 485
ApoI RAATTY 3 cut(s) 270, 352, 381
AspLEI GCGC 1 cut(s) 184
AsuC2I CCSGG 1 cut(s) 456
AsuHPI GGTGA 1 cut(s) 32
BanII GRGCYC 1 cut(s) 114
BauI CACGAG 1 cut(s) 177
BbvI GCAGC 1 cut(s) 472
BccI CCATC 2 cut(s) 17, 306
BciT130I CCWGG 1 cut(s) 213
BcnI CCSGG 1 cut(s) 456
BcoDI GTCTC 1 cut(s) 177
BfaI CTAG 2 cut(s) 372, 414
BfmI CTRYAG 1 cut(s) 158
BisI GCNGC 3 cut(s) 13, 57, 486
BlsI GCNGC 3 cut(s) 14, 58, 487
Bme1390I CCNGG 2 cut(s) 213, 456
BmrFI CCNGG 2 cut(s) 213, 456
BmsI GCATC 1 cut(s) 612
BpuMI CCSGG 1 cut(s) 456
Bsa29I ATCGAT 2 cut(s) 73, 310
BsaAI YACGTR 1 cut(s) 596
BsaJI CCNNGG 3 cut(s) 137, 211, 455
BsaXI ACNNNNNCTCC 2 cut(s) 188, 218
Bsc4I CCNNNNNNNGG 2 cut(s) 126, 455
Bse3DI GCAATG 2 cut(s) 112, 191
BseBI CCWGG 1 cut(s) 213
BseCI ATCGAT 2 cut(s) 73, 310
BseDI CCNNGG 3 cut(s) 137, 211, 455
BseGI GGATG 1 cut(s) 603
BseLI CCNNNNNNNGG 2 cut(s) 126, 455
BseMI GCAATG 2 cut(s) 112, 191
BseMII CTCAG 2 cut(s) 231, 509
BseRI GAGGAG 2 cut(s) 165, 196
BseXI GCAGC 1 cut(s) 472
BshFI GGCC 1 cut(s) 359
BshVI ATCGAT 2 cut(s) 73, 310
BsiSI CCGG 1 cut(s) 455
BslI CCNNNNNNNGG 2 cut(s) 126, 455
BsmAI GTCTC 1 cut(s) 177
BsnI GGCC 1 cut(s) 359
Bsp1286I GDGCHC 1 cut(s) 114
Bsp143I GATC 4 cut(s) 70, 133, 307, 462
BspACI CCGC 3 cut(s) 12, 27, 56
BspANI GGCC 1 cut(s) 359
BspCNI CTCAG 2 cut(s) 232, 510
BspDI ATCGAT 2 cut(s) 73, 310
BspHI TCATGA 1 cut(s) 301
BspPI GGATC 1 cut(s) 128
BsrDI GCAATG 2 cut(s) 112, 191
BssECI CCNNGG 3 cut(s) 137, 211, 455
BssMI GATC 4 cut(s) 70, 133, 307, 462
BssSI CACGAG 1 cut(s) 177
BssT1I CCWWGG 1 cut(s) 137
Bst2BI CACGAG 1 cut(s) 177
Bst2UI CCWGG 1 cut(s) 213
Bst4CI ACNGT 2 cut(s) 95, 349
BstBAI YACGTR 1 cut(s) 596
BstC8I GCNNGC 2 cut(s) 85, 515
BstDEI CTNAG 3 cut(s) 240, 287, 518
BstF5I GGATG 1 cut(s) 603
BstHHI GCGC 1 cut(s) 184
BstKTI GATC 4 cut(s) 73, 136, 310, 465
BstMAI GTCTC 1 cut(s) 177
BstMBI GATC 4 cut(s) 70, 133, 307, 462
BstNI CCWGG 1 cut(s) 213
BstNSI RCATGY 1 cut(s) 87
BstSCI CCNGG 2 cut(s) 211, 454
BstSFI CTRYAG 1 cut(s) 158
BstV1I GCAGC 1 cut(s) 472
BstXI CCANNNNNNTGG 1 cut(s) 219
Bsu15I ATCGAT 2 cut(s) 73, 310
BsuRI GGCC 1 cut(s) 359
BsuTUI ATCGAT 2 cut(s) 73, 310
BtsCI GGATG 1 cut(s) 603
BtsI GCAGTG 1 cut(s) 278
BtsIMutI CAGTG 1 cut(s) 278
Cac8I GCNNGC 2 cut(s) 85, 515
CciI TCATGA 1 cut(s) 301
CfoI GCGC 1 cut(s) 184
ClaI ATCGAT 2 cut(s) 73, 310
Csp6I GTAC 2 cut(s) 216, 452
CviAII CATG 6 cut(s) 43, 84, 219, 302, 587, 608
CviJI RGCY 6 cut(s) 112, 157, 359, 446, 485, 517
CviKI_1 RGCY 6 cut(s) 112, 157, 359, 446, 485, 517
CviQI GTAC 2 cut(s) 216, 452
DdeI CTNAG 3 cut(s) 240, 287, 518
DpnI GATC 4 cut(s) 72, 135, 309, 464
DpnII GATC 4 cut(s) 70, 133, 307, 462
DraIII CACNNNGTG 2 cut(s) 290, 596
Eco130I CCWWGG 1 cut(s) 137
Eco24I GRGCYC 1 cut(s) 114
EcoRII CCWGG 1 cut(s) 211
EcoT14I CCWWGG 1 cut(s) 137
EcoT22I ATGCAT 1 cut(s) 89
EcoT38I GRGCYC 1 cut(s) 114
ErhI CCWWGG 1 cut(s) 137
FaeI CATG 6 cut(s) 46, 87, 222, 305, 590, 611
FalI AAGNNNNNCTT 1 cut(s) 605
FatI CATG 6 cut(s) 42, 83, 218, 301, 586, 607
Fnu4HI GCNGC 3 cut(s) 13, 57, 486
FokI GGATG 1 cut(s) 590
FriOI GRGCYC 1 cut(s) 114
Fsp4HI GCNGC 3 cut(s) 13, 57, 486
FspBI CTAG 2 cut(s) 372, 414
FspI TGCGCA 1 cut(s) 183
GlaI GCGC 1 cut(s) 183
GluI GCNGC 3 cut(s) 13, 57, 486
HaeIII GGCC 1 cut(s) 359
HapII CCGG 1 cut(s) 455
HhaI GCGC 1 cut(s) 184
Hin1II CATG 6 cut(s) 46, 87, 222, 305, 590, 611
Hin6I GCGC 1 cut(s) 182
HinP1I GCGC 1 cut(s) 182
HincII GTYRAC 1 cut(s) 237
HindII GTYRAC 1 cut(s) 237
HinfI GANTC 5 cut(s) 47, 316, 392, 430, 575
HpaI GTTAAC 1 cut(s) 237
HpaII CCGG 1 cut(s) 455
HphI GGTGA 1 cut(s) 32
Hpy166II GTNNAC 3 cut(s) 237, 345, 524
Hpy188I TCNGA 5 cut(s) 52, 196, 321, 421, 510
Hpy188III TCNNGA 3 cut(s) 127, 302, 439
Hpy8I GTNNAC 3 cut(s) 237, 345, 524
HpyAV CCTTC 2 cut(s) 475, 593
HpyCH4III ACNGT 2 cut(s) 95, 349
HpyCH4IV ACGT 2 cut(s) 526, 595
HpyCH4V TGCA 3 cut(s) 87, 590, 603
HpyF3I CTNAG 3 cut(s) 240, 287, 518
HpySE526I ACGT 2 cut(s) 526, 595
Hsp92II CATG 6 cut(s) 46, 87, 222, 305, 590, 611
HspAI GCGC 1 cut(s) 182
KspAI GTTAAC 1 cut(s) 237
Kzo9I GATC 4 cut(s) 70, 133, 307, 462
LmnI GCTCC 2 cut(s) 451, 510
LpnPI CCDG 9 cut(s) 112, 198, 225, 245, 414, 424, 462, 468, 499
Lsp1109I GCAGC 1 cut(s) 472
LweI GCATC 1 cut(s) 612
MaeI CTAG 2 cut(s) 372, 414
MaeII ACGT 2 cut(s) 526, 595
MalI GATC 4 cut(s) 72, 135, 309, 464
MboI GATC 4 cut(s) 70, 133, 307, 462
MboII GAAGA 3 cut(s) 80, 317, 472
MhlI GDGCHC 1 cut(s) 114
MluCI AATT 6 cut(s) 164, 223, 270, 352, 381, 570
MlyI GAGTC 1 cut(s) 424
MnlI CCTC 9 cut(s) 46, 58, 186, 209, 217, 309, 333, 415, 559
Mph1103I ATGCAT 1 cut(s) 89
MseI TTAA 1 cut(s) 236
MspI CCGG 1 cut(s) 455
MspR9I CCNGG 2 cut(s) 213, 456
MvaI CCWGG 1 cut(s) 213
NciI CCSGG 1 cut(s) 456
NdeII GATC 4 cut(s) 70, 133, 307, 462
NlaIII CATG 6 cut(s) 46, 87, 222, 305, 590, 611
NsbI TGCGCA 1 cut(s) 183
NsiI ATGCAT 1 cut(s) 89
NspI RCATGY 1 cut(s) 87
PaeI GCATGC 1 cut(s) 87
PagI TCATGA 1 cut(s) 301
PfeI GAWTC 4 cut(s) 47, 316, 392, 575
PflMI CCANNNNNTGG 1 cut(s) 126
PkrI GCNGC 3 cut(s) 14, 58, 487
PleI GAGTC 1 cut(s) 424
PpsI GAGTC 1 cut(s) 424
Ppu21I YACGTR 1 cut(s) 596
Psp6I CCWGG 1 cut(s) 211
PspGI CCWGG 1 cut(s) 211
RsaI GTAC 2 cut(s) 217, 453
RsaNI GTAC 2 cut(s) 216, 452
SaqAI TTAA 1 cut(s) 236
SatI GCNGC 3 cut(s) 13, 57, 486
Sau3AI GATC 4 cut(s) 70, 133, 307, 462
SchI GAGTC 1 cut(s) 424
ScrFI CCNGG 2 cut(s) 213, 456
SduI GDGCHC 1 cut(s) 114
SfaNI GCATC 1 cut(s) 612
SfcI CTRYAG 1 cut(s) 158
SphI GCATGC 1 cut(s) 87
Sse9I AATT 6 cut(s) 164, 223, 270, 352, 381, 570
SsiI CCGC 3 cut(s) 12, 27, 56
SspMI CTAG 2 cut(s) 372, 414
StyD4I CCNGG 2 cut(s) 211, 454
StyI CCWWGG 1 cut(s) 137
TaaI ACNGT 2 cut(s) 95, 349
TaiI ACGT 2 cut(s) 529, 598
TaqI TCGA 2 cut(s) 73, 310
TasI AATT 6 cut(s) 164, 223, 270, 352, 381, 570
TauI GCSGC 2 cut(s) 15, 59
TfiI GAWTC 4 cut(s) 47, 316, 392, 575
Tru1I TTAA 1 cut(s) 236
Tru9I TTAA 1 cut(s) 236
TscAI CASTG 1 cut(s) 285
TseI GCWGC 1 cut(s) 485
TspDTI ATGAA 2 cut(s) 318, 575
TspRI CASTG 1 cut(s) 285
Van91I CCANNNNNTGG 1 cut(s) 126
XapI RAATTY 3 cut(s) 270, 352, 381
XceI RCATGY 1 cut(s) 87
XspI CTAG 2 cut(s) 372, 414
Zsp2I ATGCAT 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.