FvH4_2g12642

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000591
Physical Location & Seq
Reverse (-)
11103176 .. 11103693
518 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g12642.t1

Sequence Viewer

Length: 432 bp
ATGGATAGCGTACCAACATCTGGAGTGTGGAATGTTGGTGTTTTACAGGAACTCTTCCCTGCTTCTATTGTGCGTAAGATTTTGGCGCTTCCAAATAGTTCTAGAGAGCATAAGGATAGATGGATTTGGAGTGAAGATAAACTGGGCCAGTTCTCCGTTAAAACAACTTATCATTTGGCTAGAAAATGTGTACTTGACCATGAGCATGTTCTGAATCCGAGCTCTTTACTTTGGAACAAACTTTGGAAGGCTAAGGTTCTGGGTAAAGTCAAGGTGTGTGCTTGGAAAACTGCCTCTAATATTCTTCCCACAAGAAGTATGCTCAGTGAACGGGGTGAGGATATTGACACCCAATGCCCTTTCTATGAGGAGGAGGTGGAGTCACCTATTCATGCACTGAGAGATTATTCCCACGCAACTGAGTGCCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

144

Amino Acids

16.39

Weight (kDa)

7.0

Isoelectric Point (pI)

63.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 51 - 135 1.4e-10 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03566
fragaria_vesca FvH4_2g12622 FvH4_2g12642 FvH4_2g13902 FvH4_3g05011 FvH4_3g18961 FvH4_3g31940 FvH4_4g08421 FvH4_4g21351 FvH4_5g28071 FvH4_5g34871 FvH4_6g21812 FvH4_6g30441 FvH4_6g33631
rosa_chinensis RchiOBHm_Chr1g0320221 RchiOBHm_Chr1g0356521 RchiOBHm_Chr4g0389021 RchiOBHm_Chr5g0020651 RchiOBHm_Chr5g0027511
rosa_laevigata RLG00000002966 RLG00000019504
rosa_multiflora Rmu_co7963640.1_g000001 Rmu_co7988458.1_g000001 Rmu_co8109512.1_g000001 Rmu_co8136160.1_g000001 Rmu_co8253655.1_g000001 Rmu_sc0000388.1_g000040 Rmu_sc0000540.1_g000056 Rmu_sc0000574.1_g000013 Rmu_sc0000623.1_g000001 Rmu_sc0000795.1_g000005 Rmu_sc0000795.1_g000006 Rmu_sc0001063.1_g000001 Rmu_sc0002116.1_g000001 Rmu_sc0002192.1_g000012 Rmu_sc0002640.1_g000015 Rmu_sc0003337.1_g000039 Rmu_sc0004298.1_g000003 Rmu_sc0004771.1_g000001 Rmu_sc0006119.1_g000010 Rmu_sc0006633.1_g000007 Rmu_sc0007025.1_g000016 Rmu_sc0007221.1_g000002 Rmu_sc0007222.1_g000002 Rmu_sc0007806.1_g000016 Rmu_sc0008241.1_g000018 Rmu_sc0008348.1_g000001 Rmu_sc0009034.1_g000001 Rmu_sc0009955.1_g000004 Rmu_sc0018325.1_g000009 Rmu_sc0028328.1_g000002 Rmu_sc0030178.1_g000001 Rmu_sc0034381.1_g000001 Rmu_sc0041085.1_g000001 Rmu_sc0041085.1_g000002
rosa_roxburghii Rroxscaffold_3G00233230 Rroxscaffold_7G00193120 Rroxscaffold_7G00194820
rosa_rugosa Rorug01G0017000 Rorug01G0036400 Rorug01G0062600 Rorug01G0118500 Rorug02G0351500 Rorug02G0497600 Rorug03G0233200 Rorug03G0279500 Rorug03G0347600 Rorug04G0077100 Rorug04G0077200 Rorug04G0210900 Rorug05G0206900 Rorug07G0202900 Rorug07G0334000
rosa_samantha Rh2CG195700 Rh4DG035800
rosa_wichuraiana Rw0G005080 Rw0G013600 Rw2G020080 Rw2G024380 Rw5G002230 Rw5G036790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 20
AfaI GTAC 2 cut(s) 12, 192
AfiI CCNNNNNNNGG 1 cut(s) 20
AluBI AGCT 1 cut(s) 222
AluI AGCT 1 cut(s) 222
Alw21I GWGCWC 1 cut(s) 224
AoxI GGCC 1 cut(s) 145
AspLEI GCGC 1 cut(s) 88
AspS9I GGNCC 1 cut(s) 145
AsuHPI GGTGA 2 cut(s) 347, 375
BanII GRGCYC 1 cut(s) 224
Bbv12I GWGCWC 1 cut(s) 224
BccI CCATC 1 cut(s) 114
BfaI CTAG 2 cut(s) 102, 180
BfoI RGCGCY 1 cut(s) 89
BmgT120I GGNCC 1 cut(s) 145
BmrI ACTGGG 1 cut(s) 152
BmuI ACTGGG 1 cut(s) 152
BpmI CTGGAG 1 cut(s) 42
Bpu10I CCTNAGC 1 cut(s) 252
BsaXI ACNNNNNCTCC 2 cut(s) 365, 395
Bsc4I CCNNNNNNNGG 1 cut(s) 20
Bse1I ACTGG 2 cut(s) 147, 148
BseLI CCNNNNNNNGG 1 cut(s) 20
BseMII CTCAG 3 cut(s) 337, 389, 411
BseNI ACTGG 2 cut(s) 147, 148
BseRI GAGGAG 2 cut(s) 383, 386
BshFI GGCC 1 cut(s) 147
BsiHKAI GWGCWC 1 cut(s) 224
BslI CCNNNNNNNGG 1 cut(s) 20
BsnI GGCC 1 cut(s) 147
Bsp1286I GDGCHC 1 cut(s) 224
BspANI GGCC 1 cut(s) 147
BspCNI CTCAG 3 cut(s) 336, 390, 412
BsrI ACTGG 2 cut(s) 147, 148
Bst6I CTCTTC 1 cut(s) 59
BstDEI CTNAG 4 cut(s) 252, 323, 398, 420
BstH2I RGCGCY 1 cut(s) 89
BstHHI GCGC 1 cut(s) 88
BstNSI RCATGY 1 cut(s) 209
BsuRI GGCC 1 cut(s) 147
BtsIMutI CAGTG 2 cut(s) 331, 395
CfoI GCGC 1 cut(s) 88
Cfr13I GGNCC 1 cut(s) 145
Csp6I GTAC 2 cut(s) 11, 191
CviAII CATG 3 cut(s) 200, 206, 392
CviJI RGCY 4 cut(s) 147, 179, 222, 251
CviKI_1 RGCY 4 cut(s) 147, 179, 222, 251
CviQI GTAC 2 cut(s) 11, 191
DdeI CTNAG 4 cut(s) 252, 323, 398, 420
Eam1104I CTCTTC 1 cut(s) 59
EarI CTCTTC 1 cut(s) 59
Ecl136II GAGCTC 1 cut(s) 222
Eco24I GRGCYC 1 cut(s) 224
Eco53kI GAGCTC 1 cut(s) 222
EcoICRI GAGCTC 1 cut(s) 222
EcoT38I GRGCYC 1 cut(s) 224
FaeI CATG 3 cut(s) 203, 209, 395
FaiI YATR 6 cut(s) 111, 201, 207, 320, 366, 393
FatI CATG 3 cut(s) 199, 205, 391
FriOI GRGCYC 1 cut(s) 224
FspBI CTAG 2 cut(s) 102, 180
GlaI GCGC 1 cut(s) 87
GsuI CTGGAG 1 cut(s) 42
HaeII RGCGCY 1 cut(s) 89
HaeIII GGCC 1 cut(s) 147
HhaI GCGC 1 cut(s) 88
Hin1II CATG 3 cut(s) 203, 209, 395
Hin6I GCGC 1 cut(s) 86
HinP1I GCGC 1 cut(s) 86
HinfI GANTC 2 cut(s) 214, 380
HphI GGTGA 2 cut(s) 347, 375
Hpy166II GTNNAC 2 cut(s) 191, 329
Hpy188I TCNGA 2 cut(s) 213, 219
Hpy188III TCNNGA 2 cut(s) 21, 102
Hpy8I GTNNAC 2 cut(s) 191, 329
HpyAV CCTTC 1 cut(s) 241
HpyCH4V TGCA 1 cut(s) 395
HpyF3I CTNAG 4 cut(s) 252, 323, 398, 420
Hsp92II CATG 3 cut(s) 203, 209, 395
HspAI GCGC 1 cut(s) 86
LpnPI CCDG 6 cut(s) 6, 32, 72, 128, 161, 245
MaeI CTAG 2 cut(s) 102, 180
MaeIII GTNAC 1 cut(s) 381
MboII GAAGA 3 cut(s) 46, 146, 296
MhlI GDGCHC 1 cut(s) 224
MlyI GAGTC 1 cut(s) 389
MnlI CCTC 5 cut(s) 304, 331, 361, 364, 367
MseI TTAA 2 cut(s) 159, 430
MslI CAYNNNNRTG 1 cut(s) 204
NlaIII CATG 3 cut(s) 203, 209, 395
NmuCI GTSAC 1 cut(s) 381
NspI RCATGY 1 cut(s) 209
PfeI GAWTC 1 cut(s) 214
PflMI CCANNNNNTGG 1 cut(s) 20
PleI GAGTC 1 cut(s) 388
PpsI GAGTC 1 cut(s) 388
Psp124BI GAGCTC 1 cut(s) 224
PspPI GGNCC 1 cut(s) 145
RsaI GTAC 2 cut(s) 12, 192
RsaNI GTAC 2 cut(s) 11, 191
RseI CAYNNNNRTG 1 cut(s) 204
SacI GAGCTC 1 cut(s) 224
SaqAI TTAA 2 cut(s) 159, 430
Sau96I GGNCC 1 cut(s) 145
SchI GAGTC 1 cut(s) 389
SduI GDGCHC 1 cut(s) 224
SetI ASST 5 cut(s) 224, 258, 276, 378, 388
SmiMI CAYNNNNRTG 1 cut(s) 204
SspI AATATT 1 cut(s) 301
SspMI CTAG 2 cut(s) 102, 180
SstI GAGCTC 1 cut(s) 224
TatI WGTACW 1 cut(s) 190
TfiI GAWTC 1 cut(s) 214
Tru1I TTAA 2 cut(s) 159, 430
Tru9I TTAA 2 cut(s) 159, 430
TscAI CASTG 2 cut(s) 331, 402
TseFI GTSAC 1 cut(s) 381
Tsp45I GTSAC 1 cut(s) 381
TspDTI ATGAA 1 cut(s) 380
TspGWI ACGGA 1 cut(s) 145
TspRI CASTG 2 cut(s) 331, 402
Van91I CCANNNNNTGG 1 cut(s) 20
XbaI TCTAGA 1 cut(s) 101
XceI RCATGY 1 cut(s) 209
XspI CTAG 2 cut(s) 102, 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.